Wall clock time and date at job start Tue Mar 31 2020 08:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38284 * 119.92761 * 2 1 4 4 C 1.38115 * 120.06785 * 179.76626 * 3 2 1 5 5 C 1.38869 * 119.93218 * 0.50583 * 4 3 2 6 6 N 1.39920 * 120.07352 * 179.72030 * 5 4 3 7 7 C 1.46501 * 119.99936 * 172.75126 * 6 5 4 8 8 C 1.50700 * 109.46694 * 94.91941 * 7 6 5 9 9 H 1.07999 * 120.00223 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99772 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99797 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99905 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47316 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47235 * 119.99827 * 12 10 8 15 15 H 1.48506 * 109.46969 * 239.99937 * 12 10 8 16 16 C 1.34779 * 119.99999 * 352.76185 * 6 5 4 17 17 O 1.21289 * 119.99655 * 5.02261 * 16 6 5 18 18 C 1.50694 * 119.99942 * 185.03124 * 16 6 5 19 19 H 1.09001 * 110.69985 * 333.46891 * 18 16 6 20 20 C 1.54260 * 110.78648 * 210.15760 * 18 16 6 21 21 C 1.52333 * 112.58832 * 217.19571 * 20 18 16 22 22 C 1.54257 * 112.58969 * 359.97438 * 21 20 18 23 23 S 1.83952 * 110.79259 * 96.99478 * 18 16 6 24 24 C 1.38873 * 119.85712 * 359.74962 * 5 4 3 25 25 C 1.38119 * 119.93058 * 359.97438 * 24 5 4 26 26 H 1.09004 * 109.47106 * 269.72526 * 1 2 3 27 27 H 1.08998 * 109.46959 * 149.72842 * 1 2 3 28 28 H 1.08997 * 109.47066 * 29.72533 * 1 2 3 29 29 H 1.07996 * 119.96173 * 0.02562 * 3 2 1 30 30 H 1.08004 * 120.03098 * 180.25722 * 4 3 2 31 31 H 1.08997 * 109.47118 * 214.91431 * 7 6 5 32 32 H 1.08997 * 109.47297 * 334.91655 * 7 6 5 33 33 H 0.97007 * 120.00240 * 180.02562 * 11 10 8 34 34 H 1.09006 * 108.86514 * 338.01626 * 20 18 16 35 35 H 1.08993 * 108.87428 * 96.51886 * 20 18 16 36 36 H 1.09011 * 108.86829 * 120.81581 * 21 20 18 37 37 H 1.08995 * 108.86955 * 239.17522 * 21 20 18 38 38 H 1.08995 * 110.79027 * 142.79301 * 22 21 20 39 39 H 1.08995 * 110.78679 * 266.26116 * 22 21 20 40 40 H 1.07999 * 120.03567 * 180.02562 * 24 5 4 41 41 H 1.08001 * 119.96305 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5781 1.2018 0.0049 5 6 4.2739 0.0001 -0.0008 6 7 5.6731 0.0001 -0.0018 7 6 6.4058 -1.2592 0.1523 8 6 6.7614 -1.8029 -1.2075 9 1 6.4705 -1.2646 -2.0974 10 6 7.4574 -2.9883 -1.3154 11 7 7.8112 -3.6441 -0.2318 12 14 7.8977 -3.6627 -3.0009 13 1 7.3883 -2.7438 -4.0503 14 1 9.3735 -3.7786 -3.1176 15 1 7.2806 -5.0023 -3.1746 16 6 6.3469 1.1587 -0.1443 17 8 5.7439 2.2104 -0.1802 18 6 7.8494 1.1472 -0.2593 19 1 8.2670 0.2702 0.2352 20 6 8.4528 2.4425 0.3218 21 6 9.6545 2.9364 -0.4735 22 6 9.9864 2.0250 -1.6730 23 16 8.3700 1.2185 -2.0222 24 6 3.5781 -1.2017 -0.0062 25 6 2.1970 -1.1984 -0.0053 26 1 -0.3633 -0.0049 1.0277 27 1 -0.3633 -0.8875 -0.5180 28 1 -0.3633 0.8924 -0.5095 29 1 1.6551 2.1327 0.0004 30 1 4.1163 2.1382 0.0091 31 1 7.3176 -1.0816 0.7224 32 1 5.7818 -1.9803 0.6802 33 1 8.3012 -4.4778 -0.3077 34 1 7.6874 3.2186 0.3224 35 1 8.7653 2.2560 1.3492 36 1 9.4452 3.9411 -0.8411 37 1 10.5208 2.9791 0.1866 38 1 10.3163 2.6153 -2.5278 39 1 10.7378 1.2843 -1.3997 40 1 4.1164 -2.1380 -0.0102 41 1 1.6553 -2.1327 -0.0098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075196012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:09 Heat of formation + Delta-G solvation = -12.245642 kcal Electronic energy + Delta-G solvation = -23071.102063 eV Core-core repulsion = 19848.797249 eV Total energy + Delta-G solvation = -3222.304814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.88135 -39.60569 -37.20519 -36.64619 -34.72531 -33.01116 -31.80942 -30.91159 -29.42224 -27.57530 -26.18122 -25.31556 -23.35138 -22.89358 -21.51803 -20.45235 -18.81926 -18.62666 -18.15429 -17.67158 -16.56343 -16.50346 -16.25433 -15.92888 -15.40058 -15.28267 -14.82989 -14.60754 -14.47964 -14.39114 -14.31942 -13.81550 -13.48481 -13.36962 -13.18297 -12.95772 -12.90621 -12.71146 -12.58433 -12.52624 -12.41545 -12.18862 -11.91677 -11.81732 -11.38762 -10.85711 -10.75676 -10.65046 -10.32627 -9.80165 -8.70629 -8.67228 -8.22040 -6.34328 0.16156 0.54924 0.67009 1.35661 1.36888 1.40159 1.51514 1.90714 1.95999 2.40277 2.96989 3.08533 3.32765 3.46187 3.88543 4.03562 4.08929 4.10559 4.18905 4.24140 4.28701 4.46699 4.49243 4.58050 4.62868 4.75803 4.87018 4.89655 4.93182 4.99254 5.05669 5.08119 5.19208 5.20786 5.25036 5.44331 5.54015 5.66509 5.74009 5.81015 5.93676 6.29020 6.35452 6.73466 7.02827 7.35239 8.82818 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.006505 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.366462 B = 4303.464000 C = 6286.504178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.120 4.120 3 C -0.105 4.105 4 C -0.189 4.189 5 C 0.129 3.871 6 N -0.535 5.535 7 C 0.243 3.757 8 C -0.521 4.521 9 H 0.045 0.955 10 C 0.035 3.965 11 N -0.917 5.917 12 Si 0.947 3.053 13 H -0.279 1.279 14 H -0.273 1.273 15 H -0.278 1.278 16 C 0.533 3.467 17 O -0.541 6.541 18 C -0.049 4.049 19 H 0.110 0.890 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.061 4.061 23 S -0.306 6.306 24 C -0.159 4.159 25 C -0.103 4.103 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.144 0.856 30 H 0.167 0.833 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.269 0.731 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 9.772 2.101 10.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.121 4.121 3 C -0.124 4.124 4 C -0.209 4.209 5 C 0.034 3.966 6 N -0.254 5.254 7 C 0.124 3.876 8 C -0.560 4.560 9 H 0.063 0.937 10 C -0.166 4.166 11 N -0.557 5.557 12 Si 0.773 3.227 13 H -0.204 1.204 14 H -0.199 1.199 15 H -0.204 1.204 16 C 0.322 3.678 17 O -0.423 6.423 18 C -0.179 4.179 19 H 0.128 0.872 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.209 4.209 23 S -0.080 6.080 24 C -0.180 4.180 25 C -0.121 4.121 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.162 0.838 30 H 0.183 0.817 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.135 0.865 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.984 9.764 1.098 10.269 hybrid contribution 1.019 -0.812 0.140 1.310 sum -1.966 8.952 1.238 9.248 Atomic orbital electron populations 1.20743 0.88541 1.03502 1.03031 1.20269 0.97876 0.92410 1.01574 1.21257 0.92890 0.98706 0.99534 1.22699 0.95783 0.99099 1.03311 1.18387 0.82333 0.95454 1.00416 1.45887 1.04809 1.09544 1.65178 1.19407 0.91387 0.79389 0.97456 1.21301 1.36027 1.06801 0.91851 0.93706 1.25385 0.95141 0.96487 0.99586 1.69983 1.39618 1.16981 1.29088 0.85663 0.78365 0.77953 0.80723 1.20412 1.19855 1.20367 1.20159 0.89719 0.82641 0.75319 1.90225 1.68335 1.31938 1.51765 1.23838 0.93842 1.04337 0.95917 0.87181 1.22135 0.98707 0.93735 1.01054 1.21944 0.97739 0.99919 0.95650 1.24399 0.93680 1.00502 1.02272 1.88536 1.26618 1.81867 1.10971 1.21084 0.95514 0.96449 1.04923 1.21070 0.92258 0.99019 0.99777 0.90251 0.90814 0.90625 0.83787 0.81656 0.94624 0.94695 0.92228 0.90049 0.88862 0.89309 0.87698 0.85568 0.88230 0.86532 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 10.01 71.24 0.71 -1.33 16 2 C -0.12 -3.56 5.88 -19.84 -0.12 -3.67 16 3 C -0.11 -3.41 9.69 22.25 0.22 -3.19 16 4 C -0.19 -7.57 9.05 22.39 0.20 -7.37 16 5 C 0.13 5.66 6.49 38.15 0.25 5.91 16 6 N -0.54 -24.61 2.69 -635.32 -1.71 -26.32 16 7 C 0.24 12.00 4.30 85.63 0.37 12.37 16 8 C -0.52 -27.74 9.14 25.60 0.23 -27.51 16 9 H 0.04 2.56 7.81 -2.91 -0.02 2.54 16 10 C 0.03 1.84 5.46 84.66 0.46 2.31 16 11 N -0.92 -50.21 13.29 21.45 0.28 -49.93 16 12 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 16 C 0.53 23.07 6.79 87.65 0.59 23.67 16 17 O -0.54 -23.82 12.11 -3.06 -0.04 -23.85 16 18 C -0.05 -1.83 3.04 30.27 0.09 -1.74 16 19 H 0.11 4.45 5.89 -2.39 -0.01 4.43 16 20 C -0.12 -3.28 5.89 30.80 0.18 -3.10 16 21 C -0.11 -2.39 6.30 30.80 0.19 -2.20 16 22 C -0.06 -1.48 7.46 72.41 0.54 -0.94 16 23 S -0.31 -11.72 22.72 -56.49 -1.28 -13.01 16 24 C -0.16 -6.56 9.16 22.39 0.21 -6.35 16 25 C -0.10 -3.41 9.69 22.25 0.22 -3.20 16 26 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 28 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 29 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 30 H 0.17 6.99 4.54 -61.26 -0.28 6.71 16 31 H 0.04 1.79 6.17 -2.39 -0.01 1.78 16 32 H 0.04 1.82 6.25 -2.39 -0.01 1.80 16 33 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 34 H 0.08 2.47 6.79 -2.38 -0.02 2.46 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 38 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.12 5.21 6.26 -2.91 -0.02 5.19 16 41 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -64.21 343.18 4.40 -59.81 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.77 Total: 24.02 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 4.35 Total: -16.33 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -1.43 Total: -76.25 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.04 Total: -23.85 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -11.72 SS G_CDS: -1.28 Total: -13.01 kcal Total: -64.21 4.40 -59.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075196012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.567 kcal (2) G-P(sol) polarization free energy of solvation -64.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds