Wall clock time and date at job start Tue Mar 31 2020 08:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46925 * 2 1 4 4 H 1.09007 * 109.47227 * 175.22150 * 3 2 1 5 5 C 1.50703 * 109.46744 * 55.22460 * 3 2 1 6 6 H 1.08007 * 119.99794 * 245.71939 * 5 3 2 7 7 C 1.37880 * 120.00209 * 65.72300 * 5 3 2 8 8 N 1.31516 * 119.99777 * 5.51496 * 7 5 3 9 9 Si 1.86794 * 120.00161 * 185.51323 * 7 5 3 10 10 H 1.48493 * 109.47372 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47377 * 300.00240 * 9 7 5 12 12 H 1.48503 * 109.46988 * 59.99778 * 9 7 5 13 13 N 1.46897 * 109.47355 * 295.22635 * 3 2 1 14 14 C 1.46906 * 110.99751 * 279.79500 * 13 3 2 15 15 C 1.50702 * 109.46933 * 184.98626 * 14 13 3 16 16 C 1.38264 * 119.97896 * 89.99964 * 15 14 13 17 17 C 1.38177 * 120.02724 * 179.97438 * 16 15 14 18 18 C 1.38477 * 119.97466 * 0.02562 * 17 16 15 19 19 F 1.35096 * 120.02438 * 179.97438 * 18 17 16 20 20 C 1.38443 * 119.94659 * 359.97438 * 18 17 16 21 21 C 1.50701 * 120.00889 * 180.02562 * 20 18 17 22 22 F 1.39899 * 109.47063 * 179.97438 * 21 20 18 23 23 F 1.39894 * 109.47207 * 300.00105 * 21 20 18 24 24 F 1.39902 * 109.47307 * 60.00100 * 21 20 18 25 25 C 1.38212 * 119.97653 * 359.74620 * 20 18 17 26 26 H 1.09006 * 109.46849 * 184.94575 * 1 2 3 27 27 H 1.08994 * 109.47238 * 304.94402 * 1 2 3 28 28 H 1.09005 * 109.47252 * 64.94677 * 1 2 3 29 29 H 1.09004 * 109.47300 * 240.00405 * 2 1 3 30 30 H 1.08999 * 109.47335 * 120.00150 * 2 1 3 31 31 H 0.96996 * 120.00132 * 355.15656 * 8 7 5 32 32 H 1.00896 * 111.00277 * 155.84291 * 13 3 2 33 33 H 1.08998 * 109.46881 * 304.97873 * 14 13 3 34 34 H 1.08994 * 109.46987 * 64.98401 * 14 13 3 35 35 H 1.08003 * 119.98377 * 359.97438 * 16 15 14 36 36 H 1.08004 * 120.01219 * 179.97438 * 17 16 15 37 37 H 1.08001 * 119.98928 * 180.27915 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1266 1.4438 0.0856 5 6 1.4433 2.1862 1.1671 6 1 0.7589 3.0036 0.9937 7 6 1.7710 1.8231 2.4562 8 7 2.6852 0.9016 2.6676 9 14 0.9164 2.6399 3.9025 10 1 1.4444 2.0777 5.1714 11 1 1.1708 4.1026 3.8661 12 1 -0.5450 2.3896 3.8197 13 7 1.6466 2.1010 -1.2529 14 6 2.5539 1.7331 -2.3482 15 6 2.1951 2.5190 -3.5830 16 6 2.7852 3.7475 -3.8157 17 6 2.4574 4.4687 -4.9478 18 6 1.5370 3.9609 -5.8492 19 9 1.2154 4.6654 -6.9562 20 6 0.9468 2.7307 -5.6152 21 6 -0.0546 2.1764 -6.5956 22 9 -0.5072 0.9313 -6.1461 23 9 -1.1374 3.0555 -6.7035 24 9 0.5517 2.0275 -7.8476 25 6 1.2806 2.0084 -4.4850 26 1 -0.3633 -1.0239 0.0886 27 1 -0.3633 0.5886 0.8423 28 1 -0.3634 0.4352 -0.9310 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.0784 0.4276 1.9182 32 1 1.6062 3.1025 -1.1378 33 1 3.5808 1.9577 -2.0603 34 1 2.4594 0.6672 -2.5557 35 1 3.5027 4.1436 -3.1123 36 1 2.9182 5.4286 -5.1291 37 1 0.8236 1.0466 -4.3045 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162586009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:30 Heat of formation + Delta-G solvation = -181.992009 kcal Electronic energy + Delta-G solvation = -25077.940236 eV Core-core repulsion = 20740.204750 eV Total energy + Delta-G solvation = -4337.735485 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.35210 -49.25204 -47.78927 -47.75969 -39.60897 -36.64615 -33.58654 -32.25571 -31.28987 -30.03185 -26.45073 -26.21274 -24.20249 -23.51981 -22.91137 -21.40672 -19.36698 -18.65495 -18.63676 -18.50433 -17.49215 -17.01787 -16.54255 -15.95261 -15.12194 -14.73266 -14.62030 -14.51177 -14.33152 -14.20185 -14.18933 -13.91633 -13.88587 -13.76177 -13.51131 -13.40684 -12.89927 -12.66566 -12.34111 -12.19049 -11.73020 -11.38017 -11.34615 -11.14771 -10.81741 -10.22299 -10.14224 -9.97776 -9.80657 -9.60004 -8.95064 -8.56953 -8.38267 -7.54343 -6.40822 -4.13852 0.55875 0.86971 2.44539 3.11414 3.39355 3.42035 3.47682 3.59767 3.69652 3.90867 4.22877 4.44392 4.46259 4.64071 4.85715 4.97749 5.21992 5.28179 5.32283 5.60057 5.64972 5.71912 5.86154 5.95272 6.22971 6.31518 6.34188 6.47582 6.53588 6.86082 6.97008 7.17339 7.34245 7.50772 7.75153 7.97688 8.38196 8.47952 8.79872 9.56865 10.95676 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.022318 B = 0.003420 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.310920 B = 8186.235960 C = 8627.781866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 C 0.204 3.796 4 H -0.007 1.007 5 C -0.592 4.592 6 H 0.054 0.946 7 C 0.024 3.976 8 N -0.911 5.911 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.673 5.673 14 C 0.092 3.908 15 C -0.078 4.078 16 C -0.054 4.054 17 C -0.154 4.154 18 C 0.139 3.861 19 F -0.129 7.129 20 C -0.223 4.223 21 C 0.514 3.486 22 F -0.172 7.172 23 F -0.174 7.174 24 F -0.176 7.176 25 C -0.026 4.026 26 H 0.017 0.983 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.021 0.979 30 H 0.058 0.942 31 H 0.271 0.729 32 H 0.336 0.664 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 4.012 -17.001 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.147 4.147 3 C 0.096 3.904 4 H 0.011 0.989 5 C -0.631 4.631 6 H 0.073 0.927 7 C -0.181 4.181 8 N -0.547 5.547 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.304 5.304 14 C -0.037 4.037 15 C -0.079 4.079 16 C -0.073 4.073 17 C -0.172 4.172 18 C 0.119 3.881 19 F -0.107 7.107 20 C -0.226 4.226 21 C 0.460 3.540 22 F -0.153 7.153 23 F -0.155 7.155 24 F -0.157 7.157 25 C -0.044 4.044 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.358 3.597 -15.554 16.022 hybrid contribution 0.554 0.464 -1.874 2.009 sum -0.804 4.061 -17.428 17.913 Atomic orbital electron populations 1.21460 0.96330 0.97977 1.02073 1.21538 0.96539 0.98178 0.98433 1.19312 0.93255 0.91736 0.86099 0.98924 1.21891 1.30736 1.18811 0.91643 0.92746 1.25701 0.95450 0.96868 1.00075 1.70809 1.24130 1.24013 1.35763 0.83576 0.75762 0.75449 0.75771 1.20864 1.21572 1.21324 1.60714 1.50040 1.13618 1.06024 1.20984 0.95109 0.98800 0.88773 1.20138 0.95921 0.95212 0.96600 1.21258 0.97497 0.93067 0.95451 1.21111 0.99166 1.02065 0.94882 1.17251 0.96723 0.89356 0.84750 1.91550 1.91368 1.77703 1.50126 1.20040 1.04460 0.97955 1.00113 1.18034 0.80321 0.75848 0.79822 1.93191 1.89957 1.43240 1.88918 1.93230 1.57156 1.68892 1.96224 1.93222 1.83101 1.95611 1.43794 1.20870 0.94097 0.99576 0.89893 0.96342 0.91752 0.93602 0.96078 0.92300 0.91721 0.84653 0.94565 0.90385 0.84036 0.83644 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.53 37.16 0.35 -2.20 16 2 C -0.11 -2.39 5.47 -26.73 -0.15 -2.54 16 3 C 0.20 4.65 1.92 -68.86 -0.13 4.52 16 4 H -0.01 -0.17 7.31 -51.93 -0.38 -0.55 16 5 C -0.59 -15.21 6.92 -34.44 -0.24 -15.45 16 6 H 0.05 1.41 7.75 -52.48 -0.41 1.01 16 7 C 0.02 0.64 5.28 -17.82 -0.09 0.54 16 8 N -0.91 -25.88 13.20 55.43 0.73 -25.14 16 9 Si 1.07 24.05 29.91 -169.99 -5.08 18.96 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 13 N -0.67 -12.66 5.85 -109.22 -0.64 -13.30 16 14 C 0.09 1.40 5.63 -4.97 -0.03 1.38 16 15 C -0.08 -1.00 5.34 -104.61 -0.56 -1.56 16 16 C -0.05 -0.59 9.70 -39.59 -0.38 -0.98 16 17 C -0.15 -1.59 10.03 -39.52 -0.40 -1.98 16 18 C 0.14 1.67 7.13 -39.42 -0.28 1.39 16 19 F -0.13 -1.61 16.47 2.25 0.04 -1.57 16 20 C -0.22 -2.81 5.38 -104.56 -0.56 -3.37 16 21 C 0.51 6.52 3.03 36.01 0.11 6.63 16 22 F -0.17 -2.17 15.97 2.25 0.04 -2.14 16 23 F -0.17 -2.32 17.05 2.25 0.04 -2.28 16 24 F -0.18 -2.23 17.06 2.25 0.04 -2.20 16 25 C -0.03 -0.33 9.08 -39.59 -0.36 -0.68 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 1.50 6.89 -51.93 -0.36 1.14 16 28 H 0.04 0.92 7.89 -51.93 -0.41 0.51 16 29 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 30 H 0.06 1.43 6.18 -51.93 -0.32 1.11 16 31 H 0.27 7.63 5.62 -40.82 -0.23 7.40 16 32 H 0.34 6.31 8.30 -39.29 -0.33 5.98 16 33 H 0.04 0.55 7.89 -51.93 -0.41 0.14 16 34 H 0.08 1.19 7.14 -51.93 -0.37 0.82 16 35 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.15 1.14 8.06 -52.48 -0.42 0.71 16 37 H 0.15 1.82 7.16 -52.49 -0.38 1.45 16 LS Contribution 324.80 15.07 4.89 4.89 Total: -1.00 -27.58 324.80 -6.68 -34.26 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.02 Total: 2.80 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -2.72 Total: -14.30 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.09 Total: -38.45 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 0.15 Total: -8.18 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.08 Total: 18.96 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.58 -6.68 -34.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162586009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.727 kcal (2) G-P(sol) polarization free energy of solvation -27.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds