Wall clock time and date at job start Tue Mar 31 2020 08:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.26731 * 2 1 4 4 C 1.54348 * 110.30417 * 237.82421 * 2 1 3 5 5 C 1.54353 * 102.38995 * 214.72645 * 4 2 1 6 6 H 1.09002 * 110.38280 * 267.37593 * 5 4 2 7 7 N 1.46504 * 110.30340 * 145.26484 * 5 4 2 8 8 C 1.34771 * 119.99670 * 157.79437 * 7 5 4 9 9 O 1.21284 * 120.00353 * 0.02562 * 8 7 5 10 10 C 1.50703 * 119.99952 * 179.97438 * 8 7 5 11 11 S 1.80990 * 109.47384 * 180.02562 * 10 8 7 12 12 C 1.76199 * 100.00278 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99888 * 359.97438 * 12 11 10 14 14 C 1.38797 * 120.00452 * 179.97438 * 12 11 10 15 15 N 1.31633 * 120.00292 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99660 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 269.99524 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99704 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99697 * 16 14 12 20 20 C 1.51364 * 105.16984 * 26.34098 * 5 4 2 21 21 C 1.38502 * 130.39515 * 162.82076 * 20 5 4 22 22 C 1.38102 * 120.21996 * 179.97438 * 21 20 5 23 23 C 1.38249 * 119.93434 * 0.05938 * 22 21 20 24 24 C 1.38110 * 119.93302 * 359.97438 * 23 22 21 25 25 C 1.38211 * 109.76297 * 342.81779 * 20 5 4 26 26 H 1.08996 * 109.47196 * 299.37338 * 1 2 3 27 27 H 1.09002 * 109.46980 * 59.38242 * 1 2 3 28 28 H 1.09006 * 109.46968 * 179.37726 * 1 2 3 29 29 H 1.08995 * 109.47490 * 180.62377 * 3 2 1 30 30 H 1.09001 * 109.47590 * 300.62090 * 3 2 1 31 31 H 1.08998 * 109.46979 * 60.62233 * 3 2 1 32 32 H 1.09000 * 110.82415 * 96.50287 * 4 2 1 33 33 H 1.09001 * 110.81957 * 332.94765 * 4 2 1 34 34 H 0.96994 * 119.99668 * 337.79817 * 7 5 4 35 35 H 1.09001 * 109.47050 * 59.99941 * 10 8 7 36 36 H 1.08999 * 109.47014 * 300.00996 * 10 8 7 37 37 H 0.96997 * 119.99773 * 180.02562 * 15 14 12 38 38 H 1.08007 * 119.89112 * 359.97438 * 21 20 5 39 39 H 1.08000 * 120.03269 * 180.02562 * 22 21 20 40 40 H 1.08004 * 120.03226 * 180.02562 * 23 22 21 41 41 H 1.08005 * 119.88884 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0600 1.4352 0.0000 4 6 2.0656 -0.7709 -1.2252 5 6 3.3426 -1.4342 -0.6669 6 1 4.2101 -0.7994 -0.8473 7 7 3.5408 -2.7505 -1.2788 8 6 4.7684 -3.3063 -1.2987 9 8 5.7090 -2.7170 -0.8097 10 6 4.9723 -4.6606 -1.9276 11 16 6.7153 -5.1304 -1.7967 12 6 6.6683 -6.7041 -2.5877 13 1 5.7348 -7.0874 -2.9725 14 6 7.8309 -7.4513 -2.7163 15 7 7.7958 -8.6268 -3.3077 16 14 9.4454 -6.7887 -2.0502 17 1 10.1305 -6.0008 -3.1061 18 1 10.3123 -7.9212 -1.6366 19 1 9.1769 -5.9173 -0.8781 20 6 3.0968 -1.5778 0.8197 21 6 3.7340 -2.3670 1.7628 22 6 3.3325 -2.3326 3.0837 23 6 2.2903 -1.5090 3.4668 24 6 1.6531 -0.7218 2.5278 25 6 2.0553 -0.7538 1.2029 26 1 -0.3633 0.5040 0.8955 27 1 -0.3633 0.5234 -0.8844 28 1 -0.3633 -1.0277 -0.0112 29 1 3.1498 1.4202 -0.0112 30 1 1.6948 1.9575 -0.8843 31 1 1.7129 1.9507 0.8955 32 1 2.3083 -0.0863 -2.0380 33 1 1.3490 -1.5242 -1.5525 34 1 2.7886 -3.2218 -1.6696 35 1 4.6844 -4.6204 -2.9781 36 1 4.3578 -5.3975 -1.4105 37 1 8.6083 -9.1490 -3.3972 38 1 4.5477 -3.0114 1.4641 39 1 3.8318 -2.9490 3.8166 40 1 1.9753 -1.4806 4.4994 41 1 0.8387 -0.0789 2.8277 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127328398.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:23 Heat of formation + Delta-G solvation = -44.207835 kcal Electronic energy + Delta-G solvation = -22256.234148 eV Core-core repulsion = 19032.543349 eV Total energy + Delta-G solvation = -3223.690799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.87468 -40.21249 -37.60139 -35.64415 -34.69072 -32.71252 -30.98553 -30.70890 -29.14815 -28.11652 -27.86623 -24.78703 -23.65499 -22.41157 -21.55349 -20.25930 -19.85344 -18.02822 -17.67602 -17.15081 -16.98092 -16.39329 -16.08963 -15.98075 -15.88523 -15.14189 -14.89841 -14.79721 -14.57066 -14.37496 -14.11951 -13.81840 -13.55430 -13.36482 -13.21005 -13.03387 -12.92184 -12.72784 -12.63017 -12.44866 -12.17228 -11.91158 -11.85838 -11.59865 -11.45787 -11.18919 -11.00519 -10.55905 -10.20462 -9.75357 -9.53870 -9.01612 -8.53479 -6.24289 0.37476 0.45262 0.97279 1.29534 1.45070 1.53634 1.54343 2.20627 2.25004 2.69466 2.84454 2.84790 3.33492 3.47681 3.80097 3.96196 4.01507 4.07934 4.13832 4.20388 4.24490 4.36555 4.43219 4.48152 4.57742 4.66826 4.82325 4.89102 4.90204 5.00302 5.01734 5.08708 5.15604 5.24903 5.34133 5.40445 5.46450 5.57104 5.62177 5.68982 5.73507 6.08267 6.09514 6.43915 6.91745 7.17216 8.59132 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.024886 B = 0.003258 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.853952 B = 8592.058476 C = 9099.221083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.019 4.019 3 C -0.136 4.136 4 C -0.109 4.109 5 C 0.183 3.817 6 H 0.079 0.921 7 N -0.705 5.705 8 C 0.536 3.464 9 O -0.558 6.558 10 C -0.112 4.112 11 S -0.173 6.173 12 C -0.530 4.530 13 H 0.062 0.938 14 C 0.046 3.954 15 N -0.917 5.917 16 Si 0.914 3.086 17 H -0.261 1.261 18 H -0.258 1.258 19 H -0.238 1.238 20 C -0.125 4.125 21 C -0.114 4.114 22 C -0.135 4.135 23 C -0.116 4.116 24 C -0.109 4.109 25 C -0.082 4.082 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.416 0.584 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.277 0.723 38 H 0.089 0.911 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.151 20.654 9.248 29.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.020 4.020 3 C -0.193 4.193 4 C -0.146 4.146 5 C 0.078 3.922 6 H 0.097 0.903 7 N -0.358 5.358 8 C 0.322 3.678 9 O -0.436 6.436 10 C -0.263 4.263 11 S 0.053 5.947 12 C -0.677 4.677 13 H 0.080 0.920 14 C -0.159 4.159 15 N -0.555 5.555 16 Si 0.736 3.264 17 H -0.186 1.186 18 H -0.182 1.182 19 H -0.162 1.162 20 C -0.127 4.127 21 C -0.133 4.133 22 C -0.153 4.153 23 C -0.134 4.134 24 C -0.126 4.126 25 C -0.083 4.083 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.254 0.746 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.147 0.853 40 H 0.167 0.833 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.522 21.468 9.971 29.450 hybrid contribution -0.081 -1.671 -0.661 1.799 sum -17.603 19.796 9.310 28.079 Atomic orbital electron populations 1.21829 0.91712 1.02346 1.03202 1.20084 0.97087 0.94861 0.89945 1.21838 1.00413 0.93715 1.03306 1.22800 0.94035 0.99923 0.97873 1.20570 0.99850 0.83803 0.87930 0.90283 1.45850 1.09373 1.20257 1.60319 1.19977 0.83274 0.86272 0.78299 1.90693 1.42190 1.63812 1.46869 1.23274 1.00173 0.97326 1.05487 1.84699 1.09611 1.22268 1.78076 1.22466 0.98783 1.03407 1.43071 0.91995 1.25554 1.02079 0.94243 0.94027 1.70015 1.30595 1.12391 1.42506 0.85875 0.79776 0.79646 0.81121 1.18587 1.18239 1.16222 1.20958 0.97448 0.98314 0.95938 1.20735 0.99260 0.99337 0.93934 1.21266 0.98496 1.00350 0.95210 1.21374 0.95443 0.95834 1.00717 1.20896 1.00625 0.99764 0.91356 1.20723 0.95484 0.96755 0.95305 0.91543 0.90632 0.92634 0.93922 0.90177 0.91625 0.88031 0.88420 0.74624 0.86722 0.87228 0.91321 0.89281 0.85288 0.83285 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 8.31 71.98 0.60 -0.66 16 2 C -0.02 -0.26 0.89 -52.26 -0.05 -0.31 16 3 C -0.14 -1.66 8.48 71.98 0.61 -1.05 16 4 C -0.11 -1.56 5.78 31.51 0.18 -1.37 16 5 C 0.18 4.27 3.16 44.91 0.14 4.41 16 6 H 0.08 2.22 7.64 -2.39 -0.02 2.20 16 7 N -0.70 -17.72 5.11 -442.88 -2.26 -19.99 16 8 C 0.54 18.94 7.31 87.66 0.64 19.58 16 9 O -0.56 -24.28 15.00 -3.04 -0.05 -24.33 16 10 C -0.11 -4.30 6.16 71.24 0.44 -3.86 16 11 S -0.17 -8.87 18.55 -56.49 -1.05 -9.92 16 12 C -0.53 -31.20 10.04 67.95 0.68 -30.52 16 13 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 14 C 0.05 2.75 5.50 84.86 0.47 3.22 16 15 N -0.92 -56.31 13.97 21.65 0.30 -56.01 16 16 Si 0.91 45.51 27.74 68.60 1.90 47.41 16 17 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 18 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.24 -11.90 6.74 99.48 0.67 -11.23 16 20 C -0.13 -3.17 5.78 -19.60 -0.11 -3.28 16 21 C -0.11 -3.34 9.87 22.30 0.22 -3.12 16 22 C -0.14 -3.23 10.05 22.24 0.22 -3.01 16 23 C -0.12 -2.14 10.05 22.24 0.22 -1.91 16 24 C -0.11 -1.85 9.76 22.30 0.22 -1.64 16 25 C -0.08 -1.58 4.92 -19.60 -0.10 -1.68 16 26 H 0.07 0.54 7.91 -2.39 -0.02 0.52 16 27 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.58 8.13 -2.38 -0.02 0.56 16 29 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 1.18 7.90 -2.39 -0.02 1.16 16 33 H 0.10 1.11 7.57 -2.39 -0.02 1.10 16 34 H 0.42 7.72 8.39 -92.71 -0.78 6.94 16 35 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 36 H 0.11 3.94 8.14 -2.40 -0.02 3.93 16 37 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.09 3.17 7.08 -2.91 -0.02 3.15 16 39 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.15 1.63 7.87 -2.91 -0.02 1.61 16 Total: -1.00 -74.99 351.15 3.45 -71.54 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.21 Total: 16.49 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 4.39 Total: -25.20 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -1.96 Total: -76.00 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.05 Total: -24.33 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.41 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.05 Total: -9.92 kcal Total: -74.99 3.45 -71.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127328398.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.334 kcal (2) G-P(sol) polarization free energy of solvation -74.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds