Wall clock time and date at job start Tue Mar 31 2020 08:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47208 * 2 1 4 4 H 1.08998 * 109.47366 * 185.17928 * 3 2 1 5 5 C 1.50709 * 109.46890 * 305.17632 * 3 2 1 6 6 H 1.07996 * 120.00414 * 119.99986 * 5 3 2 7 7 C 1.37880 * 119.99462 * 300.00217 * 5 3 2 8 8 N 1.31513 * 119.99522 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00180 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.46961 * 90.00608 * 9 7 5 11 11 H 1.48505 * 109.47098 * 209.99939 * 9 7 5 12 12 H 1.48494 * 109.47435 * 329.99922 * 9 7 5 13 13 N 1.46903 * 109.47353 * 65.17056 * 3 2 1 14 14 C 1.46903 * 110.99330 * 85.90800 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.80951 * 14 13 3 16 16 C 1.38217 * 119.99265 * 90.00014 * 15 14 13 17 17 C 1.38434 * 119.97670 * 179.97438 * 16 15 14 18 18 F 1.35102 * 120.02441 * 179.97438 * 17 16 15 19 19 C 1.38478 * 119.94867 * 359.97438 * 17 16 15 20 20 C 1.38180 * 119.97632 * 0.02562 * 19 17 16 21 21 C 1.50693 * 119.98882 * 180.02562 * 20 19 17 22 22 F 1.39898 * 109.47411 * 359.97438 * 21 20 19 23 23 F 1.39892 * 109.47390 * 119.99784 * 21 20 19 24 24 F 1.39908 * 109.47118 * 240.00039 * 21 20 19 25 25 C 1.38228 * 119.98188 * 269.71880 * 15 14 13 26 26 H 1.09001 * 109.47141 * 54.86044 * 1 2 3 27 27 H 1.09001 * 109.47539 * 294.86009 * 1 2 3 28 28 H 1.09002 * 109.47365 * 174.85792 * 1 2 3 29 29 H 1.09002 * 109.46937 * 119.99479 * 2 1 3 30 30 H 1.08998 * 109.47536 * 239.99058 * 2 1 3 31 31 H 0.97000 * 119.99835 * 180.02562 * 8 7 5 32 32 H 1.00893 * 110.99853 * 321.95100 * 13 3 2 33 33 H 1.08994 * 109.46864 * 294.80116 * 14 13 3 34 34 H 1.08994 * 109.47486 * 54.80803 * 14 13 3 35 35 H 1.08000 * 120.00757 * 359.94909 * 16 15 14 36 36 H 1.08003 * 120.01324 * 179.97438 * 19 17 16 37 37 H 1.07997 * 119.97646 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0928 5 6 1.4357 2.1889 -1.1614 6 1 0.8266 3.0628 -0.9836 7 6 1.6605 1.7560 -2.4511 8 7 1.1335 2.4076 -3.4646 9 14 2.7145 0.2448 -2.7587 10 1 1.8541 -0.9655 -2.7671 11 1 3.3969 0.3760 -4.0711 12 1 3.7305 0.1225 -1.6826 13 7 1.6549 2.0980 1.2570 14 6 2.6438 1.8366 2.3114 15 6 2.2842 2.6255 3.5440 16 6 1.4574 2.0706 4.5026 17 6 1.1277 2.7953 5.6351 18 9 0.3192 2.2540 6.5725 19 6 1.6271 4.0755 5.8063 20 6 2.4534 4.6283 4.8466 21 6 2.9976 6.0212 5.0330 22 9 2.5296 6.5468 6.2421 23 9 4.3956 5.9769 5.0533 24 9 2.5720 6.8333 3.9762 25 6 2.7860 3.9016 3.7182 26 1 -0.3633 0.5915 -0.8404 27 1 -0.3634 0.4320 0.9324 28 1 -0.3634 -1.0235 -0.0921 29 1 1.8933 -0.5138 0.8901 30 1 1.8934 -0.5140 -0.8899 31 1 1.2913 2.1029 -4.3719 32 1 0.7324 1.8103 1.5470 33 1 2.6486 0.7730 2.5493 34 1 3.6328 2.1358 1.9643 35 1 1.0685 1.0720 4.3680 36 1 1.3702 4.6420 6.6892 37 1 3.4352 4.3329 2.9707 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121541569.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:34 Heat of formation + Delta-G solvation = -169.264719 kcal Electronic energy + Delta-G solvation = -24886.582190 eV Core-core repulsion = 20549.398601 eV Total energy + Delta-G solvation = -4337.183589 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.30364 -49.13220 -47.83949 -47.73127 -39.62032 -36.94811 -33.63269 -31.99787 -31.46362 -30.17163 -27.13963 -26.38815 -24.87409 -23.27311 -22.57070 -21.47127 -19.66515 -18.62551 -18.60006 -18.50143 -16.65227 -16.64917 -16.44245 -16.23660 -15.84446 -15.23934 -14.97778 -14.64702 -14.55507 -14.19582 -13.98598 -13.91242 -13.90000 -13.74486 -13.27994 -13.21140 -12.85307 -12.78333 -12.59393 -12.30850 -12.24669 -11.74349 -11.51853 -11.06229 -10.82512 -10.61920 -10.50663 -9.96392 -9.55223 -9.36558 -9.22451 -8.95927 -8.58832 -7.58950 -6.08949 -4.05629 0.58691 0.86886 2.44715 3.09237 3.21679 3.29888 3.34417 3.46579 3.77058 4.06098 4.26041 4.35741 4.49630 4.64845 4.78067 4.97516 5.11904 5.13285 5.21415 5.53329 5.62673 5.74451 5.82516 5.83452 5.86404 5.93088 6.09559 6.24832 6.45057 6.49852 6.68032 6.71927 6.89002 7.21209 7.61809 7.77606 8.14940 8.62253 9.02711 9.53037 11.04309 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.003800 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.186566 B = 7366.835857 C = 8353.460444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.160 4.160 3 C 0.186 3.814 4 H 0.035 0.965 5 C -0.492 4.492 6 H 0.083 0.917 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.296 1.296 12 H -0.270 1.270 13 N -0.666 5.666 14 C 0.089 3.911 15 C -0.036 4.036 16 C -0.118 4.118 17 C 0.098 3.902 18 F -0.134 7.134 19 C -0.117 4.117 20 C -0.158 4.158 21 C 0.512 3.488 22 F -0.179 7.179 23 F -0.175 7.175 24 F -0.170 7.170 25 C -0.056 4.056 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.263 0.737 32 H 0.335 0.665 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.023 1.225 18.992 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.199 4.199 3 C 0.077 3.923 4 H 0.053 0.947 5 C -0.531 4.531 6 H 0.101 0.899 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.711 3.289 10 H -0.206 1.206 11 H -0.224 1.224 12 H -0.196 1.196 13 N -0.297 5.297 14 C -0.040 4.040 15 C -0.037 4.037 16 C -0.138 4.138 17 C 0.079 3.921 18 F -0.113 7.113 19 C -0.136 4.136 20 C -0.159 4.159 21 C 0.458 3.542 22 F -0.160 7.160 23 F -0.156 7.156 24 F -0.151 7.151 25 C -0.075 4.075 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.269 1.864 18.638 19.014 hybrid contribution 0.249 -1.720 0.123 1.742 sum 3.519 0.144 18.761 19.088 Atomic orbital electron populations 1.21657 0.95697 0.99718 1.02510 1.22512 0.97357 1.00941 0.99055 1.19749 0.96158 0.88280 0.88084 0.94690 1.20859 1.31415 1.12832 0.87971 0.89946 1.24887 0.95492 0.96571 0.96148 1.69874 1.44840 1.40128 0.98866 0.86982 0.81124 0.83871 0.76957 1.20629 1.22390 1.19552 1.60707 1.03774 1.62839 1.02337 1.21011 0.98412 0.95728 0.88891 1.19834 0.94604 0.93983 0.95304 1.21325 0.98508 1.01243 0.92676 1.17364 0.94099 0.92396 0.88251 1.91527 1.70531 1.85735 1.63498 1.20816 0.97879 0.94674 1.00224 1.19708 1.03798 0.93638 0.98761 1.18153 0.75787 0.86360 0.73911 1.93161 1.88447 1.88262 1.46131 1.93225 1.29469 1.96762 1.96152 1.93266 1.89648 1.75200 1.56991 1.20920 0.98119 0.93426 0.94993 0.89919 0.94130 0.95018 0.94873 0.93147 0.92645 0.84631 0.94506 0.89704 0.83981 0.83499 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.40 37.16 0.35 -2.25 16 2 C -0.16 -3.16 5.22 -26.73 -0.14 -3.30 16 3 C 0.19 4.00 1.93 -68.86 -0.13 3.87 16 4 H 0.04 0.79 6.76 -51.93 -0.35 0.44 16 5 C -0.49 -12.96 7.83 -34.43 -0.27 -13.23 16 6 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 7 C 0.07 1.94 5.42 -17.82 -0.10 1.84 16 8 N -0.90 -26.57 13.96 55.43 0.77 -25.79 16 9 Si 0.88 20.97 24.32 -169.99 -4.13 16.84 16 10 H -0.28 -6.52 6.92 56.52 0.39 -6.13 16 11 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.13 6.53 56.52 0.37 -5.76 16 13 N -0.67 -12.10 6.19 -109.22 -0.68 -12.78 16 14 C 0.09 1.27 5.64 -4.97 -0.03 1.24 16 15 C -0.04 -0.46 5.44 -104.63 -0.57 -1.03 16 16 C -0.12 -1.35 9.68 -39.52 -0.38 -1.73 16 17 C 0.10 1.11 7.30 -39.42 -0.29 0.82 16 18 F -0.13 -1.55 17.27 2.25 0.04 -1.51 16 19 C -0.12 -1.26 9.41 -39.51 -0.37 -1.63 16 20 C -0.16 -1.82 5.37 -104.63 -0.56 -2.38 16 21 C 0.51 5.84 3.32 36.00 0.12 5.96 16 22 F -0.18 -1.94 15.97 2.25 0.04 -1.90 16 23 F -0.17 -2.02 17.23 2.25 0.04 -1.98 16 24 F -0.17 -2.16 17.24 2.25 0.04 -2.12 16 25 C -0.06 -0.69 9.25 -39.57 -0.37 -1.06 16 26 H 0.08 1.81 6.85 -51.93 -0.36 1.45 16 27 H 0.04 0.67 6.63 -51.93 -0.34 0.32 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.03 0.57 7.50 -51.93 -0.39 0.18 16 30 H 0.05 1.08 3.42 -51.93 -0.18 0.90 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.33 5.80 6.69 -39.30 -0.26 5.54 16 33 H 0.04 0.49 7.48 -51.93 -0.39 0.10 16 34 H 0.08 1.21 7.87 -51.93 -0.41 0.80 16 35 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.15 1.34 7.16 -52.48 -0.38 0.96 16 37 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 318.93 15.07 4.81 4.81 Total: -1.00 -28.10 318.93 -5.74 -33.84 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.92 Total: 3.46 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -2.74 Total: -12.87 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.10 Total: -38.57 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.15 Total: -7.52 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.13 Total: 16.84 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.10 -5.74 -33.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121541569.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.422 kcal (2) G-P(sol) polarization free energy of solvation -28.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds