Wall clock time and date at job start Tue Mar 31 2020 08:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38282 * 119.92870 * 2 1 4 4 C 1.38112 * 120.07041 * 179.97438 * 3 2 1 5 5 C 1.38873 * 119.92703 * 0.02562 * 4 3 2 6 6 N 1.39928 * 120.06787 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99993 * 247.93653 * 6 5 4 8 8 C 1.50698 * 109.47439 * 89.99845 * 7 6 5 9 9 H 1.08006 * 119.99646 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00289 * 180.27492 * 8 7 6 11 11 N 1.31507 * 120.00348 * 179.72622 * 10 8 7 12 12 Si 1.86803 * 119.99840 * 359.72399 * 10 8 7 13 13 H 1.48505 * 109.46761 * 90.00079 * 12 10 8 14 14 H 1.48498 * 109.47352 * 209.99732 * 12 10 8 15 15 H 1.48499 * 109.47173 * 330.00244 * 12 10 8 16 16 C 1.34780 * 120.00096 * 67.93850 * 6 5 4 17 17 O 1.21286 * 119.99979 * 185.04531 * 16 6 5 18 18 C 1.50699 * 119.99814 * 5.03684 * 16 6 5 19 19 H 1.09001 * 110.30721 * 22.59094 * 18 16 6 20 20 C 1.53710 * 110.33961 * 144.76241 * 18 16 6 21 21 C 1.52934 * 112.49146 * 116.04625 * 20 18 16 22 22 C 1.55155 * 108.96024 * 30.10229 * 21 20 18 23 23 S 1.83397 * 110.34428 * 260.30674 * 18 16 6 24 24 C 1.38873 * 119.86123 * 0.25134 * 5 4 3 25 25 C 1.38108 * 119.92467 * 359.47104 * 24 5 4 26 26 H 1.08996 * 109.47067 * 89.99535 * 1 2 3 27 27 H 1.08999 * 109.47190 * 210.00286 * 1 2 3 28 28 H 1.09007 * 109.47151 * 330.00064 * 1 2 3 29 29 H 1.08001 * 119.96854 * 0.02562 * 3 2 1 30 30 H 1.07999 * 120.03361 * 180.02562 * 4 3 2 31 31 H 1.09006 * 109.47229 * 329.99864 * 7 6 5 32 32 H 1.09001 * 109.47370 * 210.00533 * 7 6 5 33 33 H 0.97003 * 120.00760 * 179.97438 * 11 10 8 34 34 H 1.08999 * 108.88480 * 236.84571 * 20 18 16 35 35 H 1.08999 * 108.88765 * 355.39482 * 20 18 16 36 36 H 1.08997 * 109.60428 * 150.02841 * 21 20 18 37 37 H 1.08994 * 109.60812 * 270.17498 * 21 20 18 38 38 H 1.09001 * 111.13270 * 76.47101 * 22 21 20 39 39 H 1.09003 * 111.13327 * 200.64373 * 22 21 20 40 40 H 1.08000 * 120.03509 * 179.75452 * 24 5 4 41 41 H 1.08004 * 119.96274 * 180.28070 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.2739 0.0000 0.0005 6 7 5.6731 0.0000 0.0005 7 6 6.4056 -0.4765 -1.1753 8 6 6.6568 0.6767 -2.1122 9 1 6.3062 1.6659 -1.8571 10 6 7.3296 0.4682 -3.2974 11 7 7.5440 1.4736 -4.1176 12 14 7.9366 -1.2426 -3.7383 13 1 6.8823 -1.9612 -4.4982 14 1 9.1606 -1.1339 -4.5720 15 1 8.2492 -1.9925 -2.4953 16 6 6.3471 0.4384 1.0823 17 8 7.5564 0.5248 1.0495 18 6 5.5979 0.8215 2.3325 19 1 4.6239 0.3326 2.3547 20 6 6.4130 0.4453 3.5802 21 6 6.8266 1.6686 4.3996 22 6 5.7548 2.7770 4.2266 23 16 5.4023 2.6426 2.4259 24 6 3.5780 -1.2018 -0.0053 25 6 2.1970 -1.1984 0.0000 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5139 29 1 1.6553 2.1328 0.0004 30 1 4.1163 2.1381 0.0010 31 1 5.8166 -1.2382 -1.6863 32 1 7.3580 -0.9039 -0.8615 33 1 8.0177 1.3270 -4.9513 34 1 5.8132 -0.2137 4.2080 35 1 7.3111 -0.0875 3.2676 36 1 6.9032 1.3950 5.4519 37 1 7.7913 2.0348 4.0486 38 1 4.8656 2.5597 4.8184 39 1 6.1601 3.7578 4.4756 40 1 4.1163 -2.1381 -0.0093 41 1 1.6552 -2.1327 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075196013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:11 Heat of formation + Delta-G solvation = -28.319696 kcal Electronic energy + Delta-G solvation = -23106.461171 eV Core-core repulsion = 19883.459334 eV Total energy + Delta-G solvation = -3223.001837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.59307 -39.82546 -37.13352 -36.45110 -34.88980 -32.68155 -32.01187 -31.44219 -29.81210 -27.20459 -26.52113 -24.57735 -23.50480 -22.95528 -21.77692 -20.47101 -19.18913 -18.93612 -18.08798 -17.27731 -16.65287 -16.52528 -16.17628 -15.96054 -15.63404 -15.17188 -15.07676 -14.78048 -14.49523 -14.45739 -14.33194 -13.84696 -13.75042 -13.45225 -13.11371 -13.01052 -12.86602 -12.68356 -12.54117 -12.49880 -12.34574 -12.12981 -11.94551 -11.80474 -11.68662 -11.13236 -10.93118 -10.87501 -10.07701 -9.87264 -9.15055 -8.81873 -8.38452 -6.44931 0.21084 0.40432 0.48055 1.26881 1.28321 1.31679 1.42099 1.88694 2.01320 2.26364 2.76362 2.94571 3.31920 3.46647 3.76373 3.95098 3.97101 4.06502 4.10181 4.13373 4.26778 4.47270 4.51353 4.54781 4.59852 4.66969 4.74308 4.79277 4.88839 4.92677 4.95825 4.96501 5.14531 5.16311 5.20486 5.34380 5.38575 5.44410 5.68928 5.70446 6.02847 6.15769 6.52487 6.55197 7.08266 7.21384 8.79129 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.010043 B = 0.006699 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.314481 B = 4178.971278 C = 5998.917863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.086 4.086 3 C -0.109 4.109 4 C -0.120 4.120 5 C 0.110 3.890 6 N -0.554 5.554 7 C 0.230 3.770 8 C -0.537 4.537 9 H 0.019 0.981 10 C 0.012 3.988 11 N -0.944 5.944 12 Si 0.950 3.050 13 H -0.250 1.250 14 H -0.277 1.277 15 H -0.251 1.251 16 C 0.522 3.478 17 O -0.563 6.563 18 C -0.047 4.047 19 H 0.123 0.877 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.054 4.054 23 S -0.315 6.315 24 C -0.126 4.126 25 C -0.104 4.104 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.140 0.860 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.030 0.970 33 H 0.270 0.730 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.060 0.940 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.133 0.867 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.520 -6.184 18.310 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.140 4.140 5 C 0.019 3.981 6 N -0.281 5.281 7 C 0.109 3.891 8 C -0.575 4.575 9 H 0.038 0.962 10 C -0.186 4.186 11 N -0.584 5.584 12 Si 0.771 3.229 13 H -0.174 1.174 14 H -0.202 1.202 15 H -0.175 1.175 16 C 0.309 3.691 17 O -0.441 6.441 18 C -0.178 4.178 19 H 0.141 0.859 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.202 4.202 23 S -0.089 6.089 24 C -0.145 4.145 25 C -0.122 4.122 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.158 0.842 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.141 0.859 37 H 0.079 0.921 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.150 0.850 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.049 -5.250 17.287 22.886 hybrid contribution 1.323 -0.602 -0.401 1.508 sum -12.726 -5.852 16.886 21.940 Atomic orbital electron populations 1.20830 0.88266 1.04174 1.03179 1.20328 0.97991 0.92173 0.98131 1.21095 0.92048 0.99414 1.00212 1.21292 0.95743 0.96308 1.00674 1.17930 0.81807 0.94688 1.03648 1.45497 1.04985 1.62548 1.15040 1.19446 0.92348 0.94418 0.82861 1.21406 1.37352 0.94779 1.04008 0.96224 1.25884 0.95079 1.02168 0.95496 1.70056 1.42644 1.33825 1.11834 0.85690 0.78966 0.78859 0.79368 1.17447 1.20196 1.17520 1.20615 0.87479 0.76226 0.84811 1.90636 1.15802 1.53782 1.83916 1.23757 1.03017 0.95325 0.95717 0.85882 1.22053 1.00375 1.00593 0.92713 1.22356 0.98349 0.92590 1.02361 1.24618 1.02724 1.03515 0.89294 1.88384 1.93341 1.08311 1.18866 1.21402 0.95549 0.96412 1.01144 1.21221 0.92235 0.99184 0.99532 0.90509 0.89566 0.90538 0.84207 0.88877 0.93397 0.95207 0.92120 0.87079 0.91235 0.85894 0.92147 0.86062 0.86001 0.84957 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.24 0.71 -0.83 16 2 C -0.09 -1.94 5.88 -19.84 -0.12 -2.06 16 3 C -0.11 -3.07 9.69 22.25 0.22 -2.85 16 4 C -0.12 -4.44 8.56 22.39 0.19 -4.25 16 5 C 0.11 4.18 3.84 38.15 0.15 4.33 16 6 N -0.55 -25.38 2.51 -635.30 -1.59 -26.97 16 7 C 0.23 12.04 4.14 85.63 0.35 12.39 16 8 C -0.54 -33.84 9.94 25.60 0.25 -33.58 16 9 H 0.02 1.40 8.06 -2.91 -0.02 1.38 16 10 C 0.01 0.73 5.47 84.66 0.46 1.19 16 11 N -0.94 -62.12 13.96 21.45 0.30 -61.82 16 12 Si 0.95 45.72 27.46 68.60 1.88 47.60 16 13 H -0.25 -11.05 7.11 99.48 0.71 -10.34 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 15 H -0.25 -11.50 6.55 99.48 0.65 -10.85 16 16 C 0.52 23.39 6.57 87.66 0.58 23.97 16 17 O -0.56 -29.88 15.58 -3.05 -0.05 -29.93 16 18 C -0.05 -1.54 2.74 30.09 0.08 -1.46 16 19 H 0.12 3.65 6.75 -2.39 -0.02 3.64 16 20 C -0.12 -2.98 5.87 30.81 0.18 -2.80 16 21 C -0.12 -2.36 6.34 31.31 0.20 -2.17 16 22 C -0.05 -1.06 7.52 72.72 0.55 -0.51 16 23 S -0.32 -10.41 21.34 -56.49 -1.21 -11.62 16 24 C -0.13 -3.77 9.68 22.39 0.22 -3.55 16 25 C -0.10 -2.37 9.69 22.25 0.22 -2.15 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 0.89 8.08 -2.39 -0.02 0.87 16 28 H 0.08 0.95 8.08 -2.38 -0.02 0.93 16 29 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.09 4.01 7.23 -2.91 -0.02 3.99 16 31 H 0.05 2.30 7.27 -2.38 -0.02 2.28 16 32 H 0.03 1.63 6.56 -2.39 -0.02 1.62 16 33 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16 34 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 2.10 6.97 -2.39 -0.02 2.09 16 36 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 41 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -83.81 347.91 4.54 -79.27 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.96 Total: 17.80 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 4.24 Total: -14.34 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -1.29 Total: -88.79 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.05 Total: -29.93 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.60 kcal Atomic # 16 Polarization: -10.41 SS G_CDS: -1.21 Total: -11.62 kcal Total: -83.81 4.54 -79.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075196013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.952 kcal (2) G-P(sol) polarization free energy of solvation -83.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds