Wall clock time and date at job start Tue Mar 31 2020 08:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38080 * 119.98157 * 30.83277 * 3 2 1 5 5 C 1.38260 * 119.90556 * 179.97438 * 4 3 2 6 6 C 1.38165 * 120.15272 * 0.08143 * 5 4 3 7 7 C 1.38462 * 120.30221 * 359.97124 * 6 5 4 8 8 C 1.38612 * 119.57128 * 359.88209 * 7 6 5 9 9 N 1.40173 * 120.81213 * 180.27814 * 8 7 6 10 10 C 1.34780 * 120.55013 * 166.54907 * 9 8 7 11 11 O 1.21285 * 119.99743 * 326.18703 * 10 9 8 12 12 C 1.50705 * 119.99905 * 146.18940 * 10 9 8 13 13 S 1.80993 * 109.46800 * 179.97438 * 12 10 9 14 14 C 1.76209 * 99.99759 * 180.02562 * 13 12 10 15 15 H 1.07994 * 119.99787 * 359.97438 * 14 13 12 16 16 C 1.38803 * 119.99792 * 180.02562 * 14 13 12 17 17 N 1.31630 * 120.00239 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99561 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47103 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46608 * 120.00278 * 18 16 14 21 21 H 1.48499 * 109.46837 * 239.99846 * 18 16 14 22 22 C 1.46932 * 118.90086 * 346.57572 * 9 8 7 23 23 C 1.53424 * 107.85184 * 44.54397 * 22 9 8 24 24 C 1.50595 * 118.93090 * 179.67950 * 7 6 5 25 25 H 1.09002 * 109.47175 * 53.81759 * 1 2 3 26 26 H 1.08999 * 109.46572 * 173.81903 * 1 2 3 27 27 H 1.09000 * 109.47032 * 293.82222 * 1 2 3 28 28 H 1.08997 * 109.47424 * 240.00438 * 2 1 3 29 29 H 1.08999 * 109.47606 * 119.99974 * 2 1 3 30 30 H 1.07999 * 120.04238 * 359.95333 * 4 3 2 31 31 H 1.08004 * 119.92057 * 180.09884 * 5 4 3 32 32 H 1.08000 * 119.84679 * 179.97438 * 6 5 4 33 33 H 1.08996 * 109.46956 * 300.00226 * 12 10 9 34 34 H 1.09002 * 109.46510 * 59.99994 * 12 10 9 35 35 H 0.96996 * 120.00161 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.79417 * 164.15507 * 22 9 8 37 37 H 1.09004 * 109.78706 * 284.94033 * 22 9 8 38 38 H 1.09006 * 109.57367 * 56.60738 * 23 22 9 39 39 H 1.08996 * 109.57459 * 176.98795 * 23 22 9 40 40 H 1.09005 * 109.29761 * 279.77224 * 24 7 6 41 41 H 1.08997 * 109.29915 * 39.35151 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 1.2940 2.4137 0.6130 5 6 1.7566 3.7167 0.6125 6 6 2.9548 4.0275 -0.0013 7 6 3.7006 3.0380 -0.6191 8 6 3.2388 1.7311 -0.6163 9 7 3.9756 0.7080 -1.2289 10 6 3.6740 -0.5854 -0.9992 11 8 3.2594 -0.9275 0.0881 12 6 3.8519 -1.6065 -2.0933 13 16 3.3665 -3.2386 -1.4799 14 6 3.6670 -4.2085 -2.9201 15 1 4.0415 -3.7399 -3.8181 16 6 3.4214 -5.5744 -2.9006 17 7 2.9645 -6.1455 -1.8061 18 14 3.7393 -6.6024 -4.4276 19 1 4.2465 -5.7285 -5.5158 20 1 4.7488 -7.6470 -4.1196 21 1 2.4746 -7.2487 -4.8613 22 6 5.0826 1.0688 -2.1252 23 6 5.8915 2.1832 -1.4485 24 6 4.9983 3.4125 -1.2850 25 1 -0.3633 0.6067 -0.8295 26 1 -0.3632 -1.0217 -0.1107 27 1 -0.3633 0.4151 0.9401 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.3564 2.1729 1.0918 31 1 1.1801 4.4932 1.0933 32 1 3.3112 5.0470 0.0010 33 1 3.2280 -1.3379 -2.9458 34 1 4.8972 -1.6304 -2.4012 35 1 2.7925 -7.1000 -1.7926 36 1 5.7194 0.2004 -2.2934 37 1 4.6863 1.4256 -3.0759 38 1 6.2293 1.8457 -0.4686 39 1 6.7528 2.4361 -2.0666 40 1 4.7899 3.8383 -2.2666 41 1 5.5163 4.1519 -0.6743 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120905775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:09 Heat of formation + Delta-G solvation = 28.749622 kcal Electronic energy + Delta-G solvation = -23071.050265 eV Core-core repulsion = 19850.523139 eV Total energy + Delta-G solvation = -3220.527126 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.69135 -39.81936 -37.94656 -35.18983 -34.60610 -33.70022 -31.97128 -30.70423 -29.38008 -27.70116 -26.57154 -25.37924 -24.11112 -23.10509 -20.87169 -20.37070 -19.59930 -18.77093 -17.92185 -17.42486 -16.90215 -16.42880 -16.10021 -15.72921 -15.65012 -15.53488 -14.83011 -14.66797 -14.49488 -14.36503 -14.26232 -14.10028 -13.89312 -13.44861 -13.19276 -12.94731 -12.74820 -12.64228 -12.50751 -12.28801 -12.06066 -11.84538 -11.76757 -11.43269 -11.35835 -11.17577 -10.99308 -10.32579 -10.22201 -9.40829 -8.71632 -8.64742 -8.37230 -6.15059 0.38333 0.47419 1.19698 1.35466 1.39755 1.42719 1.54813 1.98439 2.24373 2.86120 2.97411 3.20105 3.56029 3.74111 3.82421 3.93718 3.97919 4.05786 4.19419 4.32561 4.34667 4.41183 4.42195 4.43518 4.46145 4.59639 4.72019 4.79791 4.83236 5.00659 5.01216 5.06419 5.16173 5.19754 5.26470 5.28228 5.39964 5.46162 5.55711 5.68781 5.78891 6.17614 6.18065 6.26300 6.94853 7.04604 8.72067 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021625 B = 0.004070 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.462342 B = 6877.444855 C = 7844.681553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.133 4.133 4 C -0.107 4.107 5 C -0.145 4.145 6 C -0.099 4.099 7 C -0.126 4.126 8 C 0.146 3.854 9 N -0.570 5.570 10 C 0.507 3.493 11 O -0.486 6.486 12 C -0.126 4.126 13 S -0.137 6.137 14 C -0.547 4.547 15 H 0.080 0.920 16 C 0.017 3.983 17 N -0.910 5.910 18 Si 0.996 3.004 19 H -0.258 1.258 20 H -0.273 1.273 21 H -0.274 1.274 22 C 0.098 3.902 23 C -0.129 4.129 24 C -0.072 4.072 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.134 0.866 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.271 0.729 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 23.250 -0.877 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.136 4.136 4 C -0.125 4.125 5 C -0.164 4.164 6 C -0.118 4.118 7 C -0.129 4.129 8 C 0.051 3.949 9 N -0.295 5.295 10 C 0.299 3.701 11 O -0.361 6.361 12 C -0.277 4.277 13 S 0.090 5.910 14 C -0.695 4.695 15 H 0.099 0.901 16 C -0.188 4.188 17 N -0.546 5.546 18 Si 0.818 3.182 19 H -0.181 1.181 20 H -0.198 1.198 21 H -0.199 1.199 22 C -0.023 4.023 23 C -0.166 4.166 24 C -0.109 4.109 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.151 0.849 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.136 0.864 40 H 0.113 0.887 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.349 22.487 0.755 22.622 hybrid contribution 0.273 -1.005 -1.751 2.037 sum 2.621 21.481 -0.996 21.664 Atomic orbital electron populations 1.21999 0.95534 1.01191 1.02042 1.21620 0.94858 0.92694 1.02494 1.19922 0.94897 0.96336 1.02414 1.21084 0.99868 0.92735 0.98807 1.21324 0.97455 0.96167 1.01440 1.21237 0.94366 0.99444 0.96713 1.19795 0.99198 0.90622 1.03283 1.17764 0.91304 0.88570 0.97302 1.45438 1.33640 1.03280 1.47111 1.19739 0.77808 0.83142 0.89430 1.90845 1.39044 1.79960 1.26205 1.23457 1.06102 0.97764 1.00357 1.85418 1.86542 0.97621 1.21401 1.23214 1.51293 0.95827 0.99163 0.90150 1.26077 0.93913 0.98186 1.00635 1.70171 1.43084 1.12072 1.29288 0.84938 0.78199 0.77746 0.77290 1.18121 1.19787 1.19948 1.22221 0.86836 1.00290 0.92903 1.21875 0.98839 0.94359 1.01554 1.20461 0.90851 0.98022 1.01529 0.92568 0.93680 0.91258 0.93250 0.88606 0.84857 0.83378 0.82681 0.88542 0.87288 0.91949 0.88993 0.89262 0.92627 0.86442 0.88733 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 9.03 71.98 0.65 -4.06 16 2 C -0.08 -2.99 3.91 29.85 0.12 -2.88 16 3 C -0.13 -4.27 5.53 -19.72 -0.11 -4.38 16 4 C -0.11 -2.75 9.14 22.24 0.20 -2.55 16 5 C -0.15 -2.92 10.04 22.26 0.22 -2.70 16 6 C -0.10 -1.86 9.66 22.31 0.22 -1.64 16 7 C -0.13 -2.83 5.76 -19.75 -0.11 -2.94 16 8 C 0.15 4.40 6.25 38.08 0.24 4.63 16 9 N -0.57 -17.64 2.97 -631.94 -1.88 -19.52 16 10 C 0.51 19.76 4.69 87.66 0.41 20.18 16 11 O -0.49 -21.97 10.45 -3.04 -0.03 -22.00 16 12 C -0.13 -5.16 5.47 71.24 0.39 -4.77 16 13 S -0.14 -7.53 20.57 -56.49 -1.16 -8.69 16 14 C -0.55 -31.18 9.50 67.96 0.65 -30.54 16 15 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 16 C 0.02 0.96 5.49 84.86 0.47 1.42 16 17 N -0.91 -55.49 13.22 21.65 0.29 -55.20 16 18 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 19 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 C 0.10 2.12 6.04 86.44 0.52 2.64 16 23 C -0.13 -2.06 6.11 30.68 0.19 -1.87 16 24 C -0.07 -1.06 5.77 29.76 0.17 -0.89 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.83 6.88 -2.39 -0.02 1.82 16 28 H 0.05 2.08 4.51 -13.08 -0.06 2.02 16 29 H 0.10 4.14 6.02 -51.28 -0.31 3.83 16 30 H 0.13 3.04 6.34 -2.91 -0.02 3.03 16 31 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.10 3.79 8.14 -2.40 -0.02 3.77 16 34 H 0.11 4.02 7.01 -2.39 -0.02 4.00 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.09 1.93 6.72 -2.39 -0.02 1.91 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.10 1.07 8.12 -2.39 -0.02 1.05 16 Total: -1.00 -73.95 335.31 4.15 -69.80 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.69 Total: 20.45 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 4.22 Total: -30.34 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -1.59 Total: -74.72 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.03 Total: -22.00 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -7.53 SS G_CDS: -1.16 Total: -8.69 kcal Total: -73.95 4.15 -69.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120905775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.551 kcal (2) G-P(sol) polarization free energy of solvation -73.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds