Wall clock time and date at job start Tue Mar 31 2020 08:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.26731 * 2 1 4 4 C 1.54348 * 110.30417 * 237.82421 * 2 1 3 5 5 C 1.54353 * 102.38995 * 214.72645 * 4 2 1 6 6 H 1.09002 * 110.38280 * 267.37593 * 5 4 2 7 7 N 1.46504 * 110.30340 * 145.26484 * 5 4 2 8 8 C 1.34771 * 119.99670 * 157.79437 * 7 5 4 9 9 O 1.21284 * 120.00353 * 0.02562 * 8 7 5 10 10 C 1.50703 * 119.99952 * 179.97438 * 8 7 5 11 11 S 1.80990 * 109.47384 * 180.02562 * 10 8 7 12 12 C 1.76199 * 100.00278 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99888 * 359.97438 * 12 11 10 14 14 C 1.38797 * 120.00452 * 179.97438 * 12 11 10 15 15 N 1.31633 * 120.00292 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99660 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 269.99524 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99704 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99697 * 16 14 12 20 20 C 1.51364 * 105.16984 * 26.34098 * 5 4 2 21 21 C 1.38502 * 130.39515 * 162.82076 * 20 5 4 22 22 C 1.38102 * 120.21996 * 179.97438 * 21 20 5 23 23 C 1.38249 * 119.93434 * 0.05938 * 22 21 20 24 24 C 1.38110 * 119.93302 * 359.97438 * 23 22 21 25 25 C 1.38211 * 109.76297 * 342.81779 * 20 5 4 26 26 H 1.08996 * 109.47196 * 299.37338 * 1 2 3 27 27 H 1.09002 * 109.46980 * 59.38242 * 1 2 3 28 28 H 1.09006 * 109.46968 * 179.37726 * 1 2 3 29 29 H 1.08995 * 109.47490 * 180.62377 * 3 2 1 30 30 H 1.09001 * 109.47590 * 300.62090 * 3 2 1 31 31 H 1.08998 * 109.46979 * 60.62233 * 3 2 1 32 32 H 1.09000 * 110.82415 * 96.50287 * 4 2 1 33 33 H 1.09001 * 110.81957 * 332.94765 * 4 2 1 34 34 H 0.96994 * 119.99668 * 337.79817 * 7 5 4 35 35 H 1.09001 * 109.47050 * 59.99941 * 10 8 7 36 36 H 1.08999 * 109.47014 * 300.00996 * 10 8 7 37 37 H 0.96997 * 119.99773 * 180.02562 * 15 14 12 38 38 H 1.08007 * 119.89112 * 359.97438 * 21 20 5 39 39 H 1.08000 * 120.03269 * 180.02562 * 22 21 20 40 40 H 1.08004 * 120.03226 * 180.02562 * 23 22 21 41 41 H 1.08005 * 119.88884 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0600 1.4352 0.0000 4 6 2.0656 -0.7709 -1.2252 5 6 3.3426 -1.4342 -0.6669 6 1 4.2101 -0.7994 -0.8473 7 7 3.5408 -2.7505 -1.2788 8 6 4.7684 -3.3063 -1.2987 9 8 5.7090 -2.7170 -0.8097 10 6 4.9723 -4.6606 -1.9276 11 16 6.7153 -5.1304 -1.7967 12 6 6.6683 -6.7041 -2.5877 13 1 5.7348 -7.0874 -2.9725 14 6 7.8309 -7.4513 -2.7163 15 7 7.7958 -8.6268 -3.3077 16 14 9.4454 -6.7887 -2.0502 17 1 10.1305 -6.0008 -3.1061 18 1 10.3123 -7.9212 -1.6366 19 1 9.1769 -5.9173 -0.8781 20 6 3.0968 -1.5778 0.8197 21 6 3.7340 -2.3670 1.7628 22 6 3.3325 -2.3326 3.0837 23 6 2.2903 -1.5090 3.4668 24 6 1.6531 -0.7218 2.5278 25 6 2.0553 -0.7538 1.2029 26 1 -0.3633 0.5040 0.8955 27 1 -0.3633 0.5234 -0.8844 28 1 -0.3633 -1.0277 -0.0112 29 1 3.1498 1.4202 -0.0112 30 1 1.6948 1.9575 -0.8843 31 1 1.7129 1.9507 0.8955 32 1 2.3083 -0.0863 -2.0380 33 1 1.3490 -1.5242 -1.5525 34 1 2.7886 -3.2218 -1.6696 35 1 4.6844 -4.6204 -2.9781 36 1 4.3578 -5.3975 -1.4105 37 1 8.6083 -9.1490 -3.3972 38 1 4.5477 -3.0114 1.4641 39 1 3.8318 -2.9490 3.8166 40 1 1.9753 -1.4806 4.4994 41 1 0.8387 -0.0789 2.8277 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127328398.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:24 Heat of formation + Delta-G solvation = -23.784266 kcal Electronic energy + Delta-G solvation = -22255.348515 eV Core-core repulsion = 19032.543349 eV Total energy + Delta-G solvation = -3222.805166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.97183 -38.90209 -36.78413 -34.53460 -32.44107 -31.62818 -30.12587 -29.47995 -28.17015 -27.58341 -25.62067 -23.93970 -22.81749 -21.31321 -20.39092 -19.43038 -17.89914 -16.70744 -16.50668 -15.93290 -15.46424 -15.15037 -14.97241 -14.81219 -14.46367 -13.96466 -13.90756 -13.60833 -13.29653 -13.14489 -13.04845 -12.79853 -12.56740 -12.29782 -12.13381 -11.85321 -11.75382 -11.39258 -11.26675 -11.20089 -11.01184 -10.95847 -10.68988 -10.57876 -9.85935 -9.54101 -9.04388 -8.98727 -8.84536 -8.67555 -8.50304 -6.91900 -6.29138 -4.00811 1.25135 1.34947 2.77205 2.95508 3.30567 3.34112 3.50273 3.62494 3.75543 4.10868 4.23469 4.32974 4.62531 4.70309 4.76602 4.82808 4.95761 4.99267 5.06665 5.10019 5.17647 5.30448 5.35214 5.36106 5.48114 5.52471 5.56158 5.67506 5.71457 5.75644 5.79423 5.88419 5.91397 6.01416 6.03539 6.07624 6.37565 6.47640 6.51093 6.66844 6.93918 7.61259 7.94030 8.41592 8.48850 9.17109 10.80185 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.024886 B = 0.003258 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.853952 B = 8592.058476 C = 9099.221083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.023 4.023 3 C -0.136 4.136 4 C -0.117 4.117 5 C 0.186 3.814 6 H 0.102 0.898 7 N -0.728 5.728 8 C 0.531 3.469 9 O -0.517 6.517 10 C -0.125 4.125 11 S -0.141 6.141 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.881 5.881 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C -0.103 4.103 21 C -0.085 4.085 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.110 4.110 25 C -0.085 4.085 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.400 0.600 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.271 0.729 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.847 18.442 8.627 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 C -0.194 4.194 4 C -0.155 4.155 5 C 0.081 3.919 6 H 0.120 0.880 7 N -0.382 5.382 8 C 0.317 3.683 9 O -0.391 6.391 10 C -0.275 4.275 11 S 0.086 5.914 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.517 5.517 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 C -0.105 4.105 21 C -0.103 4.103 22 C -0.140 4.140 23 C -0.137 4.137 24 C -0.128 4.128 25 C -0.085 4.085 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.235 0.765 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.165 19.256 9.359 26.237 hybrid contribution -0.637 -1.038 -0.502 1.317 sum -15.802 18.219 8.858 25.692 Atomic orbital electron populations 1.21845 0.93532 1.02133 1.01939 1.20035 0.95801 0.94973 0.91525 1.21830 1.01497 0.94012 1.02014 1.22742 0.95878 0.99533 0.97313 1.20397 0.98748 0.85012 0.87714 0.88030 1.46064 1.10556 1.19896 1.61657 1.20316 0.82268 0.87068 0.78642 1.90705 1.40532 1.63000 1.44890 1.23291 1.04603 0.95827 1.03829 1.84771 1.03918 1.24314 1.78442 1.22322 0.99641 1.01769 1.43178 0.89407 1.24712 0.98836 0.93987 0.93761 1.69939 1.29284 1.11226 1.41288 0.86737 0.83525 0.79841 0.81758 1.19201 1.19942 1.15923 1.20857 0.96355 0.97373 0.95882 1.20812 0.99031 0.98162 0.92291 1.21102 0.97533 0.99454 0.95914 1.21031 0.96585 0.96967 0.99133 1.20506 1.00371 1.00073 0.91817 1.20379 0.96538 0.97537 0.94057 0.92406 0.92201 0.92327 0.92187 0.92013 0.92317 0.89578 0.90007 0.76538 0.88504 0.88505 0.91938 0.85777 0.85902 0.86096 0.86574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.31 37.16 0.31 -0.62 16 2 C -0.02 -0.19 0.89 -154.63 -0.14 -0.33 16 3 C -0.14 -1.03 8.48 37.16 0.31 -0.71 16 4 C -0.12 -0.99 5.78 -25.32 -0.15 -1.13 16 5 C 0.19 2.23 3.16 -68.05 -0.22 2.01 16 6 H 0.10 1.39 7.64 -51.93 -0.40 1.00 16 7 N -0.73 -9.39 5.11 -53.92 -0.28 -9.66 16 8 C 0.53 9.29 7.31 -10.99 -0.08 9.21 16 9 O -0.52 -10.89 15.00 5.55 0.08 -10.80 16 10 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 11 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 12 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 13 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 14 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 15 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 16 Si 0.86 21.82 27.74 -169.99 -4.71 17.11 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 20 C -0.10 -1.32 5.78 -104.21 -0.60 -1.92 16 21 C -0.08 -1.19 9.87 -39.53 -0.39 -1.58 16 22 C -0.12 -1.46 10.05 -39.63 -0.40 -1.86 16 23 C -0.12 -1.22 10.05 -39.62 -0.40 -1.62 16 24 C -0.11 -1.09 9.76 -39.53 -0.39 -1.48 16 25 C -0.08 -0.90 4.92 -104.21 -0.51 -1.41 16 26 H 0.06 0.36 7.91 -51.93 -0.41 -0.05 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.63 7.90 -51.93 -0.41 0.22 16 33 H 0.08 0.61 7.57 -51.93 -0.39 0.22 16 34 H 0.40 4.06 8.39 -40.82 -0.34 3.71 16 35 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 36 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 37 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 38 H 0.12 2.02 7.08 -52.48 -0.37 1.65 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.12 0.91 7.87 -52.48 -0.41 0.49 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -33.50 351.15 -9.16 -42.66 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.12 Total: 2.46 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -2.21 Total: -15.63 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.50 Total: -35.53 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.50 -9.16 -42.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127328398.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.871 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds