Wall clock time and date at job start Tue Mar 31 2020 08:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46929 * 2 1 4 4 N 1.46493 * 109.47208 * 180.02562 * 3 2 1 5 5 C 1.37097 * 120.00233 * 95.45329 * 4 3 2 6 6 H 1.07997 * 120.00059 * 215.97489 * 5 4 3 7 7 C 1.38950 * 119.99874 * 35.97971 * 5 4 3 8 8 N 1.31415 * 119.99634 * 21.53081 * 7 5 4 9 9 Si 1.86797 * 120.00242 * 201.53004 * 7 5 4 10 10 H 1.48498 * 109.47225 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47254 * 300.00282 * 9 7 5 12 12 H 1.48502 * 109.47000 * 60.00017 * 9 7 5 13 13 C 1.34776 * 119.99768 * 275.45649 * 4 3 2 14 14 O 1.21294 * 120.00186 * 5.59659 * 13 4 3 15 15 C 1.50703 * 119.99819 * 185.59857 * 13 4 3 16 16 H 1.09007 * 109.30869 * 330.76536 * 15 13 4 17 17 S 1.81320 * 109.31390 * 90.19057 * 15 13 4 18 18 C 1.82065 * 100.85195 * 166.28419 * 17 15 13 19 19 C 1.52150 * 107.74987 * 296.01152 * 18 17 15 20 20 C 1.50227 * 113.58338 * 52.94812 * 19 18 17 21 21 C 1.39942 * 114.47375 * 159.88731 * 20 19 18 22 22 C 1.37454 * 121.51752 * 178.13089 * 21 20 19 23 23 C 1.38288 * 119.51492 * 0.08076 * 22 21 20 24 24 C 1.37572 * 119.26029 * 0.43290 * 23 22 21 25 25 C 1.36944 * 126.71495 * 338.79961 * 20 19 18 26 26 H 1.08995 * 109.47084 * 299.99457 * 1 2 3 27 27 H 1.09001 * 109.47370 * 59.99877 * 1 2 3 28 28 H 1.09002 * 109.46620 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47084 * 240.00543 * 2 1 3 30 30 H 1.08995 * 109.47481 * 119.99700 * 2 1 3 31 31 H 1.08998 * 109.47251 * 60.00154 * 3 2 1 32 32 H 1.09001 * 109.47195 * 300.00230 * 3 2 1 33 33 H 0.97006 * 119.99877 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.80868 * 176.44905 * 18 17 15 35 35 H 1.09004 * 109.85271 * 55.59538 * 18 17 15 36 36 H 1.09001 * 108.65746 * 291.89278 * 19 18 17 37 37 H 1.08998 * 108.66602 * 174.01597 * 19 18 17 38 38 H 1.07998 * 119.23665 * 358.13908 * 21 20 19 39 39 H 1.08005 * 120.23982 * 180.11344 * 22 21 20 40 40 H 1.07995 * 120.37016 * 180.40103 * 23 22 21 41 41 H 1.08002 * 119.33101 * 179.86567 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1900 1.5557 -1.1828 6 1 5.1154 1.0173 -1.3242 7 6 3.6936 2.3630 -2.1989 8 7 2.8422 3.3239 -1.9180 9 14 4.2363 2.0826 -3.9641 10 1 3.5673 3.0686 -4.8503 11 1 5.7089 2.2480 -4.0615 12 1 3.8639 0.7077 -4.3840 13 6 4.1793 1.3315 1.1610 14 8 3.5776 1.1297 2.1947 15 6 5.6809 1.4580 1.1756 16 1 6.0803 1.1218 0.2187 17 16 6.1339 3.1948 1.4324 18 6 7.9027 3.0322 1.8319 19 6 8.0146 2.2504 3.1324 20 6 7.2741 0.9435 3.1135 21 6 7.7000 0.0218 4.0766 22 6 7.0967 -1.2057 4.2128 23 6 6.0452 -1.5441 3.3809 24 6 5.6285 -0.6468 2.4249 25 6 6.2433 0.5985 2.2805 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 2.4954 3.8873 -2.6274 34 1 8.3458 4.0204 1.9559 35 1 8.4148 2.4955 1.0332 36 1 7.6198 2.8632 3.9428 37 1 9.0678 2.0517 3.3305 38 1 8.5216 0.2811 4.7278 39 1 7.4411 -1.9006 4.9645 40 1 5.5570 -2.5023 3.4801 41 1 4.8088 -0.9108 1.7731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079687104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:04 Heat of formation + Delta-G solvation = -24.283072 kcal Electronic energy + Delta-G solvation = -23418.067076 eV Core-core repulsion = 20195.240280 eV Total energy + Delta-G solvation = -3222.826796 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.19091 -39.92178 -37.07123 -35.35741 -34.69059 -33.63821 -33.00384 -30.64572 -28.98784 -27.50386 -26.28665 -24.71350 -23.50453 -22.41689 -21.47800 -21.06081 -18.99818 -18.07169 -17.54763 -17.33859 -16.61197 -16.27117 -16.17171 -16.04407 -15.71240 -15.49337 -15.02557 -14.64590 -14.41625 -14.03004 -13.98304 -13.82055 -13.51476 -13.34133 -13.21668 -13.01934 -12.89553 -12.62890 -12.47971 -12.40466 -12.14512 -12.10180 -11.98135 -11.76823 -11.56351 -11.01568 -10.84851 -10.43407 -9.64503 -9.52549 -9.49097 -8.65036 -8.32933 -6.07960 0.30606 0.46595 0.59886 1.42575 1.46365 1.54706 1.55597 2.19516 2.29268 2.69613 2.95140 3.05425 3.55912 3.78544 3.88750 4.02802 4.13475 4.21114 4.22815 4.25349 4.31034 4.31468 4.51887 4.55363 4.60193 4.72898 4.77792 4.81979 4.92447 4.94605 5.04792 5.05816 5.17223 5.19379 5.31015 5.40248 5.50426 5.55593 5.59084 5.65772 5.94075 6.11210 6.36078 7.08424 7.49497 7.93183 8.69716 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.014026 B = 0.006052 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.817285 B = 4625.363170 C = 5733.896223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 C 0.121 3.879 4 N -0.435 5.435 5 C -0.358 4.358 6 H 0.090 0.910 7 C 0.014 3.986 8 N -0.883 5.883 9 Si 0.978 3.022 10 H -0.280 1.280 11 H -0.264 1.264 12 H -0.266 1.266 13 C 0.479 3.521 14 O -0.616 6.616 15 C -0.008 4.008 16 H 0.103 0.897 17 S -0.271 6.271 18 C -0.075 4.075 19 C -0.075 4.075 20 C -0.085 4.085 21 C -0.124 4.124 22 C -0.114 4.114 23 C -0.132 4.132 24 C -0.109 4.109 25 C -0.084 4.084 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.026 0.974 32 H 0.093 0.907 33 H 0.274 0.726 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.138 0.862 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.216 -5.741 5.957 13.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.163 4.163 3 C -0.002 4.002 4 N -0.152 5.152 5 C -0.486 4.486 6 H 0.107 0.893 7 C -0.191 4.191 8 N -0.519 5.519 9 Si 0.801 3.199 10 H -0.205 1.205 11 H -0.189 1.189 12 H -0.191 1.191 13 C 0.266 3.734 14 O -0.503 6.503 15 C -0.139 4.139 16 H 0.121 0.879 17 S -0.043 6.043 18 C -0.223 4.223 19 C -0.113 4.113 20 C -0.085 4.085 21 C -0.142 4.142 22 C -0.132 4.132 23 C -0.150 4.150 24 C -0.129 4.129 25 C -0.086 4.086 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.156 0.844 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.141 0.859 38 H 0.176 0.824 39 H 0.176 0.824 40 H 0.156 0.844 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.139 -4.685 6.241 12.018 hybrid contribution 0.176 -0.832 -1.128 1.413 sum 9.315 -5.517 5.112 11.973 Atomic orbital electron populations 1.21604 0.93464 1.02432 1.01749 1.21721 0.97405 0.96662 1.00488 1.21395 0.80966 0.96416 1.01439 1.43657 1.05279 1.61243 1.05033 1.19527 1.09587 1.28287 0.91179 0.89251 1.26114 0.96601 0.92446 1.03896 1.70051 1.31597 1.15365 1.34841 0.85231 0.79036 0.78402 0.77240 1.20493 1.18863 1.19063 1.19848 0.88417 0.81612 0.83477 1.90510 1.70203 1.56167 1.33458 1.21741 0.96661 0.94920 1.00590 0.87930 1.87467 1.14795 1.09510 1.92520 1.23497 0.91739 1.06164 1.00886 1.20474 1.01836 0.91893 0.97067 1.19745 0.95498 0.97677 0.95614 1.21652 1.01237 0.93475 0.97825 1.21371 0.95371 0.97351 0.99060 1.21236 0.98290 0.99699 0.95799 1.21209 0.98172 0.94021 0.99469 1.19226 0.97151 0.94728 0.97456 0.93071 0.92369 0.90773 0.92467 0.94171 0.95556 0.88867 0.91655 0.84429 0.88873 0.89411 0.85890 0.82434 0.82397 0.84403 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.91 71.98 0.71 -3.83 16 2 C -0.12 -5.29 6.22 30.60 0.19 -5.10 16 3 C 0.12 6.14 4.85 86.38 0.42 6.56 16 4 N -0.44 -23.06 2.54 -635.55 -1.62 -24.67 16 5 C -0.36 -18.61 8.56 84.04 0.72 -17.89 16 6 H 0.09 4.49 6.46 -2.91 -0.02 4.47 16 7 C 0.01 0.71 4.91 84.93 0.42 1.13 16 8 N -0.88 -47.49 11.44 21.66 0.25 -47.24 16 9 Si 0.98 39.63 29.60 68.60 2.03 41.66 16 10 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 12 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 13 C 0.48 25.02 5.41 87.66 0.47 25.50 16 14 O -0.62 -34.93 14.88 -3.07 -0.05 -34.97 16 15 C -0.01 -0.37 2.50 29.15 0.07 -0.30 16 16 H 0.10 4.68 6.11 -2.39 -0.01 4.66 16 17 S -0.27 -11.33 21.67 -56.49 -1.22 -12.55 16 18 C -0.08 -2.00 6.57 71.70 0.47 -1.53 16 19 C -0.07 -1.76 5.29 29.42 0.16 -1.60 16 20 C -0.08 -2.59 5.74 -19.90 -0.11 -2.71 16 21 C -0.12 -2.99 9.39 22.50 0.21 -2.78 16 22 C -0.11 -2.74 10.05 22.10 0.22 -2.52 16 23 C -0.13 -4.00 10.07 22.12 0.22 -3.78 16 24 C -0.11 -4.25 8.17 22.45 0.18 -4.07 16 25 C -0.08 -3.28 5.22 -19.78 -0.10 -3.38 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.04 1.80 8.02 -2.39 -0.02 1.78 16 31 H 0.03 1.42 7.68 -2.39 -0.02 1.40 16 32 H 0.09 4.93 5.48 -2.39 -0.01 4.91 16 33 H 0.27 13.83 8.31 -92.70 -0.77 13.06 16 34 H 0.14 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.12 1.86 7.97 -2.39 -0.02 1.84 16 38 H 0.16 2.48 7.94 -2.91 -0.02 2.46 16 39 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 40 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 41 H 0.09 3.84 6.76 -2.91 -0.02 3.82 16 Total: -1.00 -68.98 342.14 4.67 -64.31 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 1.02 Total: 29.76 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 4.26 Total: -16.29 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -1.37 Total: -71.92 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.05 Total: -34.97 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: -11.33 SS G_CDS: -1.22 Total: -12.55 kcal Total: -68.98 4.67 -64.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079687104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.027 kcal (2) G-P(sol) polarization free energy of solvation -68.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds