Wall clock time and date at job start Tue Mar 31 2020 08:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47226 * 21.96211 * 3 2 1 5 5 C 1.53004 * 109.46986 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46882 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47055 * 179.97438 * 6 5 4 8 8 O 1.21299 * 120.00117 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00342 * 180.02562 * 7 6 5 10 10 C 1.40081 * 120.00082 * 185.61293 * 9 7 6 11 11 C 1.38709 * 120.07990 * 34.06418 * 10 9 7 12 12 C 1.38189 * 120.01964 * 179.97438 * 11 10 9 13 13 C 1.38548 * 120.17976 * 0.03230 * 12 11 10 14 14 F 1.35098 * 119.92433 * 179.97438 * 13 12 11 15 15 C 1.38341 * 120.15132 * 359.97438 * 13 12 11 16 16 C 1.38741 * 119.98167 * 359.97438 * 15 13 12 17 17 O 1.35771 * 120.09067 * 180.29367 * 16 15 13 18 18 C 1.34813 * 116.99927 * 354.19117 * 17 16 15 19 19 H 1.07997 * 119.99919 * 354.51625 * 18 17 16 20 20 C 1.38632 * 120.00026 * 174.52021 * 18 17 16 21 21 N 1.31574 * 120.00036 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00077 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47381 * 59.99581 * 22 20 18 24 24 H 1.48500 * 109.47268 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46949 * 299.99652 * 22 20 18 26 26 H 4.44650 * 5.63361 * 179.97438 * 4 1 2 27 27 H 1.08996 * 109.47364 * 261.95469 * 3 2 1 28 28 H 1.09006 * 109.46726 * 141.96151 * 3 2 1 29 29 H 1.09000 * 109.47187 * 59.99728 * 4 3 2 30 30 H 1.08996 * 109.47091 * 299.99724 * 4 3 2 31 31 H 1.09000 * 109.47244 * 59.99929 * 5 4 3 32 32 H 1.08998 * 109.47366 * 299.99404 * 5 4 3 33 33 H 1.09000 * 109.46983 * 60.00082 * 6 5 4 34 34 H 1.08996 * 109.47398 * 300.00014 * 6 5 4 35 35 H 0.97000 * 119.99438 * 5.60852 * 9 7 6 36 36 H 1.08000 * 119.98996 * 359.97438 * 11 10 9 37 37 H 1.07999 * 119.90633 * 180.02562 * 12 11 10 38 38 H 1.08009 * 120.00670 * 180.02562 * 15 13 12 39 39 H 0.96995 * 119.99921 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3369 -0.5395 5 6 4.6867 -1.3359 -0.5400 6 6 5.1973 -2.6738 -1.0789 7 6 6.7043 -2.6726 -1.0801 8 8 7.3103 -1.6978 -0.6880 9 7 7.3787 -3.7547 -1.5168 10 6 8.7746 -3.8006 -1.4089 11 6 9.4087 -3.2010 -0.3308 12 6 10.7857 -3.2475 -0.2253 13 6 11.5372 -3.8916 -1.1948 14 9 12.8832 -3.9335 -1.0868 15 6 10.9124 -4.4919 -2.2732 16 6 9.5301 -4.4501 -2.3850 17 8 8.9142 -5.0437 -3.4394 18 6 9.7067 -5.5521 -4.4042 19 1 10.7750 -5.3994 -4.3617 20 6 9.1503 -6.2708 -5.4510 21 7 7.8489 -6.4572 -5.5026 22 14 10.2483 -6.9746 -6.7883 23 1 11.2226 -7.9180 -6.1833 24 1 9.4153 -7.6942 -7.7850 25 1 10.9799 -5.8707 -7.4600 26 1 -1.0498 -0.0005 0.0000 27 1 3.0093 0.1446 1.0175 28 1 3.0089 0.8103 -0.6333 29 1 2.7933 -1.4808 -1.5570 30 1 2.7937 -2.1464 0.0938 31 1 5.0503 -1.1918 0.4773 32 1 5.0493 -0.5265 -1.1736 33 1 4.8336 -2.8183 -2.0963 34 1 4.8347 -3.4830 -0.4451 35 1 6.8975 -4.5017 -1.9058 36 1 8.8259 -2.6976 0.4265 37 1 11.2775 -2.7803 0.6152 38 1 11.5004 -4.9938 -3.0275 39 1 7.4596 -6.9597 -6.2352 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120276634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:13 Heat of formation + Delta-G solvation = -65.554402 kcal Electronic energy + Delta-G solvation = -23453.863909 eV Core-core repulsion = 19663.034278 eV Total energy + Delta-G solvation = -3790.829631 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.84518 -41.61606 -40.24143 -38.10361 -36.98392 -35.52826 -34.31979 -34.07960 -31.35549 -30.93316 -29.66366 -27.42226 -26.12969 -24.09148 -23.26282 -22.13633 -21.18912 -20.15680 -19.51989 -18.88146 -18.19188 -18.07083 -17.20890 -17.00013 -16.72462 -16.54355 -16.00860 -15.77399 -15.51846 -15.44666 -15.19956 -15.08634 -14.81742 -14.24548 -13.97643 -13.76768 -13.74276 -13.42641 -13.05855 -12.69832 -12.60108 -12.52431 -12.34567 -12.17376 -12.13765 -11.69334 -11.56648 -11.19432 -11.08704 -10.94116 -10.84754 -10.74602 -9.57888 -8.76941 -8.52146 -6.18059 0.16290 0.44711 1.36720 1.44855 1.50348 1.63796 1.90266 1.95684 2.12228 2.20852 2.65496 3.04413 3.15908 3.43821 3.51106 3.74996 3.93589 4.00474 4.08058 4.16281 4.34342 4.43851 4.46286 4.60857 4.68335 4.80472 4.87140 4.90982 4.93970 5.01101 5.13855 5.21406 5.24324 5.28991 5.33504 5.37182 5.46988 5.57139 5.91912 6.02037 6.52210 6.74900 6.92410 7.18548 7.60856 8.68221 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.003255 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.016913 B = 8600.390923 C =10720.311944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.215 4.215 3 C -0.017 4.017 4 C -0.106 4.106 5 C -0.096 4.096 6 C -0.132 4.132 7 C 0.507 3.493 8 O -0.565 6.565 9 N -0.656 5.656 10 C 0.061 3.939 11 C -0.051 4.051 12 C -0.204 4.204 13 C 0.122 3.878 14 F -0.145 7.145 15 C -0.265 4.265 16 C 0.129 3.871 17 O -0.201 6.201 18 C -0.417 4.417 19 H 0.097 0.903 20 C -0.007 4.007 21 N -0.904 5.904 22 Si 1.010 2.990 23 H -0.260 1.260 24 H -0.269 1.269 25 H -0.263 1.263 26 H 0.241 0.759 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.418 0.582 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.135 0.865 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.263 6.654 9.502 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.215 4.215 3 C -0.053 4.053 4 C -0.143 4.143 5 C -0.134 4.134 6 C -0.171 4.171 7 C 0.297 3.703 8 O -0.444 6.444 9 N -0.301 5.301 10 C -0.034 4.034 11 C -0.071 4.071 12 C -0.223 4.223 13 C 0.102 3.898 14 F -0.123 7.123 15 C -0.286 4.286 16 C 0.076 3.924 17 O -0.106 6.106 18 C -0.493 4.493 19 H 0.115 0.885 20 C -0.207 4.207 21 N -0.540 5.540 22 Si 0.830 3.170 23 H -0.184 1.184 24 H -0.193 1.193 25 H -0.187 1.187 26 H 0.258 0.742 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.140 0.860 35 H 0.254 0.746 36 H 0.168 0.832 37 H 0.176 0.824 38 H 0.153 0.847 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.247 7.196 9.594 14.555 hybrid contribution 0.524 -0.835 -1.078 1.460 sum -7.724 6.361 8.517 13.140 Atomic orbital electron populations 1.25687 0.96964 1.00126 1.00647 1.23751 0.95588 1.01210 1.01000 1.18815 0.84004 0.99094 1.03399 1.21463 0.94032 0.96771 1.02049 1.21274 0.94751 0.95320 1.02101 1.21734 0.87830 1.01996 1.05589 1.21606 0.92004 0.80845 0.75802 1.90650 1.71367 1.33985 1.48372 1.43433 1.04313 1.20926 1.61451 1.17176 0.83943 1.06459 0.95781 1.20698 0.93838 0.97315 0.95232 1.20868 0.93489 1.06553 1.01438 1.17458 0.76535 0.99773 0.96044 1.91428 1.29911 1.94914 1.96086 1.20957 0.94567 1.10791 1.02316 1.19228 0.90831 0.94473 0.87907 1.83902 1.35199 1.64924 1.26604 1.21677 0.91773 1.34721 1.01126 0.88542 1.26360 0.98064 0.96177 1.00130 1.70102 1.11715 1.39129 1.33050 0.84758 0.77255 0.78642 0.76364 1.18400 1.19347 1.18725 0.74236 0.88628 0.89148 0.91465 0.90697 0.91048 0.92125 0.87555 0.86049 0.74565 0.83185 0.82379 0.84745 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.52 19.25 74.32 1.43 -2.09 16 2 C -0.22 -3.99 13.34 31.12 0.42 -3.58 16 3 C -0.02 -0.26 5.70 28.79 0.16 -0.10 16 4 C -0.11 -1.64 5.17 30.59 0.16 -1.48 16 5 C -0.10 -1.83 4.50 30.60 0.14 -1.69 16 6 C -0.13 -2.75 5.70 29.85 0.17 -2.58 16 7 C 0.51 15.78 7.56 87.66 0.66 16.44 16 8 O -0.56 -20.58 13.74 -3.09 -0.04 -20.62 16 9 N -0.66 -23.20 5.20 -303.03 -1.58 -24.77 16 10 C 0.06 2.49 6.28 38.23 0.24 2.73 16 11 C -0.05 -1.82 8.65 22.37 0.19 -1.63 16 12 C -0.20 -6.96 10.02 22.33 0.22 -6.74 16 13 C 0.12 4.68 7.29 22.37 0.16 4.85 16 14 F -0.14 -5.26 17.26 44.97 0.78 -4.49 16 15 C -0.27 -11.66 9.11 22.41 0.20 -11.45 16 16 C 0.13 6.04 6.66 22.69 0.15 6.19 16 17 O -0.20 -10.82 9.30 -22.80 -0.21 -11.03 16 18 C -0.42 -22.62 9.44 67.91 0.64 -21.98 16 19 H 0.10 4.93 5.30 -2.91 -0.02 4.92 16 20 C -0.01 -0.39 5.49 84.83 0.47 0.08 16 21 N -0.90 -50.35 13.67 21.61 0.30 -50.05 16 22 Si 1.01 40.52 29.55 68.60 2.03 42.54 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 25 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 26 H 0.24 2.11 7.80 -4.43 -0.03 2.07 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 32 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 33 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.42 14.28 8.55 -92.71 -0.79 13.49 16 36 H 0.15 5.00 6.48 -2.91 -0.02 4.98 16 37 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.13 6.01 5.71 -2.91 -0.02 5.99 16 39 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -66.26 349.49 6.98 -59.28 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.29 Total: 32.17 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 5.42 Total: -23.02 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -1.28 Total: -74.83 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.25 Total: -31.66 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.78 Total: -4.49 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.54 kcal Total: -66.26 6.98 -59.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120276634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.276 kcal (2) G-P(sol) polarization free energy of solvation -66.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds