Wall clock time and date at job start Tue Mar 31 2020 08:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47411 * 2 1 4 4 N 1.46501 * 109.47222 * 180.02562 * 3 2 1 5 5 C 1.36941 * 120.00174 * 275.65756 * 4 3 2 6 6 H 1.07999 * 119.99673 * 34.01431 * 5 4 3 7 7 C 1.38807 * 120.00317 * 214.00901 * 5 4 3 8 8 N 1.31623 * 119.99720 * 22.90682 * 7 5 4 9 9 Si 1.86796 * 120.00373 * 202.90622 * 7 5 4 10 10 H 1.48499 * 109.46823 * 60.00031 * 9 7 5 11 11 H 1.48500 * 109.47538 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47054 * 300.00043 * 9 7 5 13 13 C 1.46499 * 119.99900 * 95.65917 * 4 3 2 14 14 C 1.50701 * 109.46997 * 269.99904 * 13 4 3 15 15 C 1.38268 * 119.97719 * 270.32167 * 14 13 4 16 16 C 1.38172 * 120.02655 * 180.27744 * 15 14 13 17 17 C 1.38475 * 119.97417 * 359.42477 * 16 15 14 18 18 F 1.35108 * 120.02886 * 180.25262 * 17 16 15 19 19 C 1.38443 * 119.95041 * 0.27651 * 17 16 15 20 20 C 1.50704 * 120.01514 * 180.02562 * 19 17 16 21 21 F 1.39896 * 109.46784 * 179.97438 * 20 19 17 22 22 F 1.39899 * 109.47055 * 299.99916 * 20 19 17 23 23 F 1.39901 * 109.46752 * 59.99850 * 20 19 17 24 24 C 1.38219 * 119.96889 * 359.97438 * 19 17 16 25 25 H 1.09001 * 109.47156 * 59.99322 * 1 2 3 26 26 H 1.08997 * 109.47434 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46722 * 299.99826 * 1 2 3 28 28 H 1.09005 * 109.46985 * 239.99854 * 2 1 3 29 29 H 1.09001 * 109.47156 * 120.00678 * 2 1 3 30 30 H 1.09005 * 109.46679 * 60.00560 * 3 2 1 31 31 H 1.09001 * 109.47514 * 300.00458 * 3 2 1 32 32 H 0.96999 * 120.00003 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46895 * 149.99936 * 13 4 3 34 34 H 1.08994 * 109.47042 * 29.99718 * 13 4 3 35 35 H 1.08006 * 119.98735 * 0.02562 * 15 14 13 36 36 H 1.08006 * 120.01345 * 179.69569 * 16 15 14 37 37 H 1.08007 * 119.98412 * 180.02562 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.3253 1.1792 6 1 3.7891 0.7202 1.9788 7 6 5.4004 1.9841 1.3474 8 7 5.6811 3.0417 0.6159 9 14 6.6304 1.3700 2.6119 10 1 7.0235 -0.0239 2.2837 11 1 7.8332 2.2407 2.5962 12 1 6.0122 1.4051 3.9617 13 6 4.2370 1.5676 -1.2635 14 6 4.4878 0.1967 -1.8368 15 6 5.6372 -0.4937 -1.4989 16 6 5.8710 -1.7483 -2.0284 17 6 4.9480 -2.3192 -2.8885 18 9 5.1731 -3.5481 -3.4029 19 6 3.7946 -1.6297 -3.2213 20 6 2.7889 -2.2499 -4.1567 21 9 1.7169 -1.3697 -4.3388 22 9 3.3963 -2.5073 -5.3903 23 9 2.3197 -3.4485 -3.6087 24 6 3.5654 -0.3726 -2.6944 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 6.5265 3.5024 0.7337 33 1 5.1895 2.0661 -1.0834 34 1 3.6476 2.1539 -1.9684 35 1 6.3545 -0.0504 -0.8239 36 1 6.7712 -2.2854 -1.7682 37 1 2.6654 0.1655 -2.9535 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398260.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:32 Heat of formation + Delta-G solvation = -171.116739 kcal Electronic energy + Delta-G solvation = -26132.924556 eV Core-core repulsion = 21795.660658 eV Total energy + Delta-G solvation = -4337.263898 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.30437 -50.10961 -48.73711 -48.72642 -40.43089 -37.75940 -34.71353 -33.41381 -32.87578 -31.60660 -27.46647 -27.37551 -26.98414 -24.04444 -23.63633 -22.31072 -21.76396 -19.61208 -19.57409 -19.42326 -18.65683 -18.18244 -17.39973 -16.81117 -16.71452 -16.00788 -15.73608 -15.62047 -15.58367 -15.51817 -15.18372 -15.15582 -14.88433 -14.86961 -14.79614 -14.39724 -14.18584 -13.74383 -13.50751 -13.29622 -13.09456 -12.87975 -12.66954 -12.51282 -12.26816 -12.14708 -12.00392 -11.86767 -11.74526 -11.32855 -10.50204 -10.34910 -9.64263 -8.60332 -7.83332 -5.39892 -0.21897 0.10018 1.47675 1.51991 1.52327 1.57288 2.33639 2.53972 2.55538 2.83195 3.05510 3.23744 3.29868 3.68604 3.81043 3.98475 4.15454 4.24087 4.27763 4.44136 4.53254 4.68265 4.78414 4.83436 4.89956 4.94866 5.00012 5.11342 5.21760 5.27505 5.45037 5.52296 5.64185 5.70998 5.72755 5.80163 6.46992 7.16329 7.85055 8.36355 9.13109 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.005645 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.448823 B = 4958.817630 C = 5984.488857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.589 5.589 5 C -0.259 4.259 6 H 0.052 0.948 7 C -0.025 4.025 8 N -0.909 5.909 9 Si 0.941 3.059 10 H -0.274 1.274 11 H -0.292 1.292 12 H -0.283 1.283 13 C 0.173 3.827 14 C -0.088 4.088 15 C -0.050 4.050 16 C -0.147 4.147 17 C 0.120 3.880 18 F -0.134 7.134 19 C -0.228 4.228 20 C 0.519 3.481 21 F -0.170 7.170 22 F -0.177 7.177 23 F -0.179 7.179 24 C -0.042 4.042 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.255 0.745 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.129 0.871 36 H 0.164 0.836 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 -8.280 -8.159 12.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.308 5.308 5 C -0.389 4.389 6 H 0.069 0.931 7 C -0.223 4.223 8 N -0.553 5.553 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.209 1.209 13 C 0.047 3.953 14 C -0.091 4.091 15 C -0.069 4.069 16 C -0.165 4.165 17 C 0.100 3.900 18 F -0.113 7.113 19 C -0.231 4.231 20 C 0.464 3.536 21 F -0.152 7.152 22 F -0.158 7.158 23 F -0.160 7.160 24 C -0.061 4.061 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.147 0.853 36 H 0.182 0.818 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.901 -8.179 -8.172 12.203 hybrid contribution 0.662 -0.523 0.602 1.036 sum -3.239 -8.702 -7.571 11.980 Atomic orbital electron populations 1.21668 0.94632 1.01624 1.01975 1.22008 0.96106 0.98879 1.00501 1.21050 0.83367 0.94483 0.99134 1.43955 1.00651 1.84424 1.01809 1.19093 1.03456 1.22668 0.93721 0.93079 1.25540 1.01750 0.95086 0.99908 1.70055 1.24008 1.17496 1.43715 0.85756 0.79146 0.78230 0.79882 1.20024 1.21800 1.20910 1.20011 1.00266 0.89307 0.85757 1.21183 0.93117 1.00538 0.94260 1.21231 0.96868 0.93078 0.95697 1.21296 1.00482 0.96619 0.98131 1.17255 0.94737 0.80932 0.97070 1.91516 1.94643 1.39831 1.85292 1.20023 0.97043 0.99257 1.06735 1.17980 0.80227 0.76072 0.79282 1.93171 1.57809 1.68657 1.95519 1.93208 1.83109 1.94230 1.45261 1.93210 1.89501 1.47724 1.85560 1.20832 0.99278 0.91822 0.94162 0.92024 0.92545 0.92748 0.93039 0.94501 0.94798 0.93080 0.93587 0.89416 0.93445 0.85316 0.81830 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.00 16 2 C -0.14 -4.53 6.22 30.59 0.19 -4.34 16 3 C 0.14 5.53 5.72 86.38 0.49 6.02 16 4 N -0.59 -26.27 2.44 -706.35 -1.73 -28.00 16 5 C -0.26 -12.93 9.48 84.03 0.80 -12.14 16 6 H 0.05 2.62 7.93 -2.91 -0.02 2.60 16 7 C -0.02 -1.25 4.95 84.86 0.42 -0.83 16 8 N -0.91 -47.96 11.31 21.65 0.24 -47.72 16 9 Si 0.94 40.90 29.61 68.60 2.03 42.93 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 C 0.17 7.12 5.46 85.63 0.47 7.59 16 14 C -0.09 -3.11 5.44 -19.86 -0.11 -3.22 16 15 C -0.05 -1.69 9.70 22.26 0.22 -1.48 16 16 C -0.15 -4.28 10.03 22.31 0.22 -4.06 16 17 C 0.12 3.61 7.13 22.38 0.16 3.77 16 18 F -0.13 -3.97 16.47 44.97 0.74 -3.23 16 19 C -0.23 -6.89 5.38 -19.82 -0.11 -7.00 16 20 C 0.52 14.70 3.03 71.24 0.22 14.92 16 21 F -0.17 -4.59 15.97 44.97 0.72 -3.87 16 22 F -0.18 -4.98 17.05 44.97 0.77 -4.22 16 23 F -0.18 -5.21 17.06 44.97 0.77 -4.44 16 24 C -0.04 -1.32 7.25 22.26 0.16 -1.16 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.73 6.13 -2.38 -0.01 1.72 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.03 1.36 8.09 -2.38 -0.02 1.34 16 31 H 0.05 1.78 7.83 -2.39 -0.02 1.76 16 32 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 33 H 0.09 4.16 5.26 -2.38 -0.01 4.15 16 34 H 0.05 1.83 7.80 -2.39 -0.02 1.81 16 35 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 37 H 0.15 4.27 7.12 -2.91 -0.02 4.25 16 Total: -1.00 -52.53 328.08 8.48 -44.05 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 1.10 Total: 9.43 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 3.84 Total: -4.93 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -1.48 Total: -75.71 kcal Atomic # 9 Polarization: -18.75 SS G_CDS: 2.99 Total: -15.76 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -52.53 8.48 -44.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398260.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.071 kcal (2) G-P(sol) polarization free energy of solvation -52.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds