Wall clock time and date at job start Tue Mar 31 2020 08:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47039 * 2 1 4 4 H 1.09004 * 109.46800 * 185.18356 * 3 2 1 5 5 C 1.50702 * 109.47149 * 305.18100 * 3 2 1 6 6 H 1.07997 * 119.99842 * 120.00155 * 5 3 2 7 7 C 1.37874 * 119.99982 * 299.99942 * 5 3 2 8 8 N 1.31516 * 120.00455 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99746 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46864 * 90.00434 * 9 7 5 11 11 H 1.48500 * 109.47202 * 210.00118 * 9 7 5 12 12 H 1.48496 * 109.47419 * 330.00432 * 9 7 5 13 13 N 1.46902 * 109.47142 * 65.18501 * 3 2 1 14 14 C 1.46893 * 111.00240 * 86.62593 * 13 3 2 15 15 C 1.50704 * 109.47309 * 83.60676 * 14 13 3 16 16 C 1.38262 * 119.97738 * 259.42464 * 15 14 13 17 17 C 1.38175 * 120.02868 * 180.27266 * 16 15 14 18 18 C 1.38486 * 119.97051 * 359.47220 * 17 16 15 19 19 F 1.35098 * 120.02374 * 180.27276 * 18 17 16 20 20 C 1.38441 * 119.94792 * 0.54913 * 18 17 16 21 21 C 1.38224 * 119.97476 * 359.69992 * 20 18 17 22 22 C 1.50695 * 119.98755 * 180.02562 * 21 20 18 23 23 F 1.39903 * 109.47185 * 1.62138 * 22 21 20 24 24 F 1.39904 * 109.47167 * 121.61666 * 22 21 20 25 25 F 1.39897 * 109.47414 * 241.61975 * 22 21 20 26 26 H 1.08997 * 109.47051 * 63.20330 * 1 2 3 27 27 H 1.09002 * 109.46887 * 183.20041 * 1 2 3 28 28 H 1.09001 * 109.46900 * 303.19653 * 1 2 3 29 29 H 1.09000 * 109.47123 * 240.00025 * 2 1 3 30 30 H 1.08995 * 109.47504 * 120.00276 * 2 1 3 31 31 H 0.96994 * 120.00232 * 179.97438 * 8 7 5 32 32 H 1.00902 * 110.99836 * 322.67244 * 13 3 2 33 33 H 1.09008 * 109.47157 * 323.60930 * 14 13 3 34 34 H 1.08991 * 109.47210 * 203.61037 * 14 13 3 35 35 H 1.08007 * 119.98840 * 359.97438 * 16 15 14 36 36 H 1.07992 * 120.01377 * 179.69871 * 17 16 15 37 37 H 1.07996 * 120.01013 * 179.73054 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0929 5 6 1.4356 2.1890 -1.1613 6 1 0.8265 3.0629 -0.9833 7 6 1.6603 1.7563 -2.4509 8 7 2.4016 0.6918 -2.6678 9 14 0.9105 2.6812 -3.8904 10 1 1.8516 3.7362 -4.3450 11 1 0.6510 1.7354 -5.0054 12 1 -0.3670 3.3074 -3.4650 13 7 1.6551 2.0979 1.2571 14 6 2.6527 1.8507 2.3066 15 6 3.7796 2.8423 2.1723 16 6 4.9647 2.4639 1.5691 17 6 6.0005 3.3706 1.4504 18 6 5.8474 4.6621 1.9263 19 9 6.8575 5.5511 1.8059 20 6 4.6605 5.0398 2.5306 21 6 3.6275 4.1295 2.6527 22 6 2.3352 4.5405 3.3099 23 9 2.4069 5.8884 3.6774 24 9 1.2771 4.3574 2.4131 25 9 2.1216 3.7572 4.4492 26 1 -0.3633 0.4633 -0.9173 27 1 -0.3633 -1.0261 0.0574 28 1 -0.3633 0.5627 0.8600 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.5593 0.3872 -3.5750 32 1 0.7374 1.8011 1.5535 33 1 3.0451 0.8388 2.2039 34 1 2.1858 1.9616 3.2852 35 1 5.0826 1.4577 1.1947 36 1 6.9279 3.0733 0.9836 37 1 4.5415 6.0454 2.9059 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129448255.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:25 Heat of formation + Delta-G solvation = -181.606918 kcal Electronic energy + Delta-G solvation = -26191.663586 eV Core-core repulsion = 21853.944799 eV Total energy + Delta-G solvation = -4337.718786 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.06897 -49.97338 -48.64190 -48.38873 -40.52637 -38.12367 -34.76052 -33.19648 -32.88721 -31.02597 -28.47661 -27.23330 -25.80895 -24.91104 -23.56957 -22.51876 -20.97502 -19.55465 -19.45609 -19.31217 -18.21456 -17.37914 -17.16174 -16.90052 -16.71760 -16.58598 -16.43089 -15.49983 -15.37343 -15.33255 -14.99364 -14.84473 -14.62475 -14.58852 -14.45174 -14.33210 -14.28000 -13.82275 -13.56549 -13.33539 -13.20648 -12.81238 -12.68407 -12.45242 -12.38986 -12.09140 -11.77611 -11.62483 -11.34681 -10.90816 -10.39560 -10.31766 -9.72667 -8.92853 -8.01476 -6.06451 -0.20239 0.03834 1.41645 1.44980 1.52988 1.71456 2.27474 2.48484 2.71475 3.02922 3.28319 3.30267 3.50733 3.63611 3.77166 3.85274 3.98686 4.17757 4.42998 4.46483 4.60615 4.64537 4.74755 4.82008 4.85928 4.86999 5.06148 5.16886 5.29827 5.43846 5.49526 5.68556 5.74037 5.81561 5.90886 6.38913 6.73034 6.87334 7.05327 7.60393 9.03431 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.013524 B = 0.005636 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.901217 B = 4967.138822 C = 5633.715561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.140 4.140 3 C 0.223 3.777 4 H 0.015 0.985 5 C -0.492 4.492 6 H 0.046 0.954 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.937 3.063 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.676 5.676 14 C 0.076 3.924 15 C -0.029 4.029 16 C -0.089 4.089 17 C -0.116 4.116 18 C 0.082 3.918 19 F -0.137 7.137 20 C -0.114 4.114 21 C -0.151 4.151 22 C 0.513 3.487 23 F -0.181 7.181 24 F -0.159 7.159 25 F -0.177 7.177 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.257 0.743 32 H 0.338 0.662 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.146 0.854 36 H 0.165 0.835 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 3.968 12.625 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.180 4.180 3 C 0.114 3.886 4 H 0.033 0.967 5 C -0.531 4.531 6 H 0.064 0.936 7 C -0.179 4.179 8 N -0.557 5.557 9 Si 0.765 3.235 10 H -0.210 1.210 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.308 5.308 14 C -0.053 4.053 15 C -0.031 4.031 16 C -0.107 4.107 17 C -0.134 4.134 18 C 0.063 3.937 19 F -0.115 7.115 20 C -0.132 4.132 21 C -0.153 4.153 22 C 0.459 3.541 23 F -0.163 7.163 24 F -0.140 7.140 25 F -0.158 7.158 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.158 0.842 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.164 0.836 36 H 0.182 0.818 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.873 4.516 12.319 13.996 hybrid contribution -0.526 -0.288 -0.906 1.087 sum 4.347 4.228 11.413 12.924 Atomic orbital electron populations 1.21458 0.96384 0.99164 1.00776 1.21980 0.96178 1.00196 0.99642 1.19017 0.94490 0.88907 0.86144 0.96707 1.21267 1.29893 1.10978 0.90936 0.93590 1.25417 0.96144 0.95836 1.00526 1.69967 1.40179 1.24848 1.20744 0.85872 0.78973 0.78556 0.80090 1.21024 1.21243 1.19835 1.60604 1.04001 1.63082 1.03112 1.21083 0.92236 0.95490 0.96503 1.19893 0.95745 0.93387 0.94050 1.21122 0.91590 1.01076 0.96925 1.21558 1.01440 0.91372 0.99037 1.17474 0.85734 0.88029 1.02459 1.91505 1.58281 1.67463 1.94269 1.20991 0.91445 1.01111 0.99687 1.19606 0.93643 0.95919 1.06168 1.18100 0.85335 0.74222 0.76481 1.93136 1.96547 1.34506 1.92085 1.93353 1.58814 1.94654 1.67213 1.93152 1.95669 1.74509 1.52498 0.94382 0.93971 0.93182 0.91976 0.95047 0.93397 0.84159 0.92819 0.89224 0.83580 0.81772 0.82169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.75 9.39 71.98 0.68 -4.07 16 2 C -0.14 -6.05 5.49 30.59 0.17 -5.88 16 3 C 0.22 10.13 2.13 44.17 0.09 10.23 16 4 H 0.02 0.74 6.76 -2.39 -0.02 0.73 16 5 C -0.49 -25.73 7.41 25.60 0.19 -25.54 16 6 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 7 C 0.02 1.01 5.26 84.65 0.45 1.45 16 8 N -0.92 -50.27 11.38 21.45 0.24 -50.03 16 9 Si 0.94 43.47 29.54 68.60 2.03 45.49 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.68 -25.83 4.40 -499.46 -2.20 -28.03 16 14 C 0.08 2.40 5.09 85.56 0.44 2.83 16 15 C -0.03 -0.91 5.17 -19.86 -0.10 -1.01 16 16 C -0.09 -2.54 8.87 22.26 0.20 -2.34 16 17 C -0.12 -2.94 10.03 22.31 0.22 -2.72 16 18 C 0.08 2.17 7.30 22.38 0.16 2.34 16 19 F -0.14 -3.52 17.27 44.97 0.78 -2.74 16 20 C -0.11 -3.03 9.41 22.31 0.21 -2.82 16 21 C -0.15 -4.48 5.37 -19.87 -0.11 -4.59 16 22 C 0.51 14.99 2.85 71.23 0.20 15.20 16 23 F -0.18 -4.94 15.97 44.97 0.72 -4.22 16 24 F -0.16 -5.45 14.92 44.97 0.67 -4.78 16 25 F -0.18 -4.82 15.48 44.97 0.70 -4.12 16 26 H 0.04 1.69 7.16 -2.39 -0.02 1.67 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.76 6.33 -2.39 -0.02 1.75 16 29 H 0.06 3.10 6.23 -2.39 -0.01 3.08 16 30 H 0.03 1.20 7.48 -2.39 -0.02 1.18 16 31 H 0.26 13.67 8.31 -92.71 -0.77 12.89 16 32 H 0.34 12.34 6.59 -89.69 -0.59 11.75 16 33 H 0.05 1.64 7.07 -2.38 -0.02 1.62 16 34 H 0.09 2.51 6.06 -2.39 -0.01 2.49 16 35 H 0.15 4.01 7.93 -2.91 -0.02 3.98 16 36 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.16 3.65 7.16 -2.91 -0.02 3.63 16 Total: -1.00 -56.29 315.13 6.27 -50.02 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.54 Total: 15.34 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 2.80 Total: -16.94 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -1.95 Total: -78.06 kcal Atomic # 9 Polarization: -18.73 SS G_CDS: 2.86 Total: -15.86 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -56.29 6.27 -50.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129448255.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.587 kcal (2) G-P(sol) polarization free energy of solvation -56.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds