Wall clock time and date at job start Tue Mar 31 2020 08:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47411 * 2 1 4 4 N 1.46501 * 109.47222 * 180.02562 * 3 2 1 5 5 C 1.36941 * 120.00174 * 275.65756 * 4 3 2 6 6 H 1.07999 * 119.99673 * 34.01431 * 5 4 3 7 7 C 1.38807 * 120.00317 * 214.00901 * 5 4 3 8 8 N 1.31623 * 119.99720 * 22.90682 * 7 5 4 9 9 Si 1.86796 * 120.00373 * 202.90622 * 7 5 4 10 10 H 1.48499 * 109.46823 * 60.00031 * 9 7 5 11 11 H 1.48500 * 109.47538 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47054 * 300.00043 * 9 7 5 13 13 C 1.46499 * 119.99900 * 95.65917 * 4 3 2 14 14 C 1.50701 * 109.46997 * 269.99904 * 13 4 3 15 15 C 1.38268 * 119.97719 * 270.32167 * 14 13 4 16 16 C 1.38172 * 120.02655 * 180.27744 * 15 14 13 17 17 C 1.38475 * 119.97417 * 359.42477 * 16 15 14 18 18 F 1.35108 * 120.02886 * 180.25262 * 17 16 15 19 19 C 1.38443 * 119.95041 * 0.27651 * 17 16 15 20 20 C 1.50704 * 120.01514 * 180.02562 * 19 17 16 21 21 F 1.39896 * 109.46784 * 179.97438 * 20 19 17 22 22 F 1.39899 * 109.47055 * 299.99916 * 20 19 17 23 23 F 1.39901 * 109.46752 * 59.99850 * 20 19 17 24 24 C 1.38219 * 119.96889 * 359.97438 * 19 17 16 25 25 H 1.09001 * 109.47156 * 59.99322 * 1 2 3 26 26 H 1.08997 * 109.47434 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46722 * 299.99826 * 1 2 3 28 28 H 1.09005 * 109.46985 * 239.99854 * 2 1 3 29 29 H 1.09001 * 109.47156 * 120.00678 * 2 1 3 30 30 H 1.09005 * 109.46679 * 60.00560 * 3 2 1 31 31 H 1.09001 * 109.47514 * 300.00458 * 3 2 1 32 32 H 0.96999 * 120.00003 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46895 * 149.99936 * 13 4 3 34 34 H 1.08994 * 109.47042 * 29.99718 * 13 4 3 35 35 H 1.08006 * 119.98735 * 0.02562 * 15 14 13 36 36 H 1.08006 * 120.01345 * 179.69569 * 16 15 14 37 37 H 1.08007 * 119.98412 * 180.02562 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.3253 1.1792 6 1 3.7891 0.7202 1.9788 7 6 5.4004 1.9841 1.3474 8 7 5.6811 3.0417 0.6159 9 14 6.6304 1.3700 2.6119 10 1 7.0235 -0.0239 2.2837 11 1 7.8332 2.2407 2.5962 12 1 6.0122 1.4051 3.9617 13 6 4.2370 1.5676 -1.2635 14 6 4.4878 0.1967 -1.8368 15 6 5.6372 -0.4937 -1.4989 16 6 5.8710 -1.7483 -2.0284 17 6 4.9480 -2.3192 -2.8885 18 9 5.1731 -3.5481 -3.4029 19 6 3.7946 -1.6297 -3.2213 20 6 2.7889 -2.2499 -4.1567 21 9 1.7169 -1.3697 -4.3388 22 9 3.3963 -2.5073 -5.3903 23 9 2.3197 -3.4485 -3.6087 24 6 3.5654 -0.3726 -2.6944 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 6.5265 3.5024 0.7337 33 1 5.1895 2.0661 -1.0834 34 1 3.6476 2.1539 -1.9684 35 1 6.3545 -0.0504 -0.8239 36 1 6.7712 -2.2854 -1.7682 37 1 2.6654 0.1655 -2.9535 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398260.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:33 Heat of formation + Delta-G solvation = -162.083524 kcal Electronic energy + Delta-G solvation = -26132.532846 eV Core-core repulsion = 21795.660658 eV Total energy + Delta-G solvation = -4336.872189 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.08180 -48.81827 -47.53209 -47.49706 -39.05143 -36.16620 -33.18938 -31.91410 -31.43970 -30.08031 -26.09260 -25.68729 -25.60003 -22.61988 -22.24167 -20.94125 -20.21083 -18.38910 -18.33177 -18.10951 -17.08474 -16.69603 -16.02149 -15.51597 -14.98031 -14.55102 -14.40145 -14.36405 -14.28346 -13.94473 -13.91888 -13.85374 -13.67095 -13.56770 -13.33370 -13.05135 -12.79086 -12.44224 -12.13422 -11.70901 -11.65062 -11.32347 -11.08233 -11.02509 -10.77517 -10.55096 -10.53110 -10.17388 -10.11190 -9.84607 -9.03698 -8.66426 -8.25883 -6.81151 -5.98254 -3.50505 1.11640 1.42035 2.76579 3.24957 3.32770 3.34885 3.69926 3.80735 4.08512 4.33881 4.35376 4.53318 4.95495 5.10067 5.36230 5.39060 5.49114 5.57796 5.61765 5.73207 5.85477 6.01314 6.12520 6.18679 6.29921 6.39386 6.41027 6.47648 6.54919 6.58592 6.87839 6.98397 7.05983 7.11515 7.44174 7.66715 8.31115 8.98631 9.61686 10.17633 11.01884 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.005645 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.448823 B = 4958.817630 C = 5984.488857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.147 3.853 4 N -0.574 5.574 5 C -0.254 4.254 6 H 0.063 0.937 7 C 0.010 3.990 8 N -0.883 5.883 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.280 1.280 13 C 0.168 3.832 14 C -0.079 4.079 15 C -0.041 4.041 16 C -0.157 4.157 17 C 0.119 3.881 18 F -0.138 7.138 19 C -0.227 4.227 20 C 0.514 3.486 21 F -0.176 7.176 22 F -0.179 7.179 23 F -0.177 7.177 24 C -0.049 4.049 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.258 0.742 33 H 0.115 0.885 34 H 0.040 0.960 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 -6.943 -7.407 10.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.021 3.979 4 N -0.292 5.292 5 C -0.384 4.384 6 H 0.081 0.919 7 C -0.190 4.190 8 N -0.524 5.524 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.206 1.206 13 C 0.041 3.959 14 C -0.082 4.082 15 C -0.060 4.060 16 C -0.175 4.175 17 C 0.099 3.901 18 F -0.116 7.116 19 C -0.229 4.229 20 C 0.459 3.541 21 F -0.157 7.157 22 F -0.160 7.160 23 F -0.159 7.159 24 C -0.068 4.068 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.059 0.941 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.334 -6.817 -7.403 10.601 hybrid contribution 0.524 -0.906 0.437 1.134 sum -2.811 -7.722 -6.966 10.773 Atomic orbital electron populations 1.21721 0.97223 1.00509 1.01064 1.22176 0.93944 1.00850 1.01666 1.20965 0.84681 0.93104 0.99182 1.43789 0.99545 1.83954 1.01935 1.19036 1.03079 1.23300 0.92948 0.91896 1.25075 1.00621 0.94932 0.98370 1.69955 1.23911 1.16433 1.42150 0.86526 0.80988 0.78581 0.81785 1.20696 1.21421 1.20550 1.20208 1.01640 0.87944 0.86079 1.21477 0.92047 1.01677 0.93049 1.21266 0.97077 0.92258 0.95442 1.21135 0.99782 0.97460 0.99160 1.17143 0.94727 0.80898 0.97305 1.91502 1.94675 1.40045 1.85385 1.19932 0.96790 0.99416 1.06786 1.18147 0.80327 0.76134 0.79451 1.93158 1.58122 1.68854 1.95568 1.93201 1.83100 1.94248 1.45446 1.93209 1.89516 1.47645 1.85509 1.20846 0.99403 0.91702 0.94855 0.93353 0.93777 0.93188 0.92835 0.92452 0.93399 0.94477 0.93152 0.86798 0.94124 0.84217 0.84474 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.15 -2.54 6.22 -26.74 -0.17 -2.71 16 3 C 0.15 2.83 5.72 -4.04 -0.02 2.81 16 4 N -0.57 -12.74 2.44 -174.61 -0.43 -13.17 16 5 C -0.25 -6.26 9.48 -15.06 -0.14 -6.40 16 6 H 0.06 1.58 7.93 -52.49 -0.42 1.17 16 7 C 0.01 0.26 4.95 -17.43 -0.09 0.17 16 8 N -0.88 -22.84 11.31 55.49 0.63 -22.21 16 9 Si 0.89 19.74 29.61 -169.99 -5.03 14.70 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 C 0.17 3.45 5.46 -5.19 -0.03 3.42 16 14 C -0.08 -1.43 5.44 -104.62 -0.57 -2.00 16 15 C -0.04 -0.72 9.70 -39.59 -0.38 -1.11 16 16 C -0.16 -2.45 10.03 -39.52 -0.40 -2.84 16 17 C 0.12 1.94 7.13 -39.42 -0.28 1.66 16 18 F -0.14 -2.22 16.47 2.25 0.04 -2.18 16 19 C -0.23 -3.68 5.38 -104.55 -0.56 -4.24 16 20 C 0.51 7.91 3.03 36.01 0.11 8.02 16 21 F -0.18 -2.59 15.97 2.25 0.04 -2.56 16 22 F -0.18 -2.73 17.05 2.25 0.04 -2.69 16 23 F -0.18 -2.81 17.06 2.25 0.04 -2.77 16 24 C -0.05 -0.81 7.25 -39.60 -0.29 -1.10 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.95 6.13 -51.93 -0.32 0.63 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 31 H 0.04 0.67 7.83 -51.93 -0.41 0.26 16 32 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 33 H 0.11 2.64 5.26 -51.93 -0.27 2.37 16 34 H 0.04 0.79 7.80 -51.93 -0.40 0.38 16 35 H 0.14 2.53 8.06 -52.48 -0.42 2.11 16 36 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.14 2.12 7.12 -52.48 -0.37 1.74 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -25.10 328.08 -6.47 -31.57 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.28 Total: 0.42 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.45 Total: -6.06 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.20 Total: -35.38 kcal Atomic # 9 Polarization: -10.35 SS G_CDS: 0.15 Total: -10.20 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -25.10 -6.47 -31.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398260.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.513 kcal (2) G-P(sol) polarization free energy of solvation -25.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds