Wall clock time and date at job start Tue Mar 31 2020 08:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 H 1.08999 * 110.88620 * 51.12059 * 3 2 1 5 5 C 1.55153 * 111.00228 * 175.00107 * 3 2 1 6 6 C 1.54326 * 102.94199 * 153.61386 * 5 3 2 7 7 N 1.47018 * 107.27078 * 337.80662 * 6 5 3 8 8 C 1.34773 * 125.65367 * 178.90618 * 7 6 5 9 9 O 1.21545 * 120.00865 * 175.01383 * 8 7 6 10 10 C 1.47869 * 119.99308 * 355.28976 * 8 7 6 11 11 C 1.39678 * 120.09723 * 187.73290 * 10 8 7 12 12 C 1.38036 * 120.03692 * 179.97438 * 11 10 8 13 13 C 1.38179 * 120.24549 * 359.97438 * 12 11 10 14 14 C 1.39184 * 120.20033 * 0.02562 * 13 12 11 15 15 S 1.76204 * 120.01723 * 180.02562 * 14 13 12 16 16 C 1.76200 * 99.99661 * 274.98242 * 15 14 13 17 17 H 1.07998 * 120.00379 * 355.00643 * 16 15 14 18 18 C 1.38733 * 119.99865 * 174.99760 * 16 15 14 19 19 N 1.31626 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00293 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46993 * 60.00033 * 20 18 16 22 22 H 1.48494 * 109.47374 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47251 * 300.00320 * 20 18 16 24 24 C 1.38874 * 119.95666 * 359.74253 * 14 13 12 25 25 C 1.47428 * 108.70145 * 359.16610 * 7 6 5 26 26 H 1.08992 * 109.47340 * 60.00052 * 1 2 3 27 27 H 1.09004 * 109.47023 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46983 * 300.00140 * 1 2 3 29 29 H 1.09000 * 109.46983 * 239.99860 * 2 1 3 30 30 H 1.09008 * 109.47023 * 119.99783 * 2 1 3 31 31 H 1.08995 * 110.72589 * 35.24767 * 5 3 2 32 32 H 1.09010 * 110.87197 * 272.04561 * 5 3 2 33 33 H 1.08994 * 109.88411 * 218.38763 * 6 5 3 34 34 H 1.09003 * 110.01323 * 97.29160 * 6 5 3 35 35 H 1.07997 * 119.98331 * 359.95354 * 11 10 8 36 36 H 1.08002 * 119.87803 * 180.02562 * 12 11 10 37 37 H 1.08000 * 119.89751 * 179.97438 * 13 12 11 38 38 H 0.97009 * 119.99691 * 179.97438 * 19 18 16 39 39 H 1.08003 * 120.11713 * 180.28024 * 24 14 13 40 40 H 1.08999 * 110.36462 * 142.74124 * 25 7 6 41 41 H 1.08997 * 110.36609 * 265.06363 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5669 2.0219 0.7928 5 6 3.5858 1.4858 0.1262 6 6 3.9508 2.8223 -0.5536 7 7 2.8409 3.1725 -1.4519 8 6 2.7667 4.2819 -2.2134 9 8 1.8420 4.4263 -2.9888 10 6 3.8139 5.3208 -2.1100 11 6 3.6590 6.5400 -2.7739 12 6 4.6371 7.5091 -2.6761 13 6 5.7719 7.2791 -1.9220 14 6 5.9365 6.0679 -1.2563 15 16 7.3853 5.7800 -0.2955 16 6 8.4790 5.2109 -1.5543 17 1 8.1141 5.0615 -2.5597 18 6 9.8090 4.9549 -1.2539 19 7 10.2536 5.1367 -0.0284 20 14 10.9688 4.3523 -2.5884 21 1 11.0345 5.3586 -3.6785 22 1 12.3242 4.1557 -2.0146 23 1 10.4697 3.0642 -3.1333 24 6 4.9556 5.0889 -1.3451 25 6 1.8195 2.1120 -1.3769 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 4.0396 0.6476 -0.4025 32 1 3.8900 1.4898 1.1730 33 1 4.8701 2.7072 -1.1277 34 1 4.0786 3.6007 0.1986 35 1 2.7738 6.7243 -3.3644 36 1 4.5145 8.4510 -3.1902 37 1 6.5338 8.0412 -1.8497 38 1 11.1835 4.9574 0.1818 39 1 5.0786 4.1499 -0.8259 40 1 0.8201 2.5433 -1.4338 41 1 1.9665 1.3864 -2.1769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131630884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:05 Heat of formation + Delta-G solvation = -4.127326 kcal Electronic energy + Delta-G solvation = -22248.616461 eV Core-core repulsion = 19026.663684 eV Total energy + Delta-G solvation = -3221.952777 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.44099 -38.35536 -37.36665 -34.37631 -32.56006 -31.26852 -30.58654 -30.39465 -28.20563 -25.61699 -25.15279 -23.14627 -22.46653 -21.74549 -20.41873 -19.86038 -17.84562 -17.14807 -16.41851 -16.19395 -15.56874 -15.00614 -14.89799 -14.42193 -14.39174 -14.01421 -13.88375 -13.55842 -13.38405 -13.07149 -12.79607 -12.66010 -12.58456 -12.18393 -11.99986 -11.52180 -11.42067 -11.23875 -11.19630 -11.12385 -10.83377 -10.79823 -10.76940 -10.35437 -9.93607 -9.74864 -9.20081 -9.01128 -8.68314 -8.55758 -8.01190 -6.77296 -6.33785 -4.08302 1.22580 1.68773 2.98738 3.04868 3.17350 3.18843 3.22440 3.41947 4.07121 4.22267 4.24720 4.42458 4.55811 4.79575 4.95997 5.02602 5.06966 5.13358 5.18654 5.23037 5.32256 5.42589 5.45247 5.52779 5.58544 5.67873 5.72245 5.76448 5.76826 5.82643 5.83606 5.88368 5.99397 6.04581 6.11043 6.17748 6.38808 6.62654 6.73736 6.91503 7.22727 7.52236 7.52407 8.26210 8.27633 9.12092 10.72573 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.004125 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.814343 B = 6786.392455 C = 8036.808827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.085 0.915 5 C -0.130 4.130 6 C 0.086 3.914 7 N -0.616 5.616 8 C 0.581 3.419 9 O -0.548 6.548 10 C -0.152 4.152 11 C -0.062 4.062 12 C -0.143 4.143 13 C -0.056 4.056 14 C -0.109 4.109 15 S -0.037 6.037 16 C -0.521 4.521 17 H 0.075 0.925 18 C 0.075 3.925 19 N -0.870 5.870 20 Si 0.919 3.081 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.273 1.273 24 C -0.085 4.085 25 C 0.113 3.887 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.270 0.730 39 H 0.163 0.837 40 H 0.076 0.924 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.530 -6.686 1.009 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.122 4.122 4 H 0.104 0.896 5 C -0.168 4.168 6 C -0.036 4.036 7 N -0.349 5.349 8 C 0.372 3.628 9 O -0.427 6.427 10 C -0.157 4.157 11 C -0.081 4.081 12 C -0.162 4.162 13 C -0.077 4.077 14 C -0.219 4.219 15 S 0.198 5.802 16 C -0.669 4.669 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.505 5.505 20 Si 0.745 3.255 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.198 1.198 24 C -0.106 4.106 25 C -0.009 4.009 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.179 0.821 40 H 0.094 0.906 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.616 -6.422 1.833 16.069 hybrid contribution 0.634 -0.358 -2.177 2.296 sum -13.981 -6.779 -0.344 15.542 Atomic orbital electron populations 1.21809 0.95702 1.01656 1.02063 1.21460 0.95975 0.94979 1.02539 1.22414 0.95995 0.96726 0.97112 0.89624 1.22797 0.95153 0.96928 1.01910 1.22660 0.90235 0.97218 0.93506 1.48312 1.21458 1.21135 1.44027 1.18096 0.85352 0.80269 0.79060 1.90718 1.35901 1.78546 1.37552 1.19779 0.96275 0.95594 1.04058 1.21150 0.98609 0.91833 0.96540 1.21126 0.94705 0.99392 1.01017 1.22019 0.96078 0.96570 0.93018 1.22810 1.01624 0.95293 1.02204 1.83560 0.99440 1.85250 1.11992 1.22798 0.95928 1.51167 0.96967 0.90719 1.24986 0.97121 0.94983 0.96355 1.69978 1.16488 1.45735 1.18330 0.86202 0.79034 0.79422 0.80825 1.19838 1.20724 1.19805 1.23272 0.91682 1.00442 0.95172 1.22234 0.92472 0.89321 0.96890 0.92546 0.92710 0.92655 0.91560 0.91298 0.90215 0.89455 0.89535 0.89676 0.85492 0.85809 0.85213 0.91993 0.82078 0.90571 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.81 37.16 0.36 -0.69 16 2 C -0.11 -0.80 5.45 -26.73 -0.15 -0.95 16 3 C -0.10 -0.92 2.99 -88.59 -0.26 -1.18 16 4 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 5 C -0.13 -1.23 6.42 -24.90 -0.16 -1.39 16 6 C 0.09 1.08 4.88 -3.07 -0.01 1.07 16 7 N -0.62 -8.84 3.33 -175.69 -0.58 -9.42 16 8 C 0.58 10.12 7.81 -12.32 -0.10 10.03 16 9 O -0.55 -10.77 16.67 5.33 0.09 -10.68 16 10 C -0.15 -2.71 5.87 -104.99 -0.62 -3.33 16 11 C -0.06 -1.04 9.59 -39.12 -0.38 -1.42 16 12 C -0.14 -2.31 10.02 -39.68 -0.40 -2.71 16 13 C -0.06 -1.05 9.79 -39.25 -0.38 -1.43 16 14 C -0.11 -2.26 5.45 -38.99 -0.21 -2.47 16 15 S -0.04 -0.90 21.41 -107.50 -2.30 -3.20 16 16 C -0.52 -14.16 9.46 30.92 0.29 -13.87 16 17 H 0.07 2.03 7.79 -52.49 -0.41 1.62 16 18 C 0.07 2.02 5.49 -17.46 -0.10 1.92 16 19 N -0.87 -24.54 13.22 55.49 0.73 -23.81 16 20 Si 0.92 20.78 29.55 -169.99 -5.02 15.76 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 C -0.09 -1.59 8.34 -38.92 -0.32 -1.91 16 25 C 0.11 1.31 5.84 -2.65 -0.02 1.29 16 26 H 0.06 0.41 7.75 -51.93 -0.40 0.01 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.48 7.97 -51.93 -0.41 0.06 16 30 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 32 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.09 1.19 6.79 -51.93 -0.35 0.84 16 34 H 0.09 1.10 6.67 -51.93 -0.35 0.75 16 35 H 0.13 1.98 7.67 -52.49 -0.40 1.58 16 36 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16 38 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 39 H 0.16 2.76 2.76 -57.57 -0.16 2.60 16 40 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 41 H 0.07 0.75 7.90 -51.93 -0.41 0.34 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -31.20 349.27 -10.10 -41.30 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.83 Total: 1.82 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.45 Total: -17.03 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.15 Total: -33.23 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.20 -10.10 -41.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131630884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.170 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds