Wall clock time and date at job start Tue Mar 31 2020 08:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47208 * 2 1 4 4 H 1.08998 * 109.47366 * 185.17928 * 3 2 1 5 5 C 1.50709 * 109.46890 * 305.17632 * 3 2 1 6 6 H 1.07996 * 120.00414 * 119.99986 * 5 3 2 7 7 C 1.37880 * 119.99462 * 300.00217 * 5 3 2 8 8 N 1.31513 * 119.99522 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00180 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.46961 * 90.00608 * 9 7 5 11 11 H 1.48505 * 109.47098 * 209.99939 * 9 7 5 12 12 H 1.48494 * 109.47435 * 329.99922 * 9 7 5 13 13 N 1.46903 * 109.47353 * 65.17056 * 3 2 1 14 14 C 1.46903 * 110.99330 * 85.90800 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.80951 * 14 13 3 16 16 C 1.38217 * 119.99265 * 90.00014 * 15 14 13 17 17 C 1.38434 * 119.97670 * 179.97438 * 16 15 14 18 18 F 1.35102 * 120.02441 * 179.97438 * 17 16 15 19 19 C 1.38478 * 119.94867 * 359.97438 * 17 16 15 20 20 C 1.38180 * 119.97632 * 0.02562 * 19 17 16 21 21 C 1.50693 * 119.98882 * 180.02562 * 20 19 17 22 22 F 1.39898 * 109.47411 * 359.97438 * 21 20 19 23 23 F 1.39892 * 109.47390 * 119.99784 * 21 20 19 24 24 F 1.39908 * 109.47118 * 240.00039 * 21 20 19 25 25 C 1.38228 * 119.98188 * 269.71880 * 15 14 13 26 26 H 1.09001 * 109.47141 * 54.86044 * 1 2 3 27 27 H 1.09001 * 109.47539 * 294.86009 * 1 2 3 28 28 H 1.09002 * 109.47365 * 174.85792 * 1 2 3 29 29 H 1.09002 * 109.46937 * 119.99479 * 2 1 3 30 30 H 1.08998 * 109.47536 * 239.99058 * 2 1 3 31 31 H 0.97000 * 119.99835 * 180.02562 * 8 7 5 32 32 H 1.00893 * 110.99853 * 321.95100 * 13 3 2 33 33 H 1.08994 * 109.46864 * 294.80116 * 14 13 3 34 34 H 1.08994 * 109.47486 * 54.80803 * 14 13 3 35 35 H 1.08000 * 120.00757 * 359.94909 * 16 15 14 36 36 H 1.08003 * 120.01324 * 179.97438 * 19 17 16 37 37 H 1.07997 * 119.97646 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0928 5 6 1.4357 2.1889 -1.1614 6 1 0.8266 3.0628 -0.9836 7 6 1.6605 1.7560 -2.4511 8 7 1.1335 2.4076 -3.4646 9 14 2.7145 0.2448 -2.7587 10 1 1.8541 -0.9655 -2.7671 11 1 3.3969 0.3760 -4.0711 12 1 3.7305 0.1225 -1.6826 13 7 1.6549 2.0980 1.2570 14 6 2.6438 1.8366 2.3114 15 6 2.2842 2.6255 3.5440 16 6 1.4574 2.0706 4.5026 17 6 1.1277 2.7953 5.6351 18 9 0.3192 2.2540 6.5725 19 6 1.6271 4.0755 5.8063 20 6 2.4534 4.6283 4.8466 21 6 2.9976 6.0212 5.0330 22 9 2.5296 6.5468 6.2421 23 9 4.3956 5.9769 5.0533 24 9 2.5720 6.8333 3.9762 25 6 2.7860 3.9016 3.7182 26 1 -0.3633 0.5915 -0.8404 27 1 -0.3634 0.4320 0.9324 28 1 -0.3634 -1.0235 -0.0921 29 1 1.8933 -0.5138 0.8901 30 1 1.8934 -0.5140 -0.8899 31 1 1.2913 2.1029 -4.3719 32 1 0.7324 1.8103 1.5470 33 1 2.6486 0.7730 2.5493 34 1 3.6328 2.1358 1.9643 35 1 1.0685 1.0720 4.3680 36 1 1.3702 4.6420 6.6892 37 1 3.4352 4.3329 2.9707 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121541569.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:34 Heat of formation + Delta-G solvation = -185.777891 kcal Electronic energy + Delta-G solvation = -24887.298254 eV Core-core repulsion = 20549.398601 eV Total energy + Delta-G solvation = -4337.899653 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.22871 -50.01263 -48.74464 -48.68507 -40.57274 -38.45162 -35.00898 -33.73014 -32.54361 -31.37547 -28.83516 -27.29551 -26.19161 -24.96981 -23.48467 -22.48748 -21.34331 -19.54597 -19.53006 -19.48092 -18.40971 -17.54585 -17.41784 -17.27440 -16.98564 -16.71692 -16.37181 -15.59356 -15.51597 -15.45744 -15.12140 -14.99047 -14.89276 -14.84137 -14.66736 -14.55025 -14.26193 -14.17598 -13.72574 -13.44469 -13.33201 -12.96187 -12.78332 -12.61674 -12.43967 -12.20284 -12.06993 -11.64668 -11.24273 -11.09325 -10.65827 -10.35218 -9.89208 -9.01463 -8.20524 -6.20256 -0.31073 -0.04775 1.33257 1.37873 1.46980 1.53243 2.16459 2.36726 2.55989 2.86236 3.13827 3.14918 3.33503 3.53787 3.72588 3.83979 3.90959 4.10005 4.14060 4.31407 4.34636 4.47639 4.55642 4.69826 4.81475 4.84203 4.92311 4.94856 5.08011 5.19324 5.29730 5.32707 5.59879 5.62066 5.76306 6.04316 6.70792 6.74713 6.86345 7.42974 8.96928 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.003800 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.186566 B = 7366.835857 C = 8353.460444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.157 4.157 3 C 0.191 3.809 4 H 0.032 0.968 5 C -0.485 4.485 6 H 0.035 0.965 7 C 0.013 3.987 8 N -0.953 5.953 9 Si 0.941 3.059 10 H -0.269 1.269 11 H -0.305 1.305 12 H -0.246 1.246 13 N -0.680 5.680 14 C 0.093 3.907 15 C -0.046 4.046 16 C -0.110 4.110 17 C 0.094 3.906 18 F -0.134 7.134 19 C -0.109 4.109 20 C -0.162 4.162 21 C 0.516 3.484 22 F -0.174 7.174 23 F -0.176 7.176 24 F -0.180 7.180 25 C -0.064 4.064 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.262 0.738 32 H 0.339 0.661 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.654 -0.628 21.333 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.196 4.196 3 C 0.081 3.919 4 H 0.050 0.950 5 C -0.523 4.523 6 H 0.053 0.947 7 C -0.184 4.184 8 N -0.595 5.595 9 Si 0.769 3.231 10 H -0.195 1.195 11 H -0.234 1.234 12 H -0.170 1.170 13 N -0.312 5.312 14 C -0.036 4.036 15 C -0.047 4.047 16 C -0.129 4.129 17 C 0.075 3.925 18 F -0.113 7.113 19 C -0.128 4.128 20 C -0.163 4.163 21 C 0.462 3.538 22 F -0.155 7.155 23 F -0.157 7.157 24 F -0.161 7.161 25 C -0.083 4.083 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.178 0.822 36 H 0.182 0.818 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.905 0.007 21.026 21.385 hybrid contribution -0.004 -1.025 -0.487 1.135 sum 3.901 -1.018 20.539 20.931 Atomic orbital electron populations 1.21585 0.95223 1.00526 1.01890 1.22434 0.97811 0.99280 1.00120 1.19493 0.95327 0.89169 0.87885 0.95029 1.21110 1.29822 1.11382 0.90022 0.94711 1.25676 0.97019 0.99744 0.95918 1.70046 1.47464 1.42592 0.99350 0.85974 0.79917 0.80310 0.76853 1.19489 1.23375 1.17037 1.60482 1.05007 1.63139 1.02522 1.20997 0.97094 0.97296 0.88219 1.19639 0.95817 0.94006 0.95204 1.21464 0.97482 1.01923 0.92059 1.17389 0.94233 0.92539 0.88323 1.91533 1.70531 1.85735 1.63474 1.21015 0.96778 0.94630 1.00368 1.19686 1.04238 0.93575 0.98850 1.18112 0.75705 0.86236 0.73781 1.93169 1.88378 1.88215 1.45744 1.93222 1.29576 1.96755 1.96148 1.93248 1.89764 1.75523 1.57567 1.20984 0.98299 0.93684 0.95293 0.94031 0.91995 0.92778 0.91102 0.94522 0.92897 0.84102 0.92334 0.89924 0.82173 0.81789 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 9.40 71.98 0.68 -4.08 16 2 C -0.16 -5.75 5.22 30.59 0.16 -5.59 16 3 C 0.19 7.95 1.93 44.17 0.09 8.03 16 4 H 0.03 1.36 6.76 -2.39 -0.02 1.34 16 5 C -0.48 -26.08 7.83 25.60 0.20 -25.88 16 6 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 7 C 0.01 0.72 5.42 84.66 0.46 1.18 16 8 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 9 Si 0.94 43.12 24.32 68.60 1.67 44.79 16 10 H -0.27 -11.75 6.92 99.48 0.69 -11.06 16 11 H -0.31 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.25 -10.23 6.53 99.48 0.65 -9.58 16 13 N -0.68 -23.67 6.19 -499.45 -3.09 -26.76 16 14 C 0.09 2.41 5.64 85.56 0.48 2.89 16 15 C -0.05 -1.05 5.44 -19.87 -0.11 -1.16 16 16 C -0.11 -2.18 9.68 22.31 0.22 -1.96 16 17 C 0.09 1.88 7.30 22.37 0.16 2.04 16 18 F -0.13 -2.72 17.27 44.97 0.78 -1.94 16 19 C -0.11 -2.10 9.41 22.31 0.21 -1.89 16 20 C -0.16 -3.48 5.37 -19.87 -0.11 -3.59 16 21 C 0.52 11.15 3.32 71.23 0.24 11.39 16 22 F -0.17 -3.49 15.97 44.97 0.72 -2.77 16 23 F -0.18 -3.87 17.23 44.97 0.77 -3.09 16 24 F -0.18 -4.47 17.24 44.97 0.78 -3.70 16 25 C -0.06 -1.49 9.25 22.27 0.21 -1.28 16 26 H 0.04 1.80 6.85 -2.39 -0.02 1.78 16 27 H 0.06 1.88 6.63 -2.39 -0.02 1.86 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 2.08 7.50 -2.39 -0.02 2.06 16 30 H 0.04 1.45 3.42 -2.39 -0.01 1.44 16 31 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.34 11.10 6.69 -89.70 -0.60 10.50 16 33 H 0.06 1.29 7.48 -2.39 -0.02 1.28 16 34 H 0.08 2.18 7.87 -2.39 -0.02 2.17 16 35 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.16 2.54 7.16 -2.91 -0.02 2.52 16 37 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -62.19 318.93 5.25 -56.94 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.45 Total: 14.73 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 2.88 Total: -19.91 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -2.79 Total: -85.05 kcal Atomic # 9 Polarization: -14.54 SS G_CDS: 3.05 Total: -11.50 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.67 Total: 44.79 kcal Total: -62.19 5.25 -56.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121541569.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.839 kcal (2) G-P(sol) polarization free energy of solvation -62.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds