Wall clock time and date at job start Tue Mar 31 2020 08:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47360 * 2 1 4 4 C 1.52997 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.55063 * 330.66551 * 4 3 2 6 6 C 1.53000 * 117.51962 * 116.36900 * 4 3 2 7 7 C 1.53000 * 117.49910 * 184.99904 * 4 3 2 8 8 H 1.09010 * 117.49446 * 359.97438 * 7 4 3 9 9 N 1.46492 * 117.50099 * 144.99793 * 7 4 3 10 10 C 1.34785 * 119.99760 * 204.72852 * 9 7 4 11 11 O 1.21543 * 120.00095 * 359.97438 * 10 9 7 12 12 C 1.47863 * 119.99922 * 179.97438 * 10 9 7 13 13 C 1.39684 * 120.09968 * 359.97438 * 12 10 9 14 14 C 1.38033 * 120.03588 * 180.02562 * 13 12 10 15 15 C 1.38179 * 120.24724 * 359.97438 * 14 13 12 16 16 C 1.39186 * 120.20173 * 0.02562 * 15 14 13 17 17 S 1.76196 * 120.02283 * 180.02562 * 16 15 14 18 18 C 1.76198 * 100.00075 * 265.48273 * 17 16 15 19 19 H 1.08003 * 119.99802 * 5.11255 * 18 17 16 20 20 C 1.38723 * 120.00131 * 185.11742 * 18 17 16 21 21 N 1.31628 * 120.00031 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00165 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47037 * 59.99890 * 22 20 18 24 24 H 1.48502 * 109.47249 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47046 * 299.99791 * 22 20 18 26 26 C 1.38872 * 119.95539 * 359.76575 * 16 15 14 27 27 H 1.09003 * 109.47452 * 300.00385 * 1 2 3 28 28 H 1.09002 * 109.47228 * 60.00183 * 1 2 3 29 29 H 1.09000 * 109.47869 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46814 * 239.99396 * 2 1 3 31 31 H 1.09008 * 109.46840 * 119.99695 * 2 1 3 32 32 H 1.08996 * 109.46789 * 59.99596 * 3 2 1 33 33 H 1.08998 * 109.46379 * 299.99807 * 3 2 1 34 34 H 1.08995 * 117.49646 * 359.97438 * 6 4 3 35 35 H 1.09004 * 117.50070 * 214.97120 * 6 4 3 36 36 H 0.96994 * 120.00373 * 24.99787 * 9 7 4 37 37 H 1.07998 * 119.97888 * 359.97438 * 13 12 10 38 38 H 1.08004 * 119.87707 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.90279 * 180.02562 * 15 14 13 40 40 H 0.97006 * 119.99802 * 180.02562 * 21 20 18 41 41 H 1.08000 * 120.12124 * 180.27407 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 4.0403 0.5850 0.4808 6 6 4.2765 2.0452 -1.2166 7 6 4.2766 2.7943 0.1175 8 1 3.6513 3.6839 0.1953 9 7 5.5334 2.8373 0.8690 10 6 5.9417 3.9910 1.4337 11 8 5.2675 4.9958 1.3190 12 6 7.2100 4.0344 2.1926 13 6 7.9862 2.8808 2.3261 14 6 9.1696 2.9226 3.0354 15 6 9.5922 4.1034 3.6154 16 6 8.8266 5.2589 3.4887 17 16 9.3702 6.7622 4.2297 18 6 8.5008 6.6809 5.7601 19 1 7.9258 5.8010 6.0084 20 6 8.5547 7.7471 6.6460 21 7 9.2558 8.8193 6.3435 22 14 7.6324 7.6612 8.2681 23 1 8.1325 6.5098 9.0615 24 1 7.8505 8.9178 9.0287 25 1 6.1815 7.4874 8.0040 26 6 7.6367 5.2274 2.7733 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 1.8932 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.6512 2.4416 -2.0165 35 1 5.2115 1.5843 -1.5351 36 1 6.0736 2.0366 0.9568 37 1 7.6598 1.9555 1.8749 38 1 9.7676 2.0290 3.1373 39 1 10.5193 4.1299 4.1688 40 1 9.2938 9.5646 6.9632 41 1 7.0428 6.1234 2.6696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079546853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:23 Heat of formation + Delta-G solvation = -27.727710 kcal Electronic energy + Delta-G solvation = -21057.049912 eV Core-core repulsion = 17834.073745 eV Total energy + Delta-G solvation = -3222.976167 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.32227 -39.52602 -38.57748 -35.51523 -34.66195 -33.88455 -32.03528 -31.73557 -28.13035 -27.75207 -25.36343 -23.79554 -22.97470 -22.41279 -21.88540 -21.29544 -19.99384 -18.95830 -17.70502 -17.04174 -16.94074 -16.64568 -16.09775 -16.04408 -15.80969 -15.38077 -15.21211 -14.84249 -14.62819 -14.21889 -13.90368 -13.80729 -13.32501 -13.22749 -13.11857 -12.97064 -12.93518 -12.65816 -12.41141 -12.38280 -11.99237 -11.80062 -11.77039 -11.65917 -11.29014 -11.20090 -10.93446 -10.75144 -10.06449 -9.76317 -9.63247 -8.81698 -8.40002 -6.20293 -0.21131 0.23801 1.28473 1.38124 1.44090 1.62306 1.72708 1.95361 2.23515 2.73021 2.92871 2.94150 3.40650 3.55708 3.68449 3.82112 3.92665 3.99059 4.03922 4.20956 4.29616 4.32637 4.39075 4.46406 4.62353 4.65639 4.80300 4.87396 4.90494 4.94001 4.98497 5.04269 5.19554 5.19985 5.30525 5.33661 5.37096 5.39047 5.45777 5.49258 5.51673 5.84903 6.14532 6.42339 7.00049 7.10295 8.66837 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017519 B = 0.002741 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.853252 B =10213.692233 C =11048.320602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.092 4.092 4 C -0.137 4.137 5 H 0.124 0.876 6 C -0.170 4.170 7 C 0.050 3.950 8 H 0.110 0.890 9 N -0.678 5.678 10 C 0.564 3.436 11 O -0.583 6.583 12 C -0.157 4.157 13 C -0.062 4.062 14 C -0.120 4.120 15 C -0.062 4.062 16 C -0.130 4.130 17 S -0.095 6.095 18 C -0.537 4.537 19 H 0.067 0.933 20 C 0.019 3.981 21 N -0.906 5.906 22 Si 0.992 3.008 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.045 4.045 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.417 0.583 37 H 0.174 0.826 38 H 0.177 0.823 39 H 0.136 0.864 40 H 0.274 0.726 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 -23.148 -13.554 28.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.154 4.154 3 C -0.130 4.130 4 C -0.156 4.156 5 H 0.141 0.859 6 C -0.208 4.208 7 C -0.056 4.056 8 H 0.128 0.872 9 N -0.329 5.329 10 C 0.353 3.647 11 O -0.464 6.464 12 C -0.162 4.162 13 C -0.081 4.081 14 C -0.139 4.139 15 C -0.083 4.083 16 C -0.241 4.241 17 S 0.140 5.860 18 C -0.684 4.684 19 H 0.085 0.915 20 C -0.186 4.186 21 N -0.542 5.542 22 Si 0.813 3.187 23 H -0.184 1.184 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.067 4.067 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.256 0.744 37 H 0.192 0.808 38 H 0.195 0.805 39 H 0.154 0.846 40 H 0.083 0.917 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.638 -21.400 -13.951 27.303 hybrid contribution -1.009 -0.248 1.451 1.785 sum -10.647 -21.648 -12.500 27.171 Atomic orbital electron populations 1.21802 0.95829 1.02002 1.01730 1.21470 0.95796 0.95651 1.02527 1.21245 0.91650 0.98012 1.02079 1.22949 0.95595 0.95458 1.01614 0.85853 1.23713 1.03402 1.02337 0.91391 1.21770 0.88039 0.97991 0.97767 0.87246 1.45041 1.23276 1.11502 1.53101 1.18404 0.84870 0.83232 0.78188 1.90746 1.57509 1.36024 1.62096 1.19924 0.96677 0.95547 1.04041 1.21714 0.93356 0.96828 0.96160 1.21564 0.96958 0.98186 0.97202 1.22094 0.98828 0.91491 0.95851 1.22510 0.98366 1.00680 1.02538 1.83479 1.61430 1.22256 1.18843 1.23028 1.36464 1.05759 1.03151 0.91470 1.26019 0.96141 0.93724 1.02749 1.70106 1.39755 1.06241 1.38097 0.85099 0.78374 0.78440 0.76742 1.18447 1.19509 1.19602 1.21627 0.94298 0.97406 0.93392 0.93247 0.92610 0.92095 0.91075 0.91812 0.92499 0.91293 0.87313 0.86916 0.74351 0.80839 0.80527 0.84609 0.91678 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.17 5.89 30.59 0.18 -0.99 16 3 C -0.09 -1.15 5.50 30.59 0.17 -0.98 16 4 C -0.14 -1.72 5.66 -10.79 -0.06 -1.78 16 5 H 0.12 1.19 8.07 -2.39 -0.02 1.17 16 6 C -0.17 -2.15 10.10 30.59 0.31 -1.84 16 7 C 0.05 0.98 6.15 44.99 0.28 1.25 16 8 H 0.11 2.80 7.40 -2.38 -0.02 2.78 16 9 N -0.68 -14.37 5.52 -445.39 -2.46 -16.83 16 10 C 0.56 18.30 7.77 86.79 0.67 18.98 16 11 O -0.58 -24.66 15.91 -3.85 -0.06 -24.72 16 12 C -0.16 -5.17 5.87 -20.11 -0.12 -5.29 16 13 C -0.06 -1.41 9.54 22.57 0.22 -1.19 16 14 C -0.12 -2.85 10.02 22.21 0.22 -2.63 16 15 C -0.06 -2.14 9.79 22.48 0.22 -1.92 16 16 C -0.13 -5.79 5.45 22.65 0.12 -5.67 16 17 S -0.09 -5.24 21.41 -56.49 -1.21 -6.45 16 18 C -0.54 -31.86 9.46 67.94 0.64 -31.22 16 19 H 0.07 3.94 7.79 -2.91 -0.02 3.91 16 20 C 0.02 1.10 5.49 84.84 0.47 1.57 16 21 N -0.91 -55.16 13.22 21.63 0.29 -54.87 16 22 Si 0.99 45.05 29.55 68.60 2.03 47.08 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 26 C -0.05 -1.96 9.34 22.70 0.21 -1.75 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.61 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.83 7.88 -2.39 -0.02 0.81 16 34 H 0.11 1.26 8.03 -2.39 -0.02 1.24 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.10 16 36 H 0.42 5.47 6.85 -92.71 -0.64 4.83 16 37 H 0.17 1.97 6.40 -2.91 -0.02 1.95 16 38 H 0.18 2.49 8.06 -2.91 -0.02 2.46 16 39 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 41 H 0.10 5.02 7.65 -2.91 -0.02 5.00 16 Total: -1.00 -78.15 364.38 3.22 -74.93 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.39 Total: 15.19 kcal Atomic # 6 Polarization: -38.57 SS G_CDS: 4.25 Total: -34.32 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -2.17 Total: -71.70 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.06 Total: -24.72 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -1.21 Total: -6.45 kcal Total: -78.15 3.22 -74.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079546853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.198 kcal (2) G-P(sol) polarization free energy of solvation -78.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds