Wall clock time and date at job start Tue Mar 31 2020 08:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.34395 * 2 1 4 4 C 1.54346 * 110.30390 * 122.12707 * 2 1 3 5 5 C 1.54347 * 102.57063 * 92.67731 * 4 2 1 6 6 H 1.09000 * 110.30389 * 145.17630 * 5 4 2 7 7 N 1.46504 * 110.30085 * 267.32576 * 5 4 2 8 8 C 1.34773 * 119.99760 * 204.99910 * 7 5 4 9 9 O 1.21278 * 120.00170 * 0.02562 * 8 7 5 10 10 C 1.50704 * 120.00147 * 179.97438 * 8 7 5 11 11 S 1.80991 * 109.47281 * 180.02562 * 10 8 7 12 12 C 1.76206 * 99.99975 * 179.97438 * 11 10 8 13 13 H 1.07997 * 119.99901 * 0.02562 * 12 11 10 14 14 C 1.38803 * 120.00026 * 179.97438 * 12 11 10 15 15 N 1.31628 * 119.99844 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 119.99979 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47020 * 89.99462 * 16 14 12 18 18 H 1.48500 * 109.47017 * 209.99620 * 16 14 12 19 19 H 1.48500 * 109.47022 * 329.99542 * 16 14 12 20 20 C 1.51370 * 105.17312 * 26.24711 * 5 4 2 21 21 C 1.38493 * 130.39471 * 162.81346 * 20 5 4 22 22 C 1.38098 * 120.21764 * 180.02562 * 21 20 5 23 23 C 1.38256 * 119.93662 * 359.97438 * 22 21 20 24 24 C 1.38105 * 119.93143 * 359.97438 * 23 22 21 25 25 C 1.38216 * 109.75579 * 342.81356 * 20 5 4 26 26 H 1.08995 * 109.47621 * 297.87211 * 1 2 3 27 27 H 1.09000 * 109.46859 * 57.87643 * 1 2 3 28 28 H 1.09008 * 109.46927 * 177.86969 * 1 2 3 29 29 H 1.09006 * 109.46799 * 182.12546 * 3 2 1 30 30 H 1.08999 * 109.47475 * 302.12405 * 3 2 1 31 31 H 1.08995 * 109.47562 * 62.12973 * 3 2 1 32 32 H 1.09002 * 110.82237 * 334.35106 * 4 2 1 33 33 H 1.09005 * 110.81964 * 210.99940 * 4 2 1 34 34 H 0.96999 * 120.00364 * 24.99877 * 7 5 4 35 35 H 1.09004 * 109.46859 * 300.00552 * 10 8 7 36 36 H 1.08996 * 109.46855 * 59.99957 * 10 8 7 37 37 H 0.96996 * 120.00152 * 180.02562 * 15 14 12 38 38 H 1.08005 * 119.88882 * 359.97438 * 21 20 5 39 39 H 1.08004 * 120.03484 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.03559 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.89005 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0619 1.4346 0.0000 4 6 2.0656 -0.7698 1.2259 5 6 2.2481 -2.1988 0.6718 6 1 3.1160 -2.6738 1.1292 7 7 1.0435 -2.9962 0.9154 8 6 1.1284 -4.3391 0.9916 9 8 2.2020 -4.8874 0.8591 10 6 -0.1107 -5.1594 1.2428 11 16 0.3275 -6.9148 1.2914 12 6 -1.2601 -7.6183 1.5907 13 1 -2.1251 -6.9786 1.6845 14 6 -1.3990 -8.9946 1.7048 15 7 -2.5849 -9.5200 1.9288 16 14 0.0972 -10.1010 1.5418 17 1 0.7123 -10.3017 2.8784 18 1 -0.3165 -11.4140 0.9850 19 1 1.0851 -9.4668 0.6324 20 6 2.4690 -2.0218 -0.8153 21 6 2.9908 -2.8949 -1.7552 22 6 3.0992 -2.5096 -3.0769 23 6 2.6852 -1.2486 -3.4642 24 6 2.1636 -0.3769 -2.5285 25 6 2.0551 -0.7612 -1.2023 26 1 -0.3634 0.4804 0.9084 27 1 -0.3633 0.5465 -0.8703 28 1 -0.3633 -1.0270 -0.0382 29 1 3.1512 1.4182 -0.0381 30 1 1.6759 1.9653 -0.8703 31 1 1.7378 1.9423 0.9084 32 1 1.3386 -0.7591 2.0381 33 1 3.0191 -0.3575 1.5560 34 1 0.1848 -2.5577 1.0218 35 1 -0.5517 -4.8687 2.1963 36 1 -0.8296 -4.9860 0.4422 37 1 -2.6819 -10.4818 2.0090 38 1 3.3148 -3.8800 -1.4534 39 1 3.5062 -3.1929 -3.8076 40 1 2.7696 -0.9454 -4.4973 41 1 1.8401 0.6078 -2.8318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127328628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:25 Heat of formation + Delta-G solvation = -22.534517 kcal Electronic energy + Delta-G solvation = -22391.079500 eV Core-core repulsion = 19168.328527 eV Total energy + Delta-G solvation = -3222.750973 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.01768 -38.84822 -36.81885 -34.31884 -32.43679 -31.73134 -30.14346 -29.45987 -28.19288 -27.59415 -25.61442 -23.95089 -22.81385 -21.29873 -20.39519 -19.46692 -17.90103 -16.79093 -16.54950 -15.70254 -15.42643 -15.22009 -14.95857 -14.83394 -14.45232 -13.97858 -13.89440 -13.66290 -13.31197 -13.21826 -12.90179 -12.79022 -12.49932 -12.28451 -12.17864 -11.93767 -11.74073 -11.35660 -11.26113 -11.24204 -11.00671 -10.78640 -10.67990 -10.56690 -9.85911 -9.57018 -9.04413 -8.98627 -8.86533 -8.70004 -8.49661 -6.91099 -6.28670 -4.00184 1.22162 1.33546 2.78377 2.97414 3.30656 3.34165 3.50622 3.60734 3.82926 4.11803 4.19806 4.33411 4.63515 4.71326 4.75407 4.83070 4.94987 4.96738 5.05370 5.10472 5.27793 5.28212 5.35215 5.36742 5.47267 5.52236 5.59240 5.66607 5.69496 5.76951 5.81433 5.89859 5.91846 5.97991 6.02272 6.07516 6.37792 6.47565 6.56418 6.60992 6.92832 7.62155 7.94485 8.42033 8.50075 9.17561 10.80663 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.022712 B = 0.003423 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.536891 B = 8178.163240 C = 8722.296919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.027 4.027 3 C -0.137 4.137 4 C -0.120 4.120 5 C 0.184 3.816 6 H 0.098 0.902 7 N -0.725 5.725 8 C 0.532 3.468 9 O -0.517 6.517 10 C -0.124 4.124 11 S -0.140 6.140 12 C -0.521 4.521 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.881 5.881 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C -0.106 4.106 21 C -0.084 4.084 22 C -0.124 4.124 23 C -0.116 4.116 24 C -0.111 4.111 25 C -0.079 4.079 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.398 0.602 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.271 0.729 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.940 23.506 -6.082 25.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.194 4.194 4 C -0.158 4.158 5 C 0.079 3.921 6 H 0.116 0.884 7 N -0.379 5.379 8 C 0.319 3.681 9 O -0.392 6.392 10 C -0.275 4.275 11 S 0.086 5.914 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.517 5.517 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 C -0.108 4.108 21 C -0.102 4.102 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.130 4.130 25 C -0.080 4.080 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.233 0.767 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.609 22.414 -6.248 25.573 hybrid contribution -1.333 0.091 0.025 1.336 sum 9.276 22.505 -6.223 25.125 Atomic orbital electron populations 1.21896 0.93206 1.02241 1.02217 1.20176 0.95757 0.94986 0.91770 1.21820 1.01113 0.94508 1.01939 1.22743 1.02669 0.93256 0.97108 1.20213 0.89584 0.91508 0.90745 0.88391 1.46115 1.10449 1.06322 1.75036 1.20303 0.90701 0.81780 0.75357 1.90679 1.29574 1.70875 1.48037 1.23285 0.98253 1.00561 1.05406 1.84762 1.15910 0.95821 1.94906 1.22325 0.92411 0.95515 1.56650 0.89419 1.24711 0.96194 0.97169 0.93224 1.69937 1.22341 1.12572 1.46890 0.86734 0.83713 0.80931 0.80472 1.19199 1.19947 1.15923 1.20829 0.99449 0.94416 0.96090 1.20856 0.97526 0.99509 0.92359 1.21095 1.00741 0.96513 0.95862 1.21043 0.99185 0.94095 0.99132 1.20525 1.00899 0.99648 0.91877 1.20519 0.98382 0.95138 0.93913 0.91867 0.92200 0.92325 0.92337 0.92456 0.92176 0.89518 0.89409 0.76650 0.88529 0.88573 0.91945 0.85560 0.85919 0.86092 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.43 37.16 0.31 -0.75 16 2 C -0.03 -0.22 0.90 -154.47 -0.14 -0.36 16 3 C -0.14 -0.91 8.32 37.16 0.31 -0.61 16 4 C -0.12 -1.02 5.68 -25.32 -0.14 -1.17 16 5 C 0.18 2.21 3.21 -68.04 -0.22 1.99 16 6 H 0.10 1.33 7.56 -51.93 -0.39 0.94 16 7 N -0.72 -9.51 5.02 -53.92 -0.27 -9.78 16 8 C 0.53 9.45 7.85 -10.98 -0.09 9.37 16 9 O -0.52 -10.93 15.51 5.56 0.09 -10.84 16 10 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 11 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 12 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 13 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 14 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 15 N -0.88 -26.68 13.97 55.49 0.78 -25.91 16 16 Si 0.86 21.86 27.74 -169.99 -4.72 17.15 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 20 C -0.11 -1.34 5.77 -104.21 -0.60 -1.94 16 21 C -0.08 -1.14 10.04 -39.54 -0.40 -1.54 16 22 C -0.12 -1.44 10.05 -39.63 -0.40 -1.83 16 23 C -0.12 -1.18 10.05 -39.62 -0.40 -1.58 16 24 C -0.11 -1.11 9.80 -39.53 -0.39 -1.50 16 25 C -0.08 -0.84 4.93 -104.05 -0.51 -1.35 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.50 6.40 -51.92 -0.33 0.17 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.65 7.83 -51.93 -0.41 0.24 16 33 H 0.09 0.66 7.91 -51.93 -0.41 0.25 16 34 H 0.40 4.25 6.90 -40.82 -0.28 3.97 16 35 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 36 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 37 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.13 1.91 8.06 -52.48 -0.42 1.48 16 39 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.92 8.02 -52.48 -0.42 0.50 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -33.50 350.56 -9.11 -42.60 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.05 Total: 2.59 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -2.22 Total: -15.53 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.50 Total: -35.69 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.50 -9.11 -42.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127328628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.068 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds