Wall clock time and date at job start Tue Mar 31 2020 08:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38080 * 119.98157 * 30.83277 * 3 2 1 5 5 C 1.38260 * 119.90556 * 179.97438 * 4 3 2 6 6 C 1.38165 * 120.15272 * 0.08143 * 5 4 3 7 7 C 1.38462 * 120.30221 * 359.97124 * 6 5 4 8 8 C 1.38612 * 119.57128 * 359.88209 * 7 6 5 9 9 N 1.40173 * 120.81213 * 180.27814 * 8 7 6 10 10 C 1.34780 * 120.55013 * 166.54907 * 9 8 7 11 11 O 1.21285 * 119.99743 * 326.18703 * 10 9 8 12 12 C 1.50705 * 119.99905 * 146.18940 * 10 9 8 13 13 S 1.80993 * 109.46800 * 179.97438 * 12 10 9 14 14 C 1.76209 * 99.99759 * 180.02562 * 13 12 10 15 15 H 1.07994 * 119.99787 * 359.97438 * 14 13 12 16 16 C 1.38803 * 119.99792 * 180.02562 * 14 13 12 17 17 N 1.31630 * 120.00239 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99561 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47103 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46608 * 120.00278 * 18 16 14 21 21 H 1.48499 * 109.46837 * 239.99846 * 18 16 14 22 22 C 1.46932 * 118.90086 * 346.57572 * 9 8 7 23 23 C 1.53424 * 107.85184 * 44.54397 * 22 9 8 24 24 C 1.50595 * 118.93090 * 179.67950 * 7 6 5 25 25 H 1.09002 * 109.47175 * 53.81759 * 1 2 3 26 26 H 1.08999 * 109.46572 * 173.81903 * 1 2 3 27 27 H 1.09000 * 109.47032 * 293.82222 * 1 2 3 28 28 H 1.08997 * 109.47424 * 240.00438 * 2 1 3 29 29 H 1.08999 * 109.47606 * 119.99974 * 2 1 3 30 30 H 1.07999 * 120.04238 * 359.95333 * 4 3 2 31 31 H 1.08004 * 119.92057 * 180.09884 * 5 4 3 32 32 H 1.08000 * 119.84679 * 179.97438 * 6 5 4 33 33 H 1.08996 * 109.46956 * 300.00226 * 12 10 9 34 34 H 1.09002 * 109.46510 * 59.99994 * 12 10 9 35 35 H 0.96996 * 120.00161 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.79417 * 164.15507 * 22 9 8 37 37 H 1.09004 * 109.78706 * 284.94033 * 22 9 8 38 38 H 1.09006 * 109.57367 * 56.60738 * 23 22 9 39 39 H 1.08996 * 109.57459 * 176.98795 * 23 22 9 40 40 H 1.09005 * 109.29761 * 279.77224 * 24 7 6 41 41 H 1.08997 * 109.29915 * 39.35151 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 1.2940 2.4137 0.6130 5 6 1.7566 3.7167 0.6125 6 6 2.9548 4.0275 -0.0013 7 6 3.7006 3.0380 -0.6191 8 6 3.2388 1.7311 -0.6163 9 7 3.9756 0.7080 -1.2289 10 6 3.6740 -0.5854 -0.9992 11 8 3.2594 -0.9275 0.0881 12 6 3.8519 -1.6065 -2.0933 13 16 3.3665 -3.2386 -1.4799 14 6 3.6670 -4.2085 -2.9201 15 1 4.0415 -3.7399 -3.8181 16 6 3.4214 -5.5744 -2.9006 17 7 2.9645 -6.1455 -1.8061 18 14 3.7393 -6.6024 -4.4276 19 1 4.2465 -5.7285 -5.5158 20 1 4.7488 -7.6470 -4.1196 21 1 2.4746 -7.2487 -4.8613 22 6 5.0826 1.0688 -2.1252 23 6 5.8915 2.1832 -1.4485 24 6 4.9983 3.4125 -1.2850 25 1 -0.3633 0.6067 -0.8295 26 1 -0.3632 -1.0217 -0.1107 27 1 -0.3633 0.4151 0.9401 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.3564 2.1729 1.0918 31 1 1.1801 4.4932 1.0933 32 1 3.3112 5.0470 0.0010 33 1 3.2280 -1.3379 -2.9458 34 1 4.8972 -1.6304 -2.4012 35 1 2.7925 -7.1000 -1.7926 36 1 5.7194 0.2004 -2.2934 37 1 4.6863 1.4256 -3.0759 38 1 6.2293 1.8457 -0.4686 39 1 6.7528 2.4361 -2.0666 40 1 4.7899 3.8383 -2.2666 41 1 5.5163 4.1519 -0.6743 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120905775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:10 Heat of formation + Delta-G solvation = 46.493397 kcal Electronic energy + Delta-G solvation = -23070.280837 eV Core-core repulsion = 19850.523139 eV Total energy + Delta-G solvation = -3219.757698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.48186 -38.64873 -36.91816 -34.04750 -32.62955 -32.47470 -30.85019 -29.42682 -28.19546 -25.71613 -25.45109 -24.22719 -23.12881 -21.93013 -19.66452 -19.31371 -17.76997 -17.44025 -16.75963 -16.20302 -15.16994 -15.03526 -14.84187 -14.47730 -14.40510 -13.97970 -13.83405 -13.61496 -13.30323 -13.26143 -12.81391 -12.72698 -12.62268 -12.42112 -11.71858 -11.45646 -11.32786 -11.17574 -11.10282 -11.04209 -10.90609 -10.81433 -10.40503 -10.26948 -9.84321 -9.66223 -9.12052 -8.92812 -8.37433 -8.31950 -7.56326 -6.56591 -6.26653 -3.97836 1.40343 1.51013 2.69120 2.79087 3.18755 3.22465 3.28149 3.51027 3.85033 4.15372 4.49899 4.64032 4.80227 4.84714 4.91292 5.08382 5.09280 5.17904 5.26314 5.41358 5.42330 5.44326 5.51808 5.55147 5.61074 5.69792 5.79031 5.80111 5.86720 5.98010 6.00795 6.08363 6.17492 6.25319 6.39643 6.46651 6.50337 6.62364 6.78756 6.86670 7.20044 7.44661 7.55892 8.30709 8.31491 9.19290 10.80845 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021625 B = 0.004070 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.462342 B = 6877.444855 C = 7844.681553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.090 4.090 3 C -0.105 4.105 4 C -0.095 4.095 5 C -0.151 4.151 6 C -0.102 4.102 7 C -0.126 4.126 8 C 0.178 3.822 9 N -0.573 5.573 10 C 0.505 3.495 11 O -0.450 6.450 12 C -0.152 4.152 13 S -0.061 6.061 14 C -0.534 4.534 15 H 0.073 0.927 16 C 0.075 3.925 17 N -0.867 5.867 18 Si 0.918 3.082 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.111 3.889 23 C -0.135 4.135 24 C -0.073 4.073 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.268 0.732 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.866 20.016 0.702 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.126 4.126 3 C -0.108 4.108 4 C -0.114 4.114 5 C -0.170 4.170 6 C -0.121 4.121 7 C -0.129 4.129 8 C 0.082 3.918 9 N -0.298 5.298 10 C 0.296 3.704 11 O -0.322 6.322 12 C -0.302 4.302 13 S 0.166 5.834 14 C -0.682 4.682 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.502 5.502 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.011 4.011 23 C -0.173 4.173 24 C -0.110 4.110 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.263 19.204 2.344 19.387 hybrid contribution 0.611 -0.187 -2.290 2.377 sum 1.874 19.016 0.055 19.108 Atomic orbital electron populations 1.22068 0.96942 1.01845 1.00608 1.22020 0.93696 0.91564 1.05283 1.19877 0.93534 0.97021 1.00358 1.20894 0.99534 0.92197 0.98769 1.20916 0.97175 0.96474 1.02443 1.20764 0.94975 0.98091 0.98276 1.19326 0.97867 0.91792 1.03931 1.17428 0.91047 0.87504 0.95828 1.45484 1.33086 1.04525 1.46722 1.20013 0.78065 0.82002 0.90284 1.90810 1.37098 1.79099 1.25163 1.23660 1.05267 1.01343 0.99961 1.85286 1.85633 0.92793 1.19706 1.22876 1.51305 0.95140 0.98922 0.90839 1.24983 0.94506 0.96858 0.97122 1.70017 1.41868 1.11594 1.26740 0.86121 0.78148 0.79694 0.81581 1.19588 1.20524 1.20533 1.21849 0.87567 0.99176 0.92535 1.21869 0.98119 0.95221 1.02108 1.20340 0.92492 0.97764 1.00401 0.93450 0.92121 0.93304 0.90258 0.85488 0.85744 0.86449 0.86305 0.89213 0.89079 0.92193 0.89013 0.90945 0.90873 0.89810 0.90750 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.03 37.16 0.34 -2.01 16 2 C -0.09 -1.56 3.91 -27.88 -0.11 -1.67 16 3 C -0.10 -1.66 5.53 -104.40 -0.58 -2.24 16 4 C -0.10 -1.28 9.14 -39.63 -0.36 -1.65 16 5 C -0.15 -1.76 10.04 -39.60 -0.40 -2.16 16 6 C -0.10 -1.16 9.66 -39.53 -0.38 -1.55 16 7 C -0.13 -1.59 5.76 -104.45 -0.60 -2.19 16 8 C 0.18 2.73 6.25 -83.63 -0.52 2.21 16 9 N -0.57 -8.85 2.97 -113.67 -0.34 -9.19 16 10 C 0.50 9.39 4.69 -10.98 -0.05 9.33 16 11 O -0.45 -9.43 10.45 5.55 0.06 -9.38 16 12 C -0.15 -3.01 5.47 36.01 0.20 -2.81 16 13 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 14 C -0.53 -14.87 9.50 30.94 0.29 -14.58 16 15 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 16 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 17 N -0.87 -25.62 13.22 55.49 0.73 -24.89 16 18 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.11 1.29 6.04 -3.59 -0.02 1.26 16 23 C -0.14 -1.29 6.11 -26.60 -0.16 -1.45 16 24 C -0.07 -0.69 5.77 -28.02 -0.16 -0.85 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.63 6.88 -51.93 -0.36 0.27 16 28 H 0.08 1.55 4.51 -48.25 -0.22 1.33 16 29 H 0.13 2.48 6.02 -49.21 -0.30 2.18 16 30 H 0.12 1.48 6.34 -52.49 -0.33 1.15 16 31 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 34 H 0.09 1.66 7.01 -51.91 -0.36 1.29 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.09 1.02 6.72 -51.93 -0.35 0.67 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -31.95 335.31 -10.03 -41.98 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.69 Total: 2.51 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -2.62 Total: -18.35 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.40 Total: -34.08 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.06 Total: -9.38 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.95 -10.03 -41.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120905775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.474 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds