Wall clock time and date at job start Tue Mar 31 2020 08:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33018 * 119.99939 * 2 1 4 4 C 1.47065 * 119.99958 * 172.83066 * 3 2 1 5 5 O 1.21636 * 119.99942 * 358.44359 * 4 3 2 6 6 N 1.34772 * 120.00106 * 178.45192 * 4 3 2 7 7 C 1.39994 * 120.00190 * 175.90496 * 6 4 3 8 8 C 1.38740 * 120.07501 * 32.68385 * 7 6 4 9 9 C 1.38180 * 120.01186 * 179.72545 * 8 7 6 10 10 C 1.38560 * 120.18255 * 0.55334 * 9 8 7 11 11 F 1.35096 * 119.92222 * 179.74615 * 10 9 8 12 12 C 1.38346 * 120.15596 * 359.72369 * 10 9 8 13 13 C 1.38735 * 119.98106 * 0.02562 * 12 10 9 14 14 O 1.35767 * 120.08754 * 179.97438 * 13 12 10 15 15 C 1.34803 * 117.00508 * 5.44514 * 14 13 12 16 16 H 1.08001 * 119.99624 * 5.35718 * 15 14 13 17 17 C 1.38635 * 120.00393 * 185.35119 * 15 14 13 18 18 N 1.31570 * 119.99978 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00321 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46615 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47166 * 119.99742 * 19 17 15 22 22 H 1.48496 * 109.47157 * 239.99981 * 19 17 15 23 23 C 1.50697 * 119.99731 * 179.97438 * 2 1 3 24 24 C 1.52996 * 117.50243 * 0.31903 * 23 2 1 25 25 C 1.53003 * 117.49972 * 291.69227 * 23 2 1 26 26 H 1.09000 * 109.47263 * 90.00186 * 1 2 3 27 27 H 1.08997 * 109.47034 * 210.01002 * 1 2 3 28 28 H 1.09006 * 109.46758 * 330.00042 * 1 2 3 29 29 H 1.07998 * 119.99826 * 352.81658 * 3 2 1 30 30 H 0.97001 * 119.99692 * 355.61774 * 6 4 3 31 31 H 1.07999 * 119.99337 * 0.02562 * 8 7 6 32 32 H 1.07999 * 119.91318 * 180.27856 * 9 8 7 33 33 H 1.07999 * 120.00721 * 180.02562 * 12 10 9 34 34 H 0.97000 * 120.00343 * 179.97438 * 18 17 15 35 35 H 1.09000 * 115.54720 * 146.03186 * 23 2 1 36 36 H 1.09005 * 117.49921 * 359.97438 * 24 23 2 37 37 H 1.09001 * 117.50417 * 145.02222 * 24 23 2 38 38 H 1.08993 * 117.50359 * 214.98082 * 25 23 2 39 39 H 1.08997 * 117.49832 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1520 0.0000 4 6 3.6342 1.1570 0.1590 5 8 4.2321 0.1098 0.3188 6 7 4.3114 2.3217 0.1277 7 6 5.6912 2.3357 0.3643 8 6 6.4746 1.2594 -0.0264 9 6 7.8371 1.2771 0.2026 10 6 8.4236 2.3629 0.8327 11 9 9.7555 2.3725 1.0586 12 6 7.6485 3.4376 1.2305 13 6 6.2806 3.4291 0.9991 14 8 5.5178 4.4823 1.3891 15 6 6.1639 5.5527 1.8931 16 1 7.2435 5.5815 1.8920 17 6 5.4426 6.6166 2.4127 18 7 4.1274 6.5813 2.4143 19 14 6.3380 8.1001 3.1104 20 1 7.8039 7.8943 2.9919 21 1 5.9456 9.3161 2.3538 22 1 5.9764 8.2689 4.5407 23 6 2.2605 -1.3051 0.0006 24 6 1.4384 -2.5955 -0.0064 25 6 2.1792 -2.1672 1.2620 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5140 28 1 -0.3633 0.8901 0.5139 29 1 1.6385 2.0836 -0.1170 30 1 3.8436 3.1498 -0.0629 31 1 6.0201 0.4097 -0.5141 32 1 8.4461 0.4404 -0.1062 33 1 8.1081 4.2829 1.7210 34 1 3.6227 7.3255 2.7782 35 1 3.2018 -1.3047 -0.5489 36 1 0.3525 -2.5004 -0.0110 37 1 1.8388 -3.4444 -0.5607 38 1 3.0669 -2.7343 1.5421 39 1 1.5805 -1.7905 2.0913 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120115512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:45 Heat of formation + Delta-G solvation = -36.573687 kcal Electronic energy + Delta-G solvation = -24255.373441 eV Core-core repulsion = 20465.800508 eV Total energy + Delta-G solvation = -3789.572933 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.24891 -40.17634 -38.88192 -37.61675 -36.23930 -33.99486 -33.35952 -32.41350 -29.53635 -28.89483 -27.48030 -25.50750 -23.71815 -22.39971 -22.22962 -21.64144 -20.33171 -18.69465 -18.34837 -17.60120 -16.92041 -16.62371 -15.53114 -15.32202 -15.24988 -14.98858 -14.58370 -14.41493 -14.25629 -13.66739 -13.59514 -13.45391 -13.25641 -13.10286 -12.93040 -12.34285 -12.31692 -12.16171 -11.67951 -11.55893 -11.37814 -11.27647 -10.97650 -10.72745 -10.70374 -10.51442 -10.34787 -9.79979 -9.54703 -9.09690 -8.96364 -8.84953 -7.87513 -7.08707 -6.60822 -4.18752 1.34000 1.94269 2.12845 3.05304 3.07777 3.13111 3.48038 3.65287 3.85090 3.99299 4.36508 4.56617 4.80312 4.85090 4.96784 5.01451 5.09002 5.11802 5.13654 5.40768 5.42509 5.52592 5.59218 5.63013 5.74713 5.77618 5.90199 6.04105 6.11943 6.22888 6.28274 6.40326 6.57546 6.59651 6.79161 6.92167 6.95473 7.07888 7.20695 7.65780 7.82685 7.99195 8.62495 8.85110 9.46547 10.56215 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013081 B = 0.004206 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.060719 B = 6654.987799 C = 8516.093237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.011 4.011 3 C -0.215 4.215 4 C 0.542 3.458 5 O -0.535 6.535 6 N -0.645 5.645 7 C 0.061 3.939 8 C -0.052 4.052 9 C -0.230 4.230 10 C 0.128 3.872 11 F -0.152 7.152 12 C -0.259 4.259 13 C 0.157 3.843 14 O -0.168 6.168 15 C -0.393 4.393 16 H 0.095 0.905 17 C 0.043 3.957 18 N -0.858 5.858 19 Si 0.942 3.058 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.115 4.115 24 C -0.193 4.193 25 C -0.156 4.156 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.130 0.870 30 H 0.414 0.586 31 H 0.144 0.856 32 H 0.122 0.878 33 H 0.143 0.857 34 H 0.271 0.729 35 H 0.137 0.863 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.627 -10.542 -5.126 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.013 4.013 3 C -0.236 4.236 4 C 0.333 3.667 5 O -0.415 6.415 6 N -0.287 5.287 7 C -0.034 4.034 8 C -0.072 4.072 9 C -0.250 4.250 10 C 0.109 3.891 11 F -0.131 7.131 12 C -0.280 4.280 13 C 0.101 3.899 14 O -0.071 6.071 15 C -0.469 4.469 16 H 0.112 0.888 17 C -0.162 4.162 18 N -0.492 5.492 19 Si 0.767 3.233 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.133 4.133 24 C -0.230 4.230 25 C -0.193 4.193 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.148 0.852 30 H 0.251 0.749 31 H 0.162 0.838 32 H 0.140 0.860 33 H 0.160 0.840 34 H 0.081 0.919 35 H 0.154 0.846 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.654 -11.041 -4.911 13.341 hybrid contribution 0.544 1.391 0.492 1.573 sum -5.110 -9.650 -4.419 11.780 Atomic orbital electron populations 1.20999 0.91258 1.03257 1.02847 1.21757 0.95090 0.93281 0.91190 1.22360 0.93293 0.98848 1.09124 1.18543 0.87815 0.83393 0.76968 1.90673 1.70126 1.30973 1.49713 1.43059 1.06663 1.10532 1.68491 1.16898 0.83052 0.96456 1.06999 1.20712 0.91640 0.97319 0.97564 1.20493 0.95321 0.99348 1.09849 1.17471 0.76543 0.95643 0.99476 1.91408 1.31814 1.96892 1.92946 1.20855 0.93681 1.01252 1.12191 1.18831 0.89648 0.88631 0.92768 1.83938 1.33455 1.21090 1.68574 1.21400 0.92332 0.92850 1.40274 0.88795 1.25288 0.95761 0.98731 0.96417 1.70024 1.05198 1.31946 1.42065 0.85620 0.79275 0.79734 0.78721 1.18942 1.20005 1.20030 1.21499 1.00593 0.87795 1.03373 1.23130 0.98799 0.98689 1.02335 1.22787 1.02471 1.02670 0.91380 0.90426 0.90942 0.90864 0.85207 0.74934 0.83838 0.86004 0.83996 0.91868 0.84599 0.88813 0.88832 0.88565 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.52 36.01 0.34 -0.78 16 2 C -0.01 -0.14 5.81 -101.16 -0.59 -0.72 16 3 C -0.22 -2.99 9.62 -37.82 -0.36 -3.35 16 4 C 0.54 9.38 7.56 -12.68 -0.10 9.28 16 5 O -0.53 -10.00 10.52 5.25 0.06 -9.95 16 6 N -0.64 -12.05 5.20 -10.79 -0.06 -12.10 16 7 C 0.06 1.27 6.36 -83.48 -0.53 0.74 16 8 C -0.05 -1.00 8.71 -39.42 -0.34 -1.35 16 9 C -0.23 -4.31 10.02 -39.48 -0.40 -4.70 16 10 C 0.13 2.60 7.29 -39.42 -0.29 2.31 16 11 F -0.15 -2.94 17.26 2.25 0.04 -2.90 16 12 C -0.26 -5.72 9.11 -39.36 -0.36 -6.08 16 13 C 0.16 3.66 6.66 -38.93 -0.26 3.40 16 14 O -0.17 -4.41 9.29 0.07 0.00 -4.41 16 15 C -0.39 -10.39 9.44 30.88 0.29 -10.10 16 16 H 0.09 2.35 5.29 -52.49 -0.28 2.07 16 17 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 18 N -0.86 -23.51 13.67 55.48 0.76 -22.75 16 19 Si 0.94 19.72 29.55 -169.99 -5.02 14.70 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 C -0.11 -1.46 4.35 -91.77 -0.40 -1.85 16 24 C -0.19 -1.91 9.80 -26.73 -0.26 -2.17 16 25 C -0.16 -1.84 10.24 -26.73 -0.27 -2.11 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.57 6.31 -51.93 -0.33 0.24 16 28 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.41 7.42 8.52 -40.82 -0.35 7.07 16 31 H 0.14 2.64 6.05 -52.49 -0.32 2.33 16 32 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.14 3.14 5.70 -52.49 -0.30 2.84 16 34 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.14 2.00 6.19 -51.93 -0.32 1.68 16 36 H 0.09 0.79 6.27 -51.93 -0.33 0.46 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -29.23 336.21 -7.09 -36.32 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -4.31 Total: 12.50 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -3.62 Total: -16.47 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.70 Total: -34.86 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.06 Total: -14.36 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.23 -7.09 -36.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120115512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.254 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds