Wall clock time and date at job start Tue Mar 31 2020 08:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38282 * 119.92870 * 2 1 4 4 C 1.38112 * 120.07041 * 179.97438 * 3 2 1 5 5 C 1.38873 * 119.92703 * 0.02562 * 4 3 2 6 6 N 1.39928 * 120.06787 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99993 * 247.93653 * 6 5 4 8 8 C 1.50698 * 109.47439 * 89.99845 * 7 6 5 9 9 H 1.08006 * 119.99646 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00289 * 180.27492 * 8 7 6 11 11 N 1.31507 * 120.00348 * 179.72622 * 10 8 7 12 12 Si 1.86803 * 119.99840 * 359.72399 * 10 8 7 13 13 H 1.48505 * 109.46761 * 90.00079 * 12 10 8 14 14 H 1.48498 * 109.47352 * 209.99732 * 12 10 8 15 15 H 1.48499 * 109.47173 * 330.00244 * 12 10 8 16 16 C 1.34780 * 120.00096 * 67.93850 * 6 5 4 17 17 O 1.21286 * 119.99979 * 185.04531 * 16 6 5 18 18 C 1.50699 * 119.99814 * 5.03684 * 16 6 5 19 19 H 1.09001 * 110.30721 * 22.59094 * 18 16 6 20 20 C 1.53710 * 110.33961 * 144.76241 * 18 16 6 21 21 C 1.52934 * 112.49146 * 116.04625 * 20 18 16 22 22 C 1.55155 * 108.96024 * 30.10229 * 21 20 18 23 23 S 1.83397 * 110.34428 * 260.30674 * 18 16 6 24 24 C 1.38873 * 119.86123 * 0.25134 * 5 4 3 25 25 C 1.38108 * 119.92467 * 359.47104 * 24 5 4 26 26 H 1.08996 * 109.47067 * 89.99535 * 1 2 3 27 27 H 1.08999 * 109.47190 * 210.00286 * 1 2 3 28 28 H 1.09007 * 109.47151 * 330.00064 * 1 2 3 29 29 H 1.08001 * 119.96854 * 0.02562 * 3 2 1 30 30 H 1.07999 * 120.03361 * 180.02562 * 4 3 2 31 31 H 1.09006 * 109.47229 * 329.99864 * 7 6 5 32 32 H 1.09001 * 109.47370 * 210.00533 * 7 6 5 33 33 H 0.97003 * 120.00760 * 179.97438 * 11 10 8 34 34 H 1.08999 * 108.88480 * 236.84571 * 20 18 16 35 35 H 1.08999 * 108.88765 * 355.39482 * 20 18 16 36 36 H 1.08997 * 109.60428 * 150.02841 * 21 20 18 37 37 H 1.08994 * 109.60812 * 270.17498 * 21 20 18 38 38 H 1.09001 * 111.13270 * 76.47101 * 22 21 20 39 39 H 1.09003 * 111.13327 * 200.64373 * 22 21 20 40 40 H 1.08000 * 120.03509 * 179.75452 * 24 5 4 41 41 H 1.08004 * 119.96274 * 180.28070 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.2739 0.0000 0.0005 6 7 5.6731 0.0000 0.0005 7 6 6.4056 -0.4765 -1.1753 8 6 6.6568 0.6767 -2.1122 9 1 6.3062 1.6659 -1.8571 10 6 7.3296 0.4682 -3.2974 11 7 7.5440 1.4736 -4.1176 12 14 7.9366 -1.2426 -3.7383 13 1 6.8823 -1.9612 -4.4982 14 1 9.1606 -1.1339 -4.5720 15 1 8.2492 -1.9925 -2.4953 16 6 6.3471 0.4384 1.0823 17 8 7.5564 0.5248 1.0495 18 6 5.5979 0.8215 2.3325 19 1 4.6239 0.3326 2.3547 20 6 6.4130 0.4453 3.5802 21 6 6.8266 1.6686 4.3996 22 6 5.7548 2.7770 4.2266 23 16 5.4023 2.6426 2.4259 24 6 3.5780 -1.2018 -0.0053 25 6 2.1970 -1.1984 0.0000 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5139 29 1 1.6553 2.1328 0.0004 30 1 4.1163 2.1381 0.0010 31 1 5.8166 -1.2382 -1.6863 32 1 7.3580 -0.9039 -0.8615 33 1 8.0177 1.3270 -4.9513 34 1 5.8132 -0.2137 4.2080 35 1 7.3111 -0.0875 3.2676 36 1 6.9032 1.3950 5.4519 37 1 7.7913 2.0348 4.0486 38 1 4.8656 2.5597 4.8184 39 1 6.1601 3.7578 4.4756 40 1 4.1163 -2.1381 -0.0093 41 1 1.6552 -2.1327 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075196013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:11 Heat of formation + Delta-G solvation = -7.642040 kcal Electronic energy + Delta-G solvation = -23105.564521 eV Core-core repulsion = 19883.459334 eV Total energy + Delta-G solvation = -3222.105187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.10384 -38.47997 -35.85617 -35.05308 -32.75333 -31.32462 -30.81056 -30.14976 -28.06742 -26.10637 -25.26463 -22.93017 -22.11010 -21.66900 -20.62300 -19.05614 -17.52147 -16.99225 -16.69408 -15.68682 -15.35511 -15.22190 -14.93117 -14.40414 -14.18210 -13.98932 -13.63153 -13.59217 -13.33174 -13.18275 -12.71463 -12.42485 -12.30854 -12.17099 -11.86116 -11.72183 -11.59527 -11.52694 -11.32721 -10.99654 -10.82456 -10.67710 -10.57276 -10.19448 -9.84065 -9.58841 -9.45375 -8.69477 -8.58419 -8.52631 -7.69163 -7.54809 -6.07095 -4.06011 1.45516 1.62043 1.68666 2.30442 3.26661 3.33484 3.36796 3.44214 3.56025 3.96329 4.39425 4.48776 4.65764 4.76226 4.94087 5.01261 5.05502 5.15348 5.18366 5.24804 5.26457 5.44704 5.49285 5.57978 5.62878 5.65831 5.73299 5.83275 5.93528 5.97316 6.07449 6.12777 6.27498 6.50869 6.62507 6.75722 6.79351 6.89805 7.07705 7.31108 7.57769 8.12747 8.45074 8.76515 8.97386 9.51368 11.06300 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.010043 B = 0.006699 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.314481 B = 4178.971278 C = 5998.917863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.106 4.106 4 C -0.103 4.103 5 C 0.147 3.853 6 N -0.549 5.549 7 C 0.219 3.781 8 C -0.526 4.526 9 H 0.076 0.924 10 C 0.075 3.925 11 N -0.894 5.894 12 Si 0.872 3.128 13 H -0.275 1.275 14 H -0.282 1.282 15 H -0.264 1.264 16 C 0.532 3.468 17 O -0.510 6.510 18 C -0.067 4.067 19 H 0.110 0.890 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.080 4.080 23 S -0.236 6.236 24 C -0.123 4.123 25 C -0.113 4.113 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.029 0.971 32 H 0.044 0.956 33 H 0.265 0.735 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.762 -3.475 16.249 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.125 4.125 4 C -0.123 4.123 5 C 0.055 3.945 6 N -0.277 5.277 7 C 0.100 3.900 8 C -0.565 4.565 9 H 0.095 0.905 10 C -0.128 4.128 11 N -0.533 5.533 12 Si 0.698 3.302 13 H -0.200 1.200 14 H -0.208 1.208 15 H -0.189 1.189 16 C 0.316 3.684 17 O -0.384 6.384 18 C -0.199 4.199 19 H 0.129 0.871 20 C -0.157 4.157 21 C -0.160 4.160 22 C -0.229 4.229 23 S -0.010 6.010 24 C -0.143 4.143 25 C -0.132 4.132 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.141 0.859 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.231 -2.549 15.201 19.071 hybrid contribution 0.576 -1.589 0.209 1.704 sum -10.654 -4.139 15.409 19.186 Atomic orbital electron populations 1.20740 0.91455 1.02321 1.02122 1.19863 0.95837 0.93180 1.01044 1.20859 0.93452 0.97494 1.00661 1.21433 0.94305 0.97763 0.98774 1.17684 0.83472 0.93126 1.00175 1.45543 1.03341 1.62825 1.15973 1.19818 0.92023 0.95935 0.82181 1.21239 1.37132 0.95608 1.02473 0.90547 1.24811 0.95248 0.96805 0.95926 1.69886 1.41519 1.30805 1.11053 0.86913 0.79000 0.85178 0.79073 1.20030 1.20795 1.18899 1.19660 0.87683 0.77570 0.83456 1.90688 1.13525 1.51577 1.82659 1.23867 1.02845 0.95882 0.97299 0.87143 1.21936 1.01180 0.99126 0.93411 1.22355 0.99572 0.93568 1.00514 1.24431 1.01524 1.02642 0.94271 1.88077 1.93177 1.07216 1.12495 1.21234 0.94269 0.97388 1.01405 1.20792 0.93361 0.97421 1.01577 0.91386 0.91890 0.91762 0.85943 0.85509 0.95322 0.93821 0.92533 0.90845 0.88924 0.90192 0.89914 0.89238 0.87587 0.85895 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.10 -1.27 5.88 -104.59 -0.62 -1.89 16 3 C -0.11 -1.53 9.69 -39.61 -0.38 -1.91 16 4 C -0.10 -1.81 8.56 -39.39 -0.34 -2.15 16 5 C 0.15 2.73 3.84 -83.69 -0.32 2.41 16 6 N -0.55 -11.92 2.51 -114.74 -0.29 -12.21 16 7 C 0.22 5.51 4.14 -5.20 -0.02 5.48 16 8 C -0.53 -15.54 9.94 -34.44 -0.34 -15.88 16 9 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 10 C 0.07 2.22 5.47 -17.82 -0.10 2.12 16 11 N -0.89 -28.07 13.96 55.43 0.77 -27.30 16 12 Si 0.87 21.76 27.46 -169.99 -4.67 17.09 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.26 -6.37 6.55 56.52 0.37 -6.00 16 16 C 0.53 11.20 6.57 -10.98 -0.07 11.13 16 17 O -0.51 -12.57 15.58 5.55 0.09 -12.48 16 18 C -0.07 -1.08 2.74 -27.51 -0.08 -1.15 16 19 H 0.11 1.64 6.75 -51.93 -0.35 1.29 16 20 C -0.12 -1.53 5.87 -26.40 -0.15 -1.69 16 21 C -0.12 -1.33 6.34 -25.62 -0.16 -1.50 16 22 C -0.08 -0.87 7.52 38.30 0.29 -0.58 16 23 S -0.24 -3.75 21.34 -107.50 -2.29 -6.04 16 24 C -0.12 -1.94 9.68 -39.39 -0.38 -2.32 16 25 C -0.11 -1.49 9.69 -39.61 -0.38 -1.87 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 28 H 0.06 0.54 8.08 -51.92 -0.42 0.12 16 29 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.13 2.46 7.23 -52.49 -0.38 2.08 16 31 H 0.03 0.68 7.27 -51.93 -0.38 0.31 16 32 H 0.04 1.15 6.56 -51.93 -0.34 0.81 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.37 6.97 -51.93 -0.36 1.01 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -34.29 347.91 -9.89 -44.18 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.04 Total: 1.99 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -2.70 Total: -10.47 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.49 Total: -39.51 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -2.29 Total: -6.04 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.29 -9.89 -44.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075196013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.540 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds