Wall clock time and date at job start Tue Mar 31 2020 08:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47039 * 2 1 4 4 H 1.09004 * 109.46800 * 185.18356 * 3 2 1 5 5 C 1.50702 * 109.47149 * 305.18100 * 3 2 1 6 6 H 1.07997 * 119.99842 * 120.00155 * 5 3 2 7 7 C 1.37874 * 119.99982 * 299.99942 * 5 3 2 8 8 N 1.31516 * 120.00455 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99746 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46864 * 90.00434 * 9 7 5 11 11 H 1.48500 * 109.47202 * 210.00118 * 9 7 5 12 12 H 1.48496 * 109.47419 * 330.00432 * 9 7 5 13 13 N 1.46902 * 109.47142 * 65.18501 * 3 2 1 14 14 C 1.46893 * 111.00240 * 86.62593 * 13 3 2 15 15 C 1.50704 * 109.47309 * 83.60676 * 14 13 3 16 16 C 1.38262 * 119.97738 * 259.42464 * 15 14 13 17 17 C 1.38175 * 120.02868 * 180.27266 * 16 15 14 18 18 C 1.38486 * 119.97051 * 359.47220 * 17 16 15 19 19 F 1.35098 * 120.02374 * 180.27276 * 18 17 16 20 20 C 1.38441 * 119.94792 * 0.54913 * 18 17 16 21 21 C 1.38224 * 119.97476 * 359.69992 * 20 18 17 22 22 C 1.50695 * 119.98755 * 180.02562 * 21 20 18 23 23 F 1.39903 * 109.47185 * 1.62138 * 22 21 20 24 24 F 1.39904 * 109.47167 * 121.61666 * 22 21 20 25 25 F 1.39897 * 109.47414 * 241.61975 * 22 21 20 26 26 H 1.08997 * 109.47051 * 63.20330 * 1 2 3 27 27 H 1.09002 * 109.46887 * 183.20041 * 1 2 3 28 28 H 1.09001 * 109.46900 * 303.19653 * 1 2 3 29 29 H 1.09000 * 109.47123 * 240.00025 * 2 1 3 30 30 H 1.08995 * 109.47504 * 120.00276 * 2 1 3 31 31 H 0.96994 * 120.00232 * 179.97438 * 8 7 5 32 32 H 1.00902 * 110.99836 * 322.67244 * 13 3 2 33 33 H 1.09008 * 109.47157 * 323.60930 * 14 13 3 34 34 H 1.08991 * 109.47210 * 203.61037 * 14 13 3 35 35 H 1.08007 * 119.98840 * 359.97438 * 16 15 14 36 36 H 1.07992 * 120.01377 * 179.69871 * 17 16 15 37 37 H 1.07996 * 120.01013 * 179.73054 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0929 5 6 1.4356 2.1890 -1.1613 6 1 0.8265 3.0629 -0.9833 7 6 1.6603 1.7563 -2.4509 8 7 2.4016 0.6918 -2.6678 9 14 0.9105 2.6812 -3.8904 10 1 1.8516 3.7362 -4.3450 11 1 0.6510 1.7354 -5.0054 12 1 -0.3670 3.3074 -3.4650 13 7 1.6551 2.0979 1.2571 14 6 2.6527 1.8507 2.3066 15 6 3.7796 2.8423 2.1723 16 6 4.9647 2.4639 1.5691 17 6 6.0005 3.3706 1.4504 18 6 5.8474 4.6621 1.9263 19 9 6.8575 5.5511 1.8059 20 6 4.6605 5.0398 2.5306 21 6 3.6275 4.1295 2.6527 22 6 2.3352 4.5405 3.3099 23 9 2.4069 5.8884 3.6774 24 9 1.2771 4.3574 2.4131 25 9 2.1216 3.7572 4.4492 26 1 -0.3633 0.4633 -0.9173 27 1 -0.3633 -1.0261 0.0574 28 1 -0.3633 0.5627 0.8600 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.5593 0.3872 -3.5750 32 1 0.7374 1.8011 1.5535 33 1 3.0451 0.8388 2.2039 34 1 2.1858 1.9616 3.2852 35 1 5.0826 1.4577 1.1947 36 1 6.9279 3.0733 0.9836 37 1 4.5415 6.0454 2.9059 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129448255.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:25 Heat of formation + Delta-G solvation = -168.709956 kcal Electronic energy + Delta-G solvation = -26191.104331 eV Core-core repulsion = 21853.944799 eV Total energy + Delta-G solvation = -4337.159532 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.86348 -48.86786 -47.47263 -47.12101 -39.34475 -36.49765 -33.10755 -31.93817 -31.29438 -29.60216 -26.75741 -25.95671 -24.27801 -23.25510 -22.39581 -21.25468 -19.28209 -18.38387 -18.25054 -18.08738 -16.44464 -16.15165 -16.01421 -15.59451 -15.50426 -14.96697 -14.79572 -14.26854 -14.08987 -13.86645 -13.72763 -13.67022 -13.34823 -13.25666 -13.21123 -12.77617 -12.62778 -12.39768 -12.20901 -11.97087 -11.73648 -11.31535 -10.99696 -10.89554 -10.63936 -10.54069 -10.03948 -9.84343 -9.60078 -9.23572 -9.00450 -8.55457 -8.34959 -7.35156 -5.99451 -3.99760 0.94067 1.18599 2.90812 3.32144 3.38920 3.42016 3.44227 3.89329 4.20048 4.43588 4.44541 4.73932 4.82213 4.91061 4.95569 5.22935 5.33057 5.49081 5.60546 5.68406 5.93952 5.98150 6.04065 6.20172 6.29735 6.33739 6.47231 6.52737 6.79890 6.84862 7.19420 7.22060 7.45357 7.65499 7.87256 8.22804 8.46041 8.56572 9.06106 9.63924 11.07719 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.013524 B = 0.005636 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.901217 B = 4967.138822 C = 5633.715561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.146 4.146 3 C 0.214 3.786 4 H 0.035 0.965 5 C -0.484 4.484 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.672 5.672 14 C 0.073 3.927 15 C -0.012 4.012 16 C -0.079 4.079 17 C -0.121 4.121 18 C 0.085 3.915 19 F -0.139 7.139 20 C -0.114 4.114 21 C -0.141 4.141 22 C 0.510 3.490 23 F -0.187 7.187 24 F -0.144 7.144 25 F -0.182 7.182 26 H 0.065 0.935 27 H 0.022 0.978 28 H 0.031 0.969 29 H 0.093 0.907 30 H 0.010 0.990 31 H 0.258 0.742 32 H 0.335 0.665 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.343 3.657 11.845 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.106 3.894 4 H 0.053 0.947 5 C -0.523 4.523 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.304 5.304 14 C -0.057 4.057 15 C -0.013 4.013 16 C -0.098 4.098 17 C -0.139 4.139 18 C 0.066 3.934 19 F -0.118 7.118 20 C -0.133 4.133 21 C -0.143 4.143 22 C 0.455 3.545 23 F -0.168 7.168 24 F -0.124 7.124 25 F -0.164 7.164 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.112 0.888 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.155 0.845 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.643 4.198 11.524 13.114 hybrid contribution -0.498 -0.228 -0.724 0.907 sum 4.145 3.970 10.801 12.231 Atomic orbital electron populations 1.21557 0.97611 0.97892 1.01439 1.22125 0.95129 1.01097 1.00241 1.19300 0.96081 0.88499 0.85482 0.94673 1.21051 1.30358 1.11384 0.89540 0.91994 1.24878 0.95597 0.95138 0.98658 1.69863 1.39272 1.23984 1.20628 0.86612 0.79705 0.79568 0.82224 1.20888 1.21499 1.19929 1.60770 1.03079 1.63286 1.03248 1.21052 0.92695 0.94996 0.96929 1.19830 0.95421 0.93075 0.92991 1.20995 0.91443 1.00503 0.96827 1.21308 1.00890 0.91840 0.99895 1.17388 0.85697 0.87800 1.02536 1.91496 1.58426 1.67532 1.94303 1.20802 0.91766 1.00575 1.00156 1.19546 0.93304 0.95798 1.05635 1.18142 0.85804 0.73948 0.76562 1.93129 1.96608 1.34923 1.92171 1.93386 1.58018 1.94513 1.66528 1.93146 1.95711 1.74631 1.52894 0.91604 0.95915 0.95010 0.88838 0.97127 0.93182 0.84521 0.93291 0.90800 0.83938 0.84163 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.39 37.16 0.35 -2.24 16 2 C -0.15 -3.20 5.49 -26.73 -0.15 -3.35 16 3 C 0.21 4.89 2.13 -68.86 -0.15 4.75 16 4 H 0.04 0.87 6.76 -51.93 -0.35 0.52 16 5 C -0.48 -12.63 7.41 -34.44 -0.26 -12.89 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.53 5.26 -17.82 -0.09 1.44 16 8 N -0.90 -24.45 11.38 55.43 0.63 -23.82 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.67 -13.13 4.40 -109.22 -0.48 -13.61 16 14 C 0.07 1.20 5.09 -4.98 -0.03 1.17 16 15 C -0.01 -0.19 5.17 -104.62 -0.54 -0.73 16 16 C -0.08 -1.18 8.87 -39.60 -0.35 -1.53 16 17 C -0.12 -1.64 10.03 -39.51 -0.40 -2.04 16 18 C 0.09 1.20 7.30 -39.42 -0.29 0.91 16 19 F -0.14 -1.93 17.27 2.25 0.04 -1.89 16 20 C -0.11 -1.62 9.41 -39.51 -0.37 -1.99 16 21 C -0.14 -2.18 5.37 -104.63 -0.56 -2.74 16 22 C 0.51 7.79 2.85 36.00 0.10 7.89 16 23 F -0.19 -2.69 15.97 2.25 0.04 -2.66 16 24 F -0.14 -2.52 14.92 2.25 0.03 -2.49 16 25 F -0.18 -2.63 15.48 2.25 0.03 -2.60 16 26 H 0.06 1.49 7.16 -51.93 -0.37 1.11 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.03 0.58 6.33 -51.93 -0.33 0.25 16 29 H 0.09 2.33 6.23 -51.93 -0.32 2.01 16 30 H 0.01 0.20 7.48 -51.93 -0.39 -0.19 16 31 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.33 6.33 6.59 -39.29 -0.26 6.07 16 33 H 0.05 0.78 7.07 -51.92 -0.37 0.42 16 34 H 0.07 1.10 6.06 -51.93 -0.31 0.78 16 35 H 0.14 2.01 7.93 -52.48 -0.42 1.59 16 36 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.14 1.79 7.16 -52.49 -0.38 1.41 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -26.95 315.13 -6.59 -33.54 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -3.89 Total: 3.97 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.73 Total: -11.35 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.15 Total: -37.43 kcal Atomic # 9 Polarization: -9.77 SS G_CDS: 0.14 Total: -9.63 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.95 -6.59 -33.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129448255.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.169 kcal (2) G-P(sol) polarization free energy of solvation -26.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds