Wall clock time and date at job start Tue Mar 31 2020 08:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47226 * 21.96211 * 3 2 1 5 5 C 1.53004 * 109.46986 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46882 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47055 * 179.97438 * 6 5 4 8 8 O 1.21299 * 120.00117 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00342 * 180.02562 * 7 6 5 10 10 C 1.40081 * 120.00082 * 185.61293 * 9 7 6 11 11 C 1.38709 * 120.07990 * 34.06418 * 10 9 7 12 12 C 1.38189 * 120.01964 * 179.97438 * 11 10 9 13 13 C 1.38548 * 120.17976 * 0.03230 * 12 11 10 14 14 F 1.35098 * 119.92433 * 179.97438 * 13 12 11 15 15 C 1.38341 * 120.15132 * 359.97438 * 13 12 11 16 16 C 1.38741 * 119.98167 * 359.97438 * 15 13 12 17 17 O 1.35771 * 120.09067 * 180.29367 * 16 15 13 18 18 C 1.34813 * 116.99927 * 354.19117 * 17 16 15 19 19 H 1.07997 * 119.99919 * 354.51625 * 18 17 16 20 20 C 1.38632 * 120.00026 * 174.52021 * 18 17 16 21 21 N 1.31574 * 120.00036 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00077 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47381 * 59.99581 * 22 20 18 24 24 H 1.48500 * 109.47268 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46949 * 299.99652 * 22 20 18 26 26 H 4.44650 * 5.63361 * 179.97438 * 4 1 2 27 27 H 1.08996 * 109.47364 * 261.95469 * 3 2 1 28 28 H 1.09006 * 109.46726 * 141.96151 * 3 2 1 29 29 H 1.09000 * 109.47187 * 59.99728 * 4 3 2 30 30 H 1.08996 * 109.47091 * 299.99724 * 4 3 2 31 31 H 1.09000 * 109.47244 * 59.99929 * 5 4 3 32 32 H 1.08998 * 109.47366 * 299.99404 * 5 4 3 33 33 H 1.09000 * 109.46983 * 60.00082 * 6 5 4 34 34 H 1.08996 * 109.47398 * 300.00014 * 6 5 4 35 35 H 0.97000 * 119.99438 * 5.60852 * 9 7 6 36 36 H 1.08000 * 119.98996 * 359.97438 * 11 10 9 37 37 H 1.07999 * 119.90633 * 180.02562 * 12 11 10 38 38 H 1.08009 * 120.00670 * 180.02562 * 15 13 12 39 39 H 0.96995 * 119.99921 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3369 -0.5395 5 6 4.6867 -1.3359 -0.5400 6 6 5.1973 -2.6738 -1.0789 7 6 6.7043 -2.6726 -1.0801 8 8 7.3103 -1.6978 -0.6880 9 7 7.3787 -3.7547 -1.5168 10 6 8.7746 -3.8006 -1.4089 11 6 9.4087 -3.2010 -0.3308 12 6 10.7857 -3.2475 -0.2253 13 6 11.5372 -3.8916 -1.1948 14 9 12.8832 -3.9335 -1.0868 15 6 10.9124 -4.4919 -2.2732 16 6 9.5301 -4.4501 -2.3850 17 8 8.9142 -5.0437 -3.4394 18 6 9.7067 -5.5521 -4.4042 19 1 10.7750 -5.3994 -4.3617 20 6 9.1503 -6.2708 -5.4510 21 7 7.8489 -6.4572 -5.5026 22 14 10.2483 -6.9746 -6.7883 23 1 11.2226 -7.9180 -6.1833 24 1 9.4153 -7.6942 -7.7850 25 1 10.9799 -5.8707 -7.4600 26 1 -1.0498 -0.0005 0.0000 27 1 3.0093 0.1446 1.0175 28 1 3.0089 0.8103 -0.6333 29 1 2.7933 -1.4808 -1.5570 30 1 2.7937 -2.1464 0.0938 31 1 5.0503 -1.1918 0.4773 32 1 5.0493 -0.5265 -1.1736 33 1 4.8336 -2.8183 -2.0963 34 1 4.8347 -3.4830 -0.4451 35 1 6.8975 -4.5017 -1.9058 36 1 8.8259 -2.6976 0.4265 37 1 11.2775 -2.7803 0.6152 38 1 11.5004 -4.9938 -3.0275 39 1 7.4596 -6.9597 -6.2352 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120276634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:13 Heat of formation + Delta-G solvation = -49.150429 kcal Electronic energy + Delta-G solvation = -23453.152580 eV Core-core repulsion = 19663.034278 eV Total energy + Delta-G solvation = -3790.118302 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.27719 -40.12435 -38.67552 -36.57061 -36.07569 -34.06183 -33.27161 -32.43849 -30.27489 -29.41446 -28.24977 -25.58804 -25.14489 -22.57084 -21.79340 -21.12715 -19.88629 -18.37409 -18.27149 -17.82245 -16.77581 -16.61022 -16.12418 -15.38978 -15.26494 -14.97064 -14.69000 -14.45728 -14.31082 -14.15835 -13.71661 -13.55957 -13.36604 -13.15583 -12.85918 -12.36755 -12.21690 -11.86580 -11.77304 -11.64350 -11.37257 -11.34451 -10.98133 -10.77630 -10.73690 -10.57914 -10.37684 -10.27795 -9.85084 -9.71485 -9.36012 -8.98270 -7.92174 -7.13936 -6.63121 -4.20844 1.77046 2.08834 2.60831 2.64574 2.96457 3.06131 3.06566 3.09104 3.50391 3.83139 4.16408 4.30622 4.77486 4.82185 4.83129 4.87695 4.93109 5.08496 5.20299 5.23178 5.39948 5.52381 5.59233 5.65686 5.69030 5.72998 5.84102 5.85989 5.99783 6.13915 6.21411 6.27078 6.48694 6.73074 6.88578 6.89656 7.03176 7.16261 7.41947 7.60497 7.80090 7.90933 8.54372 8.82786 9.43424 10.53866 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.003255 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.016913 B = 8600.390923 C =10720.311944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.181 4.181 3 C -0.016 4.016 4 C -0.115 4.115 5 C -0.103 4.103 6 C -0.140 4.140 7 C 0.508 3.492 8 O -0.538 6.538 9 N -0.652 5.652 10 C 0.061 3.939 11 C -0.049 4.049 12 C -0.229 4.229 13 C 0.130 3.870 14 F -0.151 7.151 15 C -0.258 4.258 16 C 0.158 3.842 17 O -0.167 6.167 18 C -0.393 4.393 19 H 0.094 0.906 20 C 0.044 3.956 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.269 1.269 26 H 0.215 0.785 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.415 0.585 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.143 0.857 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.043 6.119 8.401 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.181 4.181 3 C -0.052 4.052 4 C -0.153 4.153 5 C -0.141 4.141 6 C -0.180 4.180 7 C 0.296 3.704 8 O -0.415 6.415 9 N -0.296 5.296 10 C -0.034 4.034 11 C -0.070 4.070 12 C -0.249 4.249 13 C 0.110 3.890 14 F -0.130 7.130 15 C -0.279 4.279 16 C 0.102 3.898 17 O -0.070 6.070 18 C -0.468 4.468 19 H 0.111 0.889 20 C -0.162 4.162 21 N -0.493 5.493 22 Si 0.766 3.234 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.194 1.194 26 H 0.232 0.768 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.251 0.749 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.030 6.639 8.455 13.418 hybrid contribution 0.441 -0.826 -0.973 1.350 sum -7.589 5.812 7.482 12.140 Atomic orbital electron populations 1.24892 0.95989 1.01195 1.01616 1.23272 0.94702 1.00159 1.00007 1.18788 0.84397 0.99186 1.02845 1.21570 0.95517 0.96288 1.01898 1.21336 0.93670 0.96480 1.02618 1.21654 0.91704 1.00366 1.04240 1.20752 0.90232 0.82058 0.77356 1.90674 1.70339 1.33234 1.47290 1.43248 1.05215 1.20083 1.61098 1.16859 0.82475 1.07744 0.96282 1.20450 0.93390 0.97664 0.95475 1.20449 0.93755 1.09051 1.01634 1.17446 0.76102 0.99363 0.96088 1.91412 1.30483 1.94934 1.96159 1.20874 0.94726 1.10593 1.01725 1.18840 0.89986 0.93539 0.87481 1.83930 1.34626 1.62958 1.25489 1.21296 0.91310 1.34040 1.00193 0.88896 1.25282 0.96611 0.96120 0.98139 1.69996 1.09989 1.37487 1.31830 0.85748 0.79007 0.79257 0.79341 1.19326 1.20155 1.19351 0.76802 0.89427 0.89375 0.91350 0.91455 0.90932 0.90824 0.88542 0.88746 0.74864 0.84748 0.85923 0.83959 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.96 19.25 29.55 0.57 -1.39 16 2 C -0.18 -1.80 13.34 -37.12 -0.50 -2.29 16 3 C -0.02 -0.13 5.70 -29.52 -0.17 -0.30 16 4 C -0.12 -0.99 5.17 -26.73 -0.14 -1.13 16 5 C -0.10 -1.05 4.50 -26.73 -0.12 -1.17 16 6 C -0.14 -1.57 5.70 -27.88 -0.16 -1.73 16 7 C 0.51 8.15 7.56 -10.98 -0.08 8.07 16 8 O -0.54 -10.09 13.74 5.54 0.08 -10.02 16 9 N -0.65 -11.58 5.20 -9.72 -0.05 -11.63 16 10 C 0.06 1.24 6.28 -83.45 -0.52 0.71 16 11 C -0.05 -0.93 8.65 -39.43 -0.34 -1.27 16 12 C -0.23 -4.21 10.02 -39.49 -0.40 -4.60 16 13 C 0.13 2.58 7.29 -39.43 -0.29 2.29 16 14 F -0.15 -2.88 17.26 2.25 0.04 -2.84 16 15 C -0.26 -5.61 9.11 -39.36 -0.36 -5.97 16 16 C 0.16 3.61 6.66 -38.93 -0.26 3.35 16 17 O -0.17 -4.33 9.30 0.03 0.00 -4.33 16 18 C -0.39 -10.29 9.44 30.88 0.29 -10.00 16 19 H 0.09 2.29 5.30 -52.49 -0.28 2.01 16 20 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 21 N -0.86 -23.22 13.67 55.48 0.76 -22.46 16 22 Si 0.94 19.55 29.55 -169.99 -5.02 14.53 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 26 H 0.22 1.19 7.80 -54.10 -0.42 0.77 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.42 7.00 8.55 -40.82 -0.35 6.65 16 36 H 0.13 2.40 6.48 -52.49 -0.34 2.06 16 37 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 38 H 0.14 3.09 5.71 -52.48 -0.30 2.79 16 39 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -30.19 349.49 -6.12 -36.32 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -4.62 Total: 9.58 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -2.57 Total: -14.41 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.71 Total: -34.09 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.08 Total: -14.34 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.19 -6.12 -36.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120276634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.834 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds