Wall clock time and date at job start Tue Mar 31 2020 08:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 H 1.08999 * 110.88620 * 51.12059 * 3 2 1 5 5 C 1.55153 * 111.00228 * 175.00107 * 3 2 1 6 6 C 1.54326 * 102.94199 * 153.61386 * 5 3 2 7 7 N 1.47018 * 107.27078 * 337.80662 * 6 5 3 8 8 C 1.34773 * 125.65367 * 178.90618 * 7 6 5 9 9 O 1.21545 * 120.00865 * 175.01383 * 8 7 6 10 10 C 1.47869 * 119.99308 * 355.28976 * 8 7 6 11 11 C 1.39678 * 120.09723 * 187.73290 * 10 8 7 12 12 C 1.38036 * 120.03692 * 179.97438 * 11 10 8 13 13 C 1.38179 * 120.24549 * 359.97438 * 12 11 10 14 14 C 1.39184 * 120.20033 * 0.02562 * 13 12 11 15 15 S 1.76204 * 120.01723 * 180.02562 * 14 13 12 16 16 C 1.76200 * 99.99661 * 274.98242 * 15 14 13 17 17 H 1.07998 * 120.00379 * 355.00643 * 16 15 14 18 18 C 1.38733 * 119.99865 * 174.99760 * 16 15 14 19 19 N 1.31626 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00293 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46993 * 60.00033 * 20 18 16 22 22 H 1.48494 * 109.47374 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47251 * 300.00320 * 20 18 16 24 24 C 1.38874 * 119.95666 * 359.74253 * 14 13 12 25 25 C 1.47428 * 108.70145 * 359.16610 * 7 6 5 26 26 H 1.08992 * 109.47340 * 60.00052 * 1 2 3 27 27 H 1.09004 * 109.47023 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46983 * 300.00140 * 1 2 3 29 29 H 1.09000 * 109.46983 * 239.99860 * 2 1 3 30 30 H 1.09008 * 109.47023 * 119.99783 * 2 1 3 31 31 H 1.08995 * 110.72589 * 35.24767 * 5 3 2 32 32 H 1.09010 * 110.87197 * 272.04561 * 5 3 2 33 33 H 1.08994 * 109.88411 * 218.38763 * 6 5 3 34 34 H 1.09003 * 110.01323 * 97.29160 * 6 5 3 35 35 H 1.07997 * 119.98331 * 359.95354 * 11 10 8 36 36 H 1.08002 * 119.87803 * 180.02562 * 12 11 10 37 37 H 1.08000 * 119.89751 * 179.97438 * 13 12 11 38 38 H 0.97009 * 119.99691 * 179.97438 * 19 18 16 39 39 H 1.08003 * 120.11713 * 180.28024 * 24 14 13 40 40 H 1.08999 * 110.36462 * 142.74124 * 25 7 6 41 41 H 1.08997 * 110.36609 * 265.06363 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5669 2.0219 0.7928 5 6 3.5858 1.4858 0.1262 6 6 3.9508 2.8223 -0.5536 7 7 2.8409 3.1725 -1.4519 8 6 2.7667 4.2819 -2.2134 9 8 1.8420 4.4263 -2.9888 10 6 3.8139 5.3208 -2.1100 11 6 3.6590 6.5400 -2.7739 12 6 4.6371 7.5091 -2.6761 13 6 5.7719 7.2791 -1.9220 14 6 5.9365 6.0679 -1.2563 15 16 7.3853 5.7800 -0.2955 16 6 8.4790 5.2109 -1.5543 17 1 8.1141 5.0615 -2.5597 18 6 9.8090 4.9549 -1.2539 19 7 10.2536 5.1367 -0.0284 20 14 10.9688 4.3523 -2.5884 21 1 11.0345 5.3586 -3.6785 22 1 12.3242 4.1557 -2.0146 23 1 10.4697 3.0642 -3.1333 24 6 4.9556 5.0889 -1.3451 25 6 1.8195 2.1120 -1.3769 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 4.0396 0.6476 -0.4025 32 1 3.8900 1.4898 1.1730 33 1 4.8701 2.7072 -1.1277 34 1 4.0786 3.6007 0.1986 35 1 2.7738 6.7243 -3.3644 36 1 4.5145 8.4510 -3.1902 37 1 6.5338 8.0412 -1.8497 38 1 11.1835 4.9574 0.1818 39 1 5.0786 4.1499 -0.8259 40 1 0.8201 2.5433 -1.4338 41 1 1.9665 1.3864 -2.1769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131630884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:04 Heat of formation + Delta-G solvation = -20.452261 kcal Electronic energy + Delta-G solvation = -22249.324363 eV Core-core repulsion = 19026.663684 eV Total energy + Delta-G solvation = -3222.660680 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.66702 -39.55858 -38.66641 -35.27201 -34.62380 -32.49202 -31.95435 -31.46989 -29.15851 -27.70415 -26.24008 -24.13475 -23.79930 -22.86401 -21.32459 -21.05513 -19.71701 -18.46932 -17.66405 -17.39308 -16.90396 -16.86606 -16.22923 -15.79906 -15.68936 -15.04563 -14.96890 -14.76947 -14.41647 -14.33552 -13.97252 -13.80943 -13.58951 -13.41573 -13.21647 -13.06304 -12.95128 -12.81998 -12.54623 -12.26039 -12.07602 -11.75229 -11.58439 -11.46149 -11.35274 -11.21994 -11.06763 -10.72292 -10.04067 -9.85502 -9.63049 -8.76996 -8.36681 -6.15965 -0.21029 0.23451 1.32463 1.40063 1.46529 1.64389 1.72603 1.83861 2.25621 2.75506 2.96576 3.26359 3.44216 3.53841 3.64864 3.82782 3.95828 4.07582 4.14597 4.30641 4.33507 4.34720 4.45685 4.50019 4.55062 4.60712 4.62664 4.81112 4.83483 4.90887 5.00080 5.04778 5.11145 5.19676 5.22898 5.29501 5.35263 5.39098 5.41615 5.45445 5.52691 5.82259 6.18681 6.28215 6.93947 7.04542 8.69533 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.004125 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.814343 B = 6786.392455 C = 8036.808827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C -0.091 4.091 4 H 0.089 0.911 5 C -0.122 4.122 6 C 0.080 3.920 7 N -0.612 5.612 8 C 0.575 3.425 9 O -0.576 6.576 10 C -0.159 4.159 11 C -0.059 4.059 12 C -0.127 4.127 13 C -0.066 4.066 14 C -0.130 4.130 15 S -0.074 6.074 16 C -0.539 4.539 17 H 0.065 0.935 18 C 0.027 3.973 19 N -0.903 5.903 20 Si 0.985 3.015 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.266 1.266 24 C -0.087 4.087 25 C 0.107 3.893 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.164 0.836 37 H 0.131 0.869 38 H 0.274 0.726 39 H 0.171 0.829 40 H 0.071 0.929 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.273 -7.573 0.424 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.145 4.145 3 C -0.110 4.110 4 H 0.107 0.893 5 C -0.160 4.160 6 C -0.042 4.042 7 N -0.344 5.344 8 C 0.366 3.634 9 O -0.458 6.458 10 C -0.164 4.164 11 C -0.078 4.078 12 C -0.147 4.147 13 C -0.087 4.087 14 C -0.241 4.241 15 S 0.160 5.840 16 C -0.686 4.686 17 H 0.083 0.917 18 C -0.179 4.179 19 N -0.539 5.539 20 Si 0.807 3.193 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.191 1.191 24 C -0.107 4.107 25 C -0.015 4.015 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.161 0.839 36 H 0.181 0.819 37 H 0.149 0.851 38 H 0.083 0.917 39 H 0.188 0.812 40 H 0.089 0.911 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.365 -7.331 1.275 17.072 hybrid contribution 0.736 -0.070 -1.997 2.129 sum -14.628 -7.400 -0.722 16.410 Atomic orbital electron populations 1.21811 0.95428 1.02212 1.01810 1.21445 0.96154 0.93550 1.03314 1.22381 0.95548 0.97753 0.95314 0.89288 1.22815 0.95560 0.95048 1.02580 1.22719 0.89300 0.99066 0.93066 1.48419 1.22370 1.20663 1.42966 1.18071 0.84941 0.81013 0.79365 1.90694 1.36807 1.79365 1.38941 1.19963 0.96085 0.96451 1.03919 1.21473 0.99144 0.91410 0.95820 1.21429 0.92951 1.00625 0.99657 1.22106 0.97277 0.95912 0.93371 1.22610 1.00482 0.97139 1.03843 1.83432 1.01527 1.85505 1.13487 1.23026 0.96927 1.51610 0.97026 0.91666 1.25869 0.98591 0.94898 0.98544 1.70081 1.17020 1.46634 1.20156 0.85197 0.77086 0.79003 0.77994 1.19373 1.19706 1.19116 1.23348 0.91491 1.00491 0.95393 1.22467 0.91443 0.88689 0.98866 0.93299 0.91781 0.92452 0.91352 0.89935 0.89253 0.87793 0.90932 0.90150 0.83859 0.81891 0.85141 0.91683 0.81241 0.91101 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.81 71.98 0.71 -1.09 16 2 C -0.11 -1.27 5.45 30.59 0.17 -1.10 16 3 C -0.09 -1.44 2.99 -9.48 -0.03 -1.47 16 4 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 5 C -0.12 -2.09 6.42 31.78 0.20 -1.88 16 6 C 0.08 1.99 4.88 86.73 0.42 2.42 16 7 N -0.61 -17.30 3.33 -828.05 -2.76 -20.06 16 8 C 0.58 19.88 7.81 86.79 0.68 20.56 16 9 O -0.58 -22.43 16.67 -3.86 -0.06 -22.49 16 10 C -0.16 -5.61 5.87 -20.11 -0.12 -5.73 16 11 C -0.06 -1.91 9.59 22.57 0.22 -1.69 16 12 C -0.13 -3.86 10.02 22.21 0.22 -3.64 16 13 C -0.07 -2.44 9.79 22.48 0.22 -2.22 16 14 C -0.13 -5.47 5.45 22.65 0.12 -5.35 16 15 S -0.07 -3.75 21.41 -56.49 -1.21 -4.96 16 16 C -0.54 -29.83 9.46 67.94 0.64 -29.19 16 17 H 0.07 3.61 7.79 -2.91 -0.02 3.59 16 18 C 0.03 1.46 5.49 84.84 0.47 1.93 16 19 N -0.90 -51.56 13.22 21.64 0.29 -51.27 16 20 Si 0.98 42.53 29.55 68.60 2.03 44.56 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 C -0.09 -3.27 8.34 22.70 0.19 -3.08 16 25 C 0.11 2.36 5.84 86.78 0.51 2.87 16 26 H 0.05 0.64 7.75 -2.39 -0.02 0.62 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.81 7.97 -2.39 -0.02 0.79 16 30 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.09 1.39 8.04 -2.39 -0.02 1.37 16 32 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.07 2.03 6.79 -2.39 -0.02 2.01 16 34 H 0.08 2.09 6.67 -2.39 -0.02 2.07 16 35 H 0.14 4.16 7.67 -2.91 -0.02 4.14 16 36 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 39 H 0.17 5.96 2.76 -7.69 -0.02 5.93 16 40 H 0.07 1.66 8.09 -2.39 -0.02 1.64 16 41 H 0.07 1.53 7.90 -2.39 -0.02 1.51 16 Total: -1.00 -67.70 349.27 3.92 -63.79 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 1.01 Total: 19.11 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 4.62 Total: -28.68 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -2.47 Total: -71.33 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.06 Total: -22.49 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -1.21 Total: -4.96 kcal Total: -67.70 3.92 -63.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131630884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.335 kcal (2) G-P(sol) polarization free energy of solvation -67.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds