Wall clock time and date at job start Tue Mar 31 2020 08:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33018 * 119.99939 * 2 1 4 4 C 1.47065 * 119.99958 * 172.83066 * 3 2 1 5 5 O 1.21636 * 119.99942 * 358.44359 * 4 3 2 6 6 N 1.34772 * 120.00106 * 178.45192 * 4 3 2 7 7 C 1.39994 * 120.00190 * 175.90496 * 6 4 3 8 8 C 1.38740 * 120.07501 * 32.68385 * 7 6 4 9 9 C 1.38180 * 120.01186 * 179.72545 * 8 7 6 10 10 C 1.38560 * 120.18255 * 0.55334 * 9 8 7 11 11 F 1.35096 * 119.92222 * 179.74615 * 10 9 8 12 12 C 1.38346 * 120.15596 * 359.72369 * 10 9 8 13 13 C 1.38735 * 119.98106 * 0.02562 * 12 10 9 14 14 O 1.35767 * 120.08754 * 179.97438 * 13 12 10 15 15 C 1.34803 * 117.00508 * 5.44514 * 14 13 12 16 16 H 1.08001 * 119.99624 * 5.35718 * 15 14 13 17 17 C 1.38635 * 120.00393 * 185.35119 * 15 14 13 18 18 N 1.31570 * 119.99978 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00321 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46615 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47166 * 119.99742 * 19 17 15 22 22 H 1.48496 * 109.47157 * 239.99981 * 19 17 15 23 23 C 1.50697 * 119.99731 * 179.97438 * 2 1 3 24 24 C 1.52996 * 117.50243 * 0.31903 * 23 2 1 25 25 C 1.53003 * 117.49972 * 291.69227 * 23 2 1 26 26 H 1.09000 * 109.47263 * 90.00186 * 1 2 3 27 27 H 1.08997 * 109.47034 * 210.01002 * 1 2 3 28 28 H 1.09006 * 109.46758 * 330.00042 * 1 2 3 29 29 H 1.07998 * 119.99826 * 352.81658 * 3 2 1 30 30 H 0.97001 * 119.99692 * 355.61774 * 6 4 3 31 31 H 1.07999 * 119.99337 * 0.02562 * 8 7 6 32 32 H 1.07999 * 119.91318 * 180.27856 * 9 8 7 33 33 H 1.07999 * 120.00721 * 180.02562 * 12 10 9 34 34 H 0.97000 * 120.00343 * 179.97438 * 18 17 15 35 35 H 1.09000 * 115.54720 * 146.03186 * 23 2 1 36 36 H 1.09005 * 117.49921 * 359.97438 * 24 23 2 37 37 H 1.09001 * 117.50417 * 145.02222 * 24 23 2 38 38 H 1.08993 * 117.50359 * 214.98082 * 25 23 2 39 39 H 1.08997 * 117.49832 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1520 0.0000 4 6 3.6342 1.1570 0.1590 5 8 4.2321 0.1098 0.3188 6 7 4.3114 2.3217 0.1277 7 6 5.6912 2.3357 0.3643 8 6 6.4746 1.2594 -0.0264 9 6 7.8371 1.2771 0.2026 10 6 8.4236 2.3629 0.8327 11 9 9.7555 2.3725 1.0586 12 6 7.6485 3.4376 1.2305 13 6 6.2806 3.4291 0.9991 14 8 5.5178 4.4823 1.3891 15 6 6.1639 5.5527 1.8931 16 1 7.2435 5.5815 1.8920 17 6 5.4426 6.6166 2.4127 18 7 4.1274 6.5813 2.4143 19 14 6.3380 8.1001 3.1104 20 1 7.8039 7.8943 2.9919 21 1 5.9456 9.3161 2.3538 22 1 5.9764 8.2689 4.5407 23 6 2.2605 -1.3051 0.0006 24 6 1.4384 -2.5955 -0.0064 25 6 2.1792 -2.1672 1.2620 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5140 28 1 -0.3633 0.8901 0.5139 29 1 1.6385 2.0836 -0.1170 30 1 3.8436 3.1498 -0.0629 31 1 6.0201 0.4097 -0.5141 32 1 8.4461 0.4404 -0.1062 33 1 8.1081 4.2829 1.7210 34 1 3.6227 7.3255 2.7782 35 1 3.2018 -1.3047 -0.5489 36 1 0.3525 -2.5004 -0.0110 37 1 1.8388 -3.4444 -0.5607 38 1 3.0669 -2.7343 1.5421 39 1 1.5805 -1.7905 2.0913 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120115512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:45 Heat of formation + Delta-G solvation = -52.416872 kcal Electronic energy + Delta-G solvation = -24256.060453 eV Core-core repulsion = 20465.800508 eV Total energy + Delta-G solvation = -3790.259945 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.85171 -41.66869 -40.40077 -38.79631 -37.86045 -35.49553 -34.33147 -34.32370 -31.17602 -30.35244 -28.61995 -27.39221 -24.90946 -23.87361 -23.26529 -23.05416 -21.71479 -20.16900 -19.97729 -19.17299 -18.25103 -18.05955 -17.06104 -16.91071 -16.60614 -16.50930 -15.99709 -15.81709 -15.75794 -15.33797 -15.29229 -14.93081 -14.35942 -14.13177 -14.02039 -13.92003 -13.71071 -13.44178 -13.13866 -13.04207 -12.59646 -12.49514 -12.29943 -12.16090 -12.12705 -11.71224 -11.61998 -11.32544 -11.05895 -10.85141 -10.39397 -9.88937 -9.56069 -8.74675 -8.52484 -6.18945 0.04962 0.42733 0.50605 1.36354 1.42349 1.52778 2.11132 2.15972 2.27798 2.68683 3.02024 3.08477 3.17006 3.43390 3.62584 3.78534 3.94385 4.06871 4.13542 4.19057 4.28041 4.34990 4.44086 4.62865 4.66257 4.75833 4.83444 4.93226 4.98439 5.01033 5.10076 5.20711 5.26641 5.29069 5.30651 5.33805 5.45421 5.59010 5.64947 5.91804 6.03829 6.55534 6.91892 7.21227 7.61044 8.68422 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013081 B = 0.004206 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.060719 B = 6654.987799 C = 8516.093237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.013 3.987 3 C -0.246 4.246 4 C 0.538 3.462 5 O -0.553 6.553 6 N -0.651 5.651 7 C 0.062 3.938 8 C -0.053 4.053 9 C -0.204 4.204 10 C 0.121 3.879 11 F -0.145 7.145 12 C -0.265 4.265 13 C 0.129 3.871 14 O -0.202 6.202 15 C -0.417 4.417 16 H 0.099 0.901 17 C -0.009 4.009 18 N -0.905 5.905 19 Si 1.013 2.987 20 H -0.257 1.257 21 H -0.266 1.266 22 H -0.269 1.269 23 C -0.143 4.143 24 C -0.161 4.161 25 C -0.166 4.166 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.415 0.585 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.135 0.865 34 H 0.275 0.725 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 -12.115 -5.628 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.011 3.989 3 C -0.267 4.267 4 C 0.332 3.668 5 O -0.434 6.434 6 N -0.294 5.294 7 C -0.033 4.033 8 C -0.074 4.074 9 C -0.224 4.224 10 C 0.102 3.898 11 F -0.123 7.123 12 C -0.286 4.286 13 C 0.076 3.924 14 O -0.108 6.108 15 C -0.493 4.493 16 H 0.116 0.884 17 C -0.208 4.208 18 N -0.542 5.542 19 Si 0.833 3.167 20 H -0.180 1.180 21 H -0.190 1.190 22 H -0.194 1.194 23 C -0.161 4.161 24 C -0.197 4.197 25 C -0.203 4.203 26 H 0.117 0.883 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.162 0.838 30 H 0.251 0.749 31 H 0.174 0.826 32 H 0.175 0.825 33 H 0.153 0.847 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.225 -12.657 -5.435 15.116 hybrid contribution 0.759 1.549 0.540 1.808 sum -5.466 -11.107 -4.895 13.312 Atomic orbital electron populations 1.21116 0.88281 1.04409 1.04486 1.22177 0.97016 0.92349 0.87338 1.22325 0.91201 1.00443 1.12747 1.19154 0.89212 0.82493 0.75960 1.90652 1.70886 1.31285 1.50590 1.43206 1.05980 1.11257 1.69002 1.17208 0.84455 0.95988 1.05700 1.20928 0.91894 0.97069 0.97467 1.20895 0.95251 0.99310 1.06968 1.17463 0.76805 0.95597 0.99978 1.91425 1.31132 1.96851 1.92926 1.20928 0.93637 1.01806 1.12219 1.19203 0.90290 0.89130 0.93812 1.83916 1.34299 1.21965 1.70584 1.21788 0.92829 0.93688 1.40961 0.88412 1.26403 0.96575 1.01425 0.96435 1.70133 1.06800 1.33280 1.43944 0.84602 0.78308 0.75848 0.77982 1.18043 1.19042 1.19445 1.21462 1.00905 0.89421 1.04335 1.23236 0.99739 0.96846 0.99922 1.22833 1.02949 1.02703 0.91861 0.88269 0.89298 0.90224 0.83763 0.74888 0.82620 0.82458 0.84726 0.91566 0.87060 0.86449 0.87720 0.89311 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.52 71.24 0.68 -1.16 16 2 C 0.01 0.30 5.81 -17.61 -0.10 0.20 16 3 C -0.25 -6.76 9.62 23.42 0.23 -6.54 16 4 C 0.54 18.93 7.56 86.56 0.65 19.59 16 5 O -0.55 -20.83 10.52 -4.15 -0.04 -20.87 16 6 N -0.65 -25.17 5.20 -306.31 -1.59 -26.76 16 7 C 0.06 2.64 6.36 38.26 0.24 2.88 16 8 C -0.05 -2.02 8.71 22.38 0.19 -1.82 16 9 C -0.20 -7.26 10.02 22.33 0.22 -7.04 16 10 C 0.12 4.80 7.29 22.37 0.16 4.97 16 11 F -0.14 -5.39 17.26 44.97 0.78 -4.61 16 12 C -0.27 -11.95 9.11 22.41 0.20 -11.74 16 13 C 0.13 6.24 6.66 22.69 0.15 6.39 16 14 O -0.20 -11.19 9.29 -22.65 -0.21 -11.40 16 15 C -0.42 -22.98 9.44 67.91 0.64 -22.34 16 16 H 0.10 5.08 5.29 -2.91 -0.02 5.07 16 17 C -0.01 -0.46 5.49 84.83 0.47 0.00 16 18 N -0.90 -51.43 13.67 21.61 0.30 -51.13 16 19 Si 1.01 41.08 29.55 68.60 2.03 43.11 16 20 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 21 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 22 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 23 C -0.14 -3.43 4.35 -11.54 -0.05 -3.48 16 24 C -0.16 -2.69 9.80 30.60 0.30 -2.39 16 25 C -0.17 -3.66 10.24 30.60 0.31 -3.35 16 26 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 1.03 6.31 -2.39 -0.02 1.02 16 28 H 0.08 1.11 8.07 -2.38 -0.02 1.09 16 29 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 30 H 0.41 15.70 8.52 -92.71 -0.79 14.91 16 31 H 0.16 5.57 6.05 -2.91 -0.02 5.56 16 32 H 0.16 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.14 6.16 5.70 -2.91 -0.02 6.15 16 34 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 35 H 0.11 3.26 6.19 -2.39 -0.01 3.25 16 36 H 0.12 1.44 6.27 -2.38 -0.01 1.42 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -65.51 336.21 5.88 -59.62 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: 0.32 Total: 37.89 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 4.31 Total: -25.85 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -1.30 Total: -77.89 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.25 Total: -32.28 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.78 Total: -4.61 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -65.51 5.88 -59.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120115512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.208 kcal (2) G-P(sol) polarization free energy of solvation -65.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds