Wall clock time and date at job start Tue Mar 31 2020 08:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47211 * 2 1 4 4 H 1.08994 * 109.47107 * 54.92785 * 3 2 1 5 5 C 1.50707 * 109.46846 * 174.92455 * 3 2 1 6 6 H 1.07997 * 119.99755 * 120.00600 * 5 3 2 7 7 C 1.37879 * 119.99902 * 299.99975 * 5 3 2 8 8 N 1.31511 * 120.00238 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99695 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47395 * 90.00178 * 9 7 5 11 11 H 1.48503 * 109.46677 * 210.00219 * 9 7 5 12 12 H 1.48498 * 109.47145 * 329.99447 * 9 7 5 13 13 N 1.46900 * 109.47529 * 294.92361 * 3 2 1 14 14 C 1.46894 * 110.99852 * 154.13343 * 13 3 2 15 15 C 1.50710 * 109.46678 * 185.62438 * 14 13 3 16 16 C 1.38267 * 119.97139 * 90.00028 * 15 14 13 17 17 C 1.38177 * 120.02094 * 179.97438 * 16 15 14 18 18 C 1.38483 * 119.97533 * 359.97438 * 17 16 15 19 19 F 1.35098 * 120.02586 * 179.97438 * 18 17 16 20 20 C 1.38441 * 119.94705 * 0.02562 * 18 17 16 21 21 C 1.50702 * 120.00906 * 180.02562 * 20 18 17 22 22 F 1.39902 * 109.47053 * 179.97438 * 21 20 18 23 23 F 1.39897 * 109.47120 * 299.99494 * 21 20 18 24 24 F 1.39903 * 109.47562 * 59.99895 * 21 20 18 25 25 C 1.38213 * 119.97678 * 359.74046 * 20 18 17 26 26 H 1.08994 * 109.47414 * 180.48471 * 1 2 3 27 27 H 1.09002 * 109.47109 * 300.48523 * 1 2 3 28 28 H 1.09000 * 109.47210 * 60.48099 * 1 2 3 29 29 H 1.09000 * 109.47345 * 240.00036 * 2 1 3 30 30 H 1.09006 * 109.47269 * 120.00253 * 2 1 3 31 31 H 0.96996 * 120.00490 * 179.97438 * 8 7 5 32 32 H 1.00899 * 110.99834 * 278.09030 * 13 3 2 33 33 H 1.09002 * 109.46990 * 305.61775 * 14 13 3 34 34 H 1.08997 * 109.47645 * 65.62485 * 14 13 3 35 35 H 1.08000 * 119.99165 * 359.97438 * 16 15 14 36 36 H 1.07999 * 120.01208 * 179.97438 * 17 16 15 37 37 H 1.07998 * 119.99015 * 180.27570 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9818 0.8410 5 6 3.5418 1.4442 0.1257 6 1 4.1480 1.8885 -0.6498 7 6 4.1418 0.8788 1.2309 8 7 3.4035 0.3374 2.1750 9 14 6.0033 0.8816 1.3870 10 1 6.4392 2.1148 2.0901 11 1 6.4368 -0.3092 2.1611 12 1 6.6135 0.8413 0.0338 13 7 1.6530 2.0988 -1.2560 14 6 1.5541 3.5539 -1.0808 15 6 1.0235 4.1772 -2.3462 16 6 -0.3390 4.3377 -2.5186 17 6 -0.8265 4.9095 -3.6781 18 6 0.0500 5.3224 -4.6676 19 9 -0.4256 5.8811 -5.8019 20 6 1.4140 5.1611 -4.4938 21 6 2.3691 5.6104 -5.5694 22 9 3.6826 5.3454 -5.1670 23 9 2.0956 4.9192 -6.7545 24 9 2.2161 6.9843 -5.7849 25 6 1.8996 4.5933 -3.3310 26 1 -0.3634 -1.0275 0.0087 27 1 -0.3633 0.5214 0.8856 28 1 -0.3633 0.5063 -0.8943 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8256 -0.0607 2.9523 32 1 2.2959 1.8668 -1.9982 33 1 0.8774 3.7753 -0.2554 34 1 2.5408 3.9614 -0.8611 35 1 -1.0224 4.0160 -1.7466 36 1 -1.8908 5.0344 -3.8128 37 1 2.9638 4.4715 -3.1933 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162585897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:28 Heat of formation + Delta-G solvation = -194.933663 kcal Electronic energy + Delta-G solvation = -25006.430737 eV Core-core repulsion = 20668.134059 eV Total energy + Delta-G solvation = -4338.296677 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.33809 -50.14958 -48.78007 -48.75909 -40.48337 -37.89283 -34.80202 -33.43665 -33.01915 -31.34242 -28.40827 -27.20903 -25.97959 -24.32729 -23.67804 -22.31604 -21.36727 -19.64509 -19.59458 -19.45644 -18.69755 -18.27606 -17.40821 -16.87170 -16.76720 -16.07175 -15.75424 -15.67003 -15.61873 -15.40220 -15.19064 -15.16196 -14.91904 -14.84834 -14.57051 -14.44482 -14.09136 -13.73056 -13.60338 -13.28430 -13.12952 -12.98368 -12.78237 -12.54586 -12.43170 -12.22116 -12.00341 -11.46919 -11.36163 -10.99013 -10.43669 -10.41164 -9.81773 -9.04917 -8.04166 -6.25235 -0.29420 0.01269 1.38969 1.42531 1.48841 1.49897 2.26381 2.41714 2.52369 2.78760 3.00133 3.16922 3.25232 3.63115 3.66113 3.99380 4.05352 4.14541 4.44631 4.62315 4.70931 4.79189 4.81554 4.83626 4.97222 4.98923 5.02928 5.22492 5.45311 5.48197 5.55802 5.63406 5.66737 5.80800 6.12633 6.22058 6.38040 6.80074 7.01779 7.46387 8.92357 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.003865 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.262125 B = 7242.297601 C = 8402.544806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.223 3.777 4 H 0.008 0.992 5 C -0.559 4.559 6 H 0.051 0.949 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.673 5.673 14 C 0.104 3.896 15 C -0.080 4.080 16 C -0.033 4.033 17 C -0.141 4.141 18 C 0.130 3.870 19 F -0.133 7.133 20 C -0.231 4.231 21 C 0.513 3.487 22 F -0.175 7.175 23 F -0.178 7.178 24 F -0.177 7.177 25 C -0.046 4.046 26 H 0.040 0.960 27 H 0.033 0.967 28 H 0.061 0.939 29 H 0.025 0.975 30 H 0.059 0.941 31 H 0.261 0.739 32 H 0.330 0.670 33 H 0.080 0.920 34 H 0.029 0.971 35 H 0.164 0.836 36 H 0.177 0.823 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.840 10.051 -11.910 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.114 3.886 4 H 0.026 0.974 5 C -0.598 4.598 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.771 3.229 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.302 5.302 14 C -0.025 4.025 15 C -0.081 4.081 16 C -0.051 4.051 17 C -0.160 4.160 18 C 0.110 3.890 19 F -0.112 7.112 20 C -0.233 4.233 21 C 0.459 3.541 22 F -0.156 7.156 23 F -0.160 7.160 24 F -0.159 7.159 25 C -0.065 4.065 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.182 0.818 36 H 0.194 0.806 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.494 9.884 -11.702 17.515 hybrid contribution 2.442 0.260 -0.014 2.456 sum -6.052 10.144 -11.716 16.637 Atomic orbital electron populations 1.21561 0.96204 0.99671 1.00796 1.21367 0.94590 0.98397 0.99899 1.18943 0.91473 0.91590 0.86591 0.97368 1.22190 0.94226 1.38022 1.05409 0.93106 1.25578 1.01553 0.94855 0.95663 1.69984 1.36223 1.38788 1.09782 0.85780 0.81699 0.77442 0.78021 1.20455 1.21102 1.19695 1.60890 1.54544 1.06215 1.08554 1.20738 0.99205 0.88983 0.93546 1.19988 0.94061 0.98129 0.95936 1.21429 0.94673 0.92258 0.96735 1.21438 1.01490 1.00616 0.92409 1.17472 0.90540 0.96851 0.84132 1.91539 1.88654 1.82525 1.48467 1.19981 0.92620 1.12686 0.98010 1.18118 0.79655 0.75084 0.81213 1.93185 1.38333 1.93698 1.90391 1.93215 1.93616 1.79363 1.49756 1.93214 1.95535 1.31810 1.95316 1.20879 1.01538 0.93676 0.90367 0.94076 0.94768 0.91970 0.95571 0.92231 0.92939 0.85419 0.90169 0.95273 0.81837 0.80577 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.62 9.80 71.98 0.71 -3.91 16 2 C -0.10 -4.68 5.45 30.59 0.17 -4.51 16 3 C 0.22 10.18 1.98 44.17 0.09 10.26 16 4 H 0.01 0.42 7.70 -2.39 -0.02 0.41 16 5 C -0.56 -28.52 8.47 25.60 0.22 -28.31 16 6 H 0.05 2.56 7.73 -2.91 -0.02 2.54 16 7 C 0.02 1.25 5.29 84.66 0.45 1.70 16 8 N -0.91 -49.90 11.29 21.45 0.24 -49.66 16 9 Si 0.94 42.00 29.54 68.60 2.03 44.02 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 13 N -0.67 -24.66 5.67 -499.46 -2.83 -27.49 16 14 C 0.10 3.25 5.64 85.56 0.48 3.73 16 15 C -0.08 -2.00 5.44 -19.86 -0.11 -2.11 16 16 C -0.03 -0.64 9.70 22.26 0.22 -0.43 16 17 C -0.14 -2.52 10.03 22.31 0.22 -2.30 16 18 C 0.13 2.91 7.13 22.38 0.16 3.07 16 19 F -0.13 -3.12 16.47 44.97 0.74 -2.38 16 20 C -0.23 -5.66 5.38 -19.82 -0.11 -5.76 16 21 C 0.51 12.99 3.03 71.24 0.22 13.21 16 22 F -0.17 -4.51 15.97 44.97 0.72 -3.79 16 23 F -0.18 -4.67 17.05 44.97 0.77 -3.90 16 24 F -0.18 -4.51 17.06 44.97 0.77 -3.75 16 25 C -0.05 -1.15 9.08 22.26 0.20 -0.95 16 26 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 2.11 7.77 -2.39 -0.02 2.09 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 3.08 5.95 -2.38 -0.01 3.07 16 31 H 0.26 13.78 8.31 -92.71 -0.77 13.00 16 32 H 0.33 12.26 8.45 -89.70 -0.76 11.50 16 33 H 0.08 2.44 7.86 -2.39 -0.02 2.42 16 34 H 0.03 0.99 8.06 -2.39 -0.02 0.97 16 35 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 37 H 0.14 3.59 7.16 -2.91 -0.02 3.57 16 Total: -1.00 -55.63 330.30 5.69 -49.94 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.35 Total: 13.32 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 2.91 Total: -16.30 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -2.59 Total: -77.15 kcal Atomic # 9 Polarization: -16.81 SS G_CDS: 2.99 Total: -13.82 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -55.63 5.69 -49.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162585897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.998 kcal (2) G-P(sol) polarization free energy of solvation -55.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds