Wall clock time and date at job start Tue Mar 31 2020 08:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47360 * 2 1 4 4 C 1.52997 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.55063 * 330.66551 * 4 3 2 6 6 C 1.53000 * 117.51962 * 116.36900 * 4 3 2 7 7 C 1.53000 * 117.49910 * 184.99904 * 4 3 2 8 8 H 1.09010 * 117.49446 * 359.97438 * 7 4 3 9 9 N 1.46492 * 117.50099 * 144.99793 * 7 4 3 10 10 C 1.34785 * 119.99760 * 204.72852 * 9 7 4 11 11 O 1.21543 * 120.00095 * 359.97438 * 10 9 7 12 12 C 1.47863 * 119.99922 * 179.97438 * 10 9 7 13 13 C 1.39684 * 120.09968 * 359.97438 * 12 10 9 14 14 C 1.38033 * 120.03588 * 180.02562 * 13 12 10 15 15 C 1.38179 * 120.24724 * 359.97438 * 14 13 12 16 16 C 1.39186 * 120.20173 * 0.02562 * 15 14 13 17 17 S 1.76196 * 120.02283 * 180.02562 * 16 15 14 18 18 C 1.76198 * 100.00075 * 265.48273 * 17 16 15 19 19 H 1.08003 * 119.99802 * 5.11255 * 18 17 16 20 20 C 1.38723 * 120.00131 * 185.11742 * 18 17 16 21 21 N 1.31628 * 120.00031 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00165 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47037 * 59.99890 * 22 20 18 24 24 H 1.48502 * 109.47249 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47046 * 299.99791 * 22 20 18 26 26 C 1.38872 * 119.95539 * 359.76575 * 16 15 14 27 27 H 1.09003 * 109.47452 * 300.00385 * 1 2 3 28 28 H 1.09002 * 109.47228 * 60.00183 * 1 2 3 29 29 H 1.09000 * 109.47869 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46814 * 239.99396 * 2 1 3 31 31 H 1.09008 * 109.46840 * 119.99695 * 2 1 3 32 32 H 1.08996 * 109.46789 * 59.99596 * 3 2 1 33 33 H 1.08998 * 109.46379 * 299.99807 * 3 2 1 34 34 H 1.08995 * 117.49646 * 359.97438 * 6 4 3 35 35 H 1.09004 * 117.50070 * 214.97120 * 6 4 3 36 36 H 0.96994 * 120.00373 * 24.99787 * 9 7 4 37 37 H 1.07998 * 119.97888 * 359.97438 * 13 12 10 38 38 H 1.08004 * 119.87707 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.90279 * 180.02562 * 15 14 13 40 40 H 0.97006 * 119.99802 * 180.02562 * 21 20 18 41 41 H 1.08000 * 120.12124 * 180.27407 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 4.0403 0.5850 0.4808 6 6 4.2765 2.0452 -1.2166 7 6 4.2766 2.7943 0.1175 8 1 3.6513 3.6839 0.1953 9 7 5.5334 2.8373 0.8690 10 6 5.9417 3.9910 1.4337 11 8 5.2675 4.9958 1.3190 12 6 7.2100 4.0344 2.1926 13 6 7.9862 2.8808 2.3261 14 6 9.1696 2.9226 3.0354 15 6 9.5922 4.1034 3.6154 16 6 8.8266 5.2589 3.4887 17 16 9.3702 6.7622 4.2297 18 6 8.5008 6.6809 5.7601 19 1 7.9258 5.8010 6.0084 20 6 8.5547 7.7471 6.6460 21 7 9.2558 8.8193 6.3435 22 14 7.6324 7.6612 8.2681 23 1 8.1325 6.5098 9.0615 24 1 7.8505 8.9178 9.0287 25 1 6.1815 7.4874 8.0040 26 6 7.6367 5.2274 2.7733 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 1.8932 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.6512 2.4416 -2.0165 35 1 5.2115 1.5843 -1.5351 36 1 6.0736 2.0366 0.9568 37 1 7.6598 1.9555 1.8749 38 1 9.7676 2.0290 3.1373 39 1 10.5193 4.1299 4.1688 40 1 9.2938 9.5646 6.9632 41 1 7.0428 6.1234 2.6696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079546853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:23 Heat of formation + Delta-G solvation = -8.758294 kcal Electronic energy + Delta-G solvation = -21056.227336 eV Core-core repulsion = 17834.073745 eV Total energy + Delta-G solvation = -3222.153591 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.11969 -38.47314 -37.45199 -34.75370 -32.92038 -32.50523 -30.71267 -30.42687 -27.53944 -25.56879 -24.14656 -22.53219 -22.27515 -21.51907 -21.01491 -20.29891 -18.29109 -17.35966 -16.66886 -15.80688 -15.50823 -15.16672 -14.86270 -14.83816 -14.71152 -14.22675 -14.00645 -13.58828 -13.42159 -13.18598 -12.96186 -12.66724 -12.35641 -12.29498 -11.73633 -11.65832 -11.43254 -11.18673 -11.15181 -11.13896 -11.07741 -11.07006 -10.71617 -10.32519 -9.99516 -9.79477 -9.15382 -9.04120 -8.87187 -8.57801 -8.04091 -6.71521 -6.28314 -4.02531 1.13331 1.64866 2.94180 2.94889 3.20448 3.23586 3.26807 3.45584 3.61633 4.08679 4.25635 4.32138 4.51095 4.64449 4.75149 4.76181 4.81081 4.96171 5.06715 5.08620 5.18155 5.21477 5.40066 5.46766 5.47440 5.49351 5.54175 5.65051 5.69019 5.76716 5.85669 5.86221 5.91037 5.96977 6.02603 6.23323 6.38884 6.56934 6.61659 6.91715 7.17190 7.44750 7.57394 8.25261 8.32529 9.17328 10.78333 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017519 B = 0.002741 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.853252 B =10213.692233 C =11048.320602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.159 4.159 5 H 0.106 0.894 6 C -0.190 4.190 7 C 0.087 3.913 8 H 0.138 0.862 9 N -0.704 5.704 10 C 0.568 3.432 11 O -0.532 6.532 12 C -0.155 4.155 13 C -0.090 4.090 14 C -0.141 4.141 15 C -0.054 4.054 16 C -0.107 4.107 17 S -0.034 6.034 18 C -0.520 4.520 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.018 4.018 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.400 0.600 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.270 0.730 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.547 -18.496 -12.905 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.127 4.127 4 C -0.179 4.179 5 H 0.124 0.876 6 C -0.228 4.228 7 C -0.019 4.019 8 H 0.155 0.845 9 N -0.355 5.355 10 C 0.357 3.643 11 O -0.408 6.408 12 C -0.159 4.159 13 C -0.109 4.109 14 C -0.161 4.161 15 C -0.075 4.075 16 C -0.218 4.218 17 S 0.201 5.799 18 C -0.668 4.668 19 H 0.093 0.907 20 C -0.136 4.136 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.198 1.198 26 C -0.039 4.039 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.235 0.765 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.080 0.920 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.227 -16.685 -13.274 23.232 hybrid contribution -1.088 -1.533 1.416 2.353 sum -10.315 -18.218 -11.858 24.060 Atomic orbital electron populations 1.21786 0.95870 1.01595 1.01922 1.21499 0.95744 0.96567 1.02039 1.21211 0.91839 0.97216 1.02459 1.22884 0.95472 0.97179 1.02344 0.87591 1.23627 1.02693 1.04227 0.92277 1.21699 0.88180 0.97094 0.94899 0.84458 1.45297 1.22996 1.12510 1.54693 1.18410 0.85272 0.82615 0.78009 1.90766 1.56133 1.33901 1.60036 1.19828 0.95901 0.95748 1.04465 1.21124 0.94917 0.96383 0.98484 1.21056 0.96926 0.98290 0.99799 1.21973 0.99017 0.91330 0.95226 1.22866 0.96614 1.01783 1.00488 1.83605 1.60712 1.17171 1.18451 1.22792 1.36371 1.05698 1.01911 0.90670 1.25002 0.95377 0.94282 0.98908 1.69981 1.38423 1.05509 1.36627 0.86174 0.80045 0.77669 0.81424 1.19834 1.20722 1.19774 1.21959 0.94238 0.96744 0.91000 0.92652 0.92740 0.92800 0.91955 0.92001 0.91283 0.91536 0.87999 0.88577 0.76462 0.86597 0.85827 0.85021 0.91993 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.76 5.89 -26.73 -0.16 -0.92 16 3 C -0.09 -0.65 5.50 -26.73 -0.15 -0.80 16 4 C -0.16 -1.25 5.66 -90.62 -0.51 -1.76 16 5 H 0.11 0.76 8.07 -51.93 -0.42 0.34 16 6 C -0.19 -1.51 10.10 -26.73 -0.27 -1.78 16 7 C 0.09 0.93 6.15 -67.93 -0.42 0.51 16 8 H 0.14 1.70 7.40 -51.92 -0.38 1.31 16 9 N -0.70 -8.34 5.52 -54.74 -0.30 -8.64 16 10 C 0.57 9.29 7.77 -12.32 -0.10 9.19 16 11 O -0.53 -10.65 15.91 5.33 0.08 -10.57 16 12 C -0.15 -2.61 5.87 -104.99 -0.62 -3.23 16 13 C -0.09 -1.23 9.54 -39.12 -0.37 -1.60 16 14 C -0.14 -2.00 10.02 -39.68 -0.40 -2.40 16 15 C -0.05 -0.97 9.79 -39.25 -0.38 -1.35 16 16 C -0.11 -2.29 5.45 -39.00 -0.21 -2.50 16 17 S -0.03 -0.88 21.41 -107.50 -2.30 -3.18 16 18 C -0.52 -14.73 9.46 30.91 0.29 -14.44 16 19 H 0.08 2.11 7.79 -52.48 -0.41 1.70 16 20 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 21 N -0.87 -25.51 13.22 55.49 0.73 -24.78 16 22 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 C -0.02 -0.36 9.34 -38.92 -0.36 -0.73 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.46 7.88 -51.93 -0.41 0.05 16 34 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.40 3.60 6.85 -40.82 -0.28 3.32 16 37 H 0.12 1.10 6.40 -52.49 -0.34 0.76 16 38 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.14 3.09 7.65 -52.49 -0.40 2.69 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -32.35 364.38 -10.70 -43.05 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.00 Total: 2.52 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -3.38 Total: -20.40 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.43 Total: -33.42 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.30 Total: -3.18 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.35 -10.70 -43.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079546853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.291 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds