Wall clock time and date at job start Tue Mar 31 2020 08:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.34395 * 2 1 4 4 C 1.54346 * 110.30390 * 122.12707 * 2 1 3 5 5 C 1.54347 * 102.57063 * 92.67731 * 4 2 1 6 6 H 1.09000 * 110.30389 * 145.17630 * 5 4 2 7 7 N 1.46504 * 110.30085 * 267.32576 * 5 4 2 8 8 C 1.34773 * 119.99760 * 204.99910 * 7 5 4 9 9 O 1.21278 * 120.00170 * 0.02562 * 8 7 5 10 10 C 1.50704 * 120.00147 * 179.97438 * 8 7 5 11 11 S 1.80991 * 109.47281 * 180.02562 * 10 8 7 12 12 C 1.76206 * 99.99975 * 179.97438 * 11 10 8 13 13 H 1.07997 * 119.99901 * 0.02562 * 12 11 10 14 14 C 1.38803 * 120.00026 * 179.97438 * 12 11 10 15 15 N 1.31628 * 119.99844 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 119.99979 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47020 * 89.99462 * 16 14 12 18 18 H 1.48500 * 109.47017 * 209.99620 * 16 14 12 19 19 H 1.48500 * 109.47022 * 329.99542 * 16 14 12 20 20 C 1.51370 * 105.17312 * 26.24711 * 5 4 2 21 21 C 1.38493 * 130.39471 * 162.81346 * 20 5 4 22 22 C 1.38098 * 120.21764 * 180.02562 * 21 20 5 23 23 C 1.38256 * 119.93662 * 359.97438 * 22 21 20 24 24 C 1.38105 * 119.93143 * 359.97438 * 23 22 21 25 25 C 1.38216 * 109.75579 * 342.81356 * 20 5 4 26 26 H 1.08995 * 109.47621 * 297.87211 * 1 2 3 27 27 H 1.09000 * 109.46859 * 57.87643 * 1 2 3 28 28 H 1.09008 * 109.46927 * 177.86969 * 1 2 3 29 29 H 1.09006 * 109.46799 * 182.12546 * 3 2 1 30 30 H 1.08999 * 109.47475 * 302.12405 * 3 2 1 31 31 H 1.08995 * 109.47562 * 62.12973 * 3 2 1 32 32 H 1.09002 * 110.82237 * 334.35106 * 4 2 1 33 33 H 1.09005 * 110.81964 * 210.99940 * 4 2 1 34 34 H 0.96999 * 120.00364 * 24.99877 * 7 5 4 35 35 H 1.09004 * 109.46859 * 300.00552 * 10 8 7 36 36 H 1.08996 * 109.46855 * 59.99957 * 10 8 7 37 37 H 0.96996 * 120.00152 * 180.02562 * 15 14 12 38 38 H 1.08005 * 119.88882 * 359.97438 * 21 20 5 39 39 H 1.08004 * 120.03484 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.03559 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.89005 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0619 1.4346 0.0000 4 6 2.0656 -0.7698 1.2259 5 6 2.2481 -2.1988 0.6718 6 1 3.1160 -2.6738 1.1292 7 7 1.0435 -2.9962 0.9154 8 6 1.1284 -4.3391 0.9916 9 8 2.2020 -4.8874 0.8591 10 6 -0.1107 -5.1594 1.2428 11 16 0.3275 -6.9148 1.2914 12 6 -1.2601 -7.6183 1.5907 13 1 -2.1251 -6.9786 1.6845 14 6 -1.3990 -8.9946 1.7048 15 7 -2.5849 -9.5200 1.9288 16 14 0.0972 -10.1010 1.5418 17 1 0.7123 -10.3017 2.8784 18 1 -0.3165 -11.4140 0.9850 19 1 1.0851 -9.4668 0.6324 20 6 2.4690 -2.0218 -0.8153 21 6 2.9908 -2.8949 -1.7552 22 6 3.0992 -2.5096 -3.0769 23 6 2.6852 -1.2486 -3.4642 24 6 2.1636 -0.3769 -2.5285 25 6 2.0551 -0.7612 -1.2023 26 1 -0.3634 0.4804 0.9084 27 1 -0.3633 0.5465 -0.8703 28 1 -0.3633 -1.0270 -0.0382 29 1 3.1512 1.4182 -0.0381 30 1 1.6759 1.9653 -0.8703 31 1 1.7378 1.9423 0.9084 32 1 1.3386 -0.7591 2.0381 33 1 3.0191 -0.3575 1.5560 34 1 0.1848 -2.5577 1.0218 35 1 -0.5517 -4.8687 2.1963 36 1 -0.8296 -4.9860 0.4422 37 1 -2.6819 -10.4818 2.0090 38 1 3.3148 -3.8800 -1.4534 39 1 3.5062 -3.1929 -3.8076 40 1 2.7696 -0.9454 -4.4973 41 1 1.8401 0.6078 -2.8318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127328628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:25 Heat of formation + Delta-G solvation = -42.663081 kcal Electronic energy + Delta-G solvation = -22391.952340 eV Core-core repulsion = 19168.328527 eV Total energy + Delta-G solvation = -3223.623813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.92025 -40.16657 -37.65282 -35.40543 -34.68747 -32.80866 -30.98724 -30.70797 -29.17245 -28.12864 -27.86191 -24.78551 -23.64185 -22.40709 -21.56420 -20.25386 -19.87139 -18.00812 -17.84902 -17.12645 -16.78846 -16.36508 -16.19762 -15.95295 -15.84602 -15.07845 -14.87193 -14.79916 -14.57328 -14.52728 -14.16149 -13.67251 -13.50358 -13.36300 -13.19844 -13.02870 -12.94111 -12.78636 -12.63527 -12.43756 -12.13803 -11.92344 -11.86503 -11.45134 -11.43780 -11.18601 -11.03700 -10.55879 -10.21723 -9.77050 -9.56064 -9.01331 -8.53141 -6.23957 0.34220 0.45862 0.97824 1.29849 1.45426 1.54054 1.54820 2.20966 2.25278 2.69024 2.85113 2.89223 3.34056 3.45815 3.79999 3.96234 3.99275 4.11160 4.15170 4.19918 4.24486 4.34105 4.42585 4.53804 4.60395 4.66071 4.82316 4.86109 4.95355 5.00444 5.03020 5.08459 5.16100 5.25673 5.30928 5.40033 5.50480 5.56891 5.60780 5.69273 5.73464 6.08622 6.09772 6.42980 6.92026 7.16526 8.59438 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.022712 B = 0.003423 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.536891 B = 8178.163240 C = 8722.296919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.022 4.022 3 C -0.133 4.133 4 C -0.112 4.112 5 C 0.180 3.820 6 H 0.075 0.925 7 N -0.701 5.701 8 C 0.536 3.464 9 O -0.557 6.557 10 C -0.112 4.112 11 S -0.172 6.172 12 C -0.530 4.530 13 H 0.062 0.938 14 C 0.047 3.953 15 N -0.917 5.917 16 Si 0.914 3.086 17 H -0.261 1.261 18 H -0.258 1.258 19 H -0.238 1.238 20 C -0.129 4.129 21 C -0.113 4.113 22 C -0.136 4.136 23 C -0.114 4.114 24 C -0.113 4.113 25 C -0.077 4.077 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.413 0.587 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.277 0.723 38 H 0.096 0.904 39 H 0.132 0.868 40 H 0.149 0.851 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.166 26.361 -6.516 28.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 C -0.190 4.190 4 C -0.149 4.149 5 C 0.076 3.924 6 H 0.093 0.907 7 N -0.355 5.355 8 C 0.322 3.678 9 O -0.435 6.435 10 C -0.262 4.262 11 S 0.054 5.946 12 C -0.677 4.677 13 H 0.080 0.920 14 C -0.159 4.159 15 N -0.555 5.555 16 Si 0.736 3.264 17 H -0.186 1.186 18 H -0.182 1.182 19 H -0.162 1.162 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.154 4.154 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.078 4.078 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.251 0.749 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.150 0.850 40 H 0.167 0.833 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.811 25.317 -6.682 28.328 hybrid contribution -1.428 -0.631 0.113 1.566 sum 9.382 24.685 -6.569 27.213 Atomic orbital electron populations 1.21924 0.92472 1.01730 1.03507 1.20212 0.96213 0.95675 0.90153 1.21803 1.00889 0.93188 1.03166 1.22791 1.03993 0.90422 0.97713 1.20396 0.87980 0.93043 0.91011 0.90655 1.45913 1.11909 1.04698 1.72991 1.19992 0.89307 0.83139 0.75407 1.90674 1.30619 1.71925 1.50251 1.23271 0.99534 0.96467 1.06975 1.84693 1.14126 1.00789 1.94975 1.22465 0.93246 0.95730 1.56300 0.91999 1.25552 0.98828 0.98582 0.92931 1.70011 1.24174 1.13377 1.47905 0.85873 0.80310 0.79583 0.80646 1.18570 1.18245 1.16226 1.20915 1.00621 0.95473 0.96048 1.20837 0.99531 0.98842 0.93942 1.21279 1.01149 0.97742 0.95209 1.21395 0.97944 0.93192 1.00671 1.20904 0.99927 1.00702 0.91495 1.20852 0.97407 0.94384 0.95107 0.89979 0.91681 0.93625 0.92663 0.91630 0.90652 0.87850 0.88124 0.74890 0.86701 0.87354 0.91324 0.88610 0.85016 0.83340 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.43 71.98 0.61 -1.05 16 2 C -0.02 -0.30 0.90 -52.16 -0.05 -0.35 16 3 C -0.13 -1.27 8.32 71.98 0.60 -0.67 16 4 C -0.11 -1.62 5.68 31.51 0.18 -1.45 16 5 C 0.18 4.22 3.21 44.91 0.14 4.37 16 6 H 0.08 2.12 7.56 -2.39 -0.02 2.10 16 7 N -0.70 -17.82 5.02 -442.89 -2.23 -20.05 16 8 C 0.54 19.06 7.85 87.66 0.69 19.75 16 9 O -0.56 -24.23 15.51 -3.02 -0.05 -24.27 16 10 C -0.11 -4.32 6.16 71.24 0.44 -3.88 16 11 S -0.17 -8.85 18.55 -56.49 -1.05 -9.89 16 12 C -0.53 -31.20 10.04 67.96 0.68 -30.52 16 13 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 14 C 0.05 2.76 5.50 84.86 0.47 3.22 16 15 N -0.92 -56.22 13.97 21.65 0.30 -55.91 16 16 Si 0.91 45.47 27.74 68.60 1.90 47.37 16 17 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 20 C -0.13 -3.23 5.77 -19.60 -0.11 -3.34 16 21 C -0.11 -3.20 10.04 22.30 0.22 -2.97 16 22 C -0.14 -3.13 10.05 22.24 0.22 -2.91 16 23 C -0.11 -2.08 10.05 22.24 0.22 -1.86 16 24 C -0.11 -1.93 9.80 22.30 0.22 -1.71 16 25 C -0.08 -1.47 4.93 -19.49 -0.10 -1.57 16 26 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.04 0.66 6.40 -2.38 -0.02 0.64 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.06 0.54 8.11 -2.39 -0.02 0.52 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.10 1.18 7.83 -2.39 -0.02 1.17 16 33 H 0.10 1.25 7.91 -2.38 -0.02 1.23 16 34 H 0.41 8.05 6.90 -92.71 -0.64 7.41 16 35 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 36 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 37 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 38 H 0.10 3.20 8.06 -2.91 -0.02 3.18 16 39 H 0.13 2.63 8.06 -2.91 -0.02 2.60 16 40 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 41 H 0.14 1.67 8.02 -2.91 -0.02 1.65 16 Total: -1.00 -74.41 350.56 3.67 -70.74 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.35 Total: 16.96 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 4.44 Total: -24.94 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -1.92 Total: -75.96 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.37 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.89 kcal Total: -74.41 3.67 -70.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127328628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.074 kcal (2) G-P(sol) polarization free energy of solvation -74.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds