Wall clock time and date at job start Tue Mar 31 2020 08:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46925 * 2 1 4 4 H 1.09007 * 109.47227 * 175.22150 * 3 2 1 5 5 C 1.50703 * 109.46744 * 55.22460 * 3 2 1 6 6 H 1.08007 * 119.99794 * 245.71939 * 5 3 2 7 7 C 1.37880 * 120.00209 * 65.72300 * 5 3 2 8 8 N 1.31516 * 119.99777 * 5.51496 * 7 5 3 9 9 Si 1.86794 * 120.00161 * 185.51323 * 7 5 3 10 10 H 1.48493 * 109.47372 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47377 * 300.00240 * 9 7 5 12 12 H 1.48503 * 109.46988 * 59.99778 * 9 7 5 13 13 N 1.46897 * 109.47355 * 295.22635 * 3 2 1 14 14 C 1.46906 * 110.99751 * 279.79500 * 13 3 2 15 15 C 1.50702 * 109.46933 * 184.98626 * 14 13 3 16 16 C 1.38264 * 119.97896 * 89.99964 * 15 14 13 17 17 C 1.38177 * 120.02724 * 179.97438 * 16 15 14 18 18 C 1.38477 * 119.97466 * 0.02562 * 17 16 15 19 19 F 1.35096 * 120.02438 * 179.97438 * 18 17 16 20 20 C 1.38443 * 119.94659 * 359.97438 * 18 17 16 21 21 C 1.50701 * 120.00889 * 180.02562 * 20 18 17 22 22 F 1.39899 * 109.47063 * 179.97438 * 21 20 18 23 23 F 1.39894 * 109.47207 * 300.00105 * 21 20 18 24 24 F 1.39902 * 109.47307 * 60.00100 * 21 20 18 25 25 C 1.38212 * 119.97653 * 359.74620 * 20 18 17 26 26 H 1.09006 * 109.46849 * 184.94575 * 1 2 3 27 27 H 1.08994 * 109.47238 * 304.94402 * 1 2 3 28 28 H 1.09005 * 109.47252 * 64.94677 * 1 2 3 29 29 H 1.09004 * 109.47300 * 240.00405 * 2 1 3 30 30 H 1.08999 * 109.47335 * 120.00150 * 2 1 3 31 31 H 0.96996 * 120.00132 * 355.15656 * 8 7 5 32 32 H 1.00896 * 111.00277 * 155.84291 * 13 3 2 33 33 H 1.08998 * 109.46881 * 304.97873 * 14 13 3 34 34 H 1.08994 * 109.46987 * 64.98401 * 14 13 3 35 35 H 1.08003 * 119.98377 * 359.97438 * 16 15 14 36 36 H 1.08004 * 120.01219 * 179.97438 * 17 16 15 37 37 H 1.08001 * 119.98928 * 180.27915 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1266 1.4438 0.0856 5 6 1.4433 2.1862 1.1671 6 1 0.7589 3.0036 0.9937 7 6 1.7710 1.8231 2.4562 8 7 2.6852 0.9016 2.6676 9 14 0.9164 2.6399 3.9025 10 1 1.4444 2.0777 5.1714 11 1 1.1708 4.1026 3.8661 12 1 -0.5450 2.3896 3.8197 13 7 1.6466 2.1010 -1.2529 14 6 2.5539 1.7331 -2.3482 15 6 2.1951 2.5190 -3.5830 16 6 2.7852 3.7475 -3.8157 17 6 2.4574 4.4687 -4.9478 18 6 1.5370 3.9609 -5.8492 19 9 1.2154 4.6654 -6.9562 20 6 0.9468 2.7307 -5.6152 21 6 -0.0546 2.1764 -6.5956 22 9 -0.5072 0.9313 -6.1461 23 9 -1.1374 3.0555 -6.7035 24 9 0.5517 2.0275 -7.8476 25 6 1.2806 2.0084 -4.4850 26 1 -0.3633 -1.0239 0.0886 27 1 -0.3633 0.5886 0.8423 28 1 -0.3634 0.4352 -0.9310 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.0784 0.4276 1.9182 32 1 1.6062 3.1025 -1.1378 33 1 3.5808 1.9577 -2.0603 34 1 2.4594 0.6672 -2.5557 35 1 3.5027 4.1436 -3.1123 36 1 2.9182 5.4286 -5.1291 37 1 0.8236 1.0466 -4.3045 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162586009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:29 Heat of formation + Delta-G solvation = -196.010477 kcal Electronic energy + Delta-G solvation = -25078.548122 eV Core-core repulsion = 20740.204750 eV Total energy + Delta-G solvation = -4338.343372 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.35517 -50.20133 -48.79196 -48.77601 -40.58990 -38.29275 -35.11203 -33.33174 -32.86643 -31.42246 -28.02537 -27.23512 -25.81931 -25.20162 -23.85269 -22.48834 -21.14978 -19.66292 -19.65154 -19.52583 -18.94350 -18.32035 -17.52638 -16.90085 -16.45141 -16.15986 -15.72306 -15.67618 -15.63379 -15.45959 -15.29804 -15.20205 -14.94918 -14.93036 -14.87373 -14.56971 -14.11538 -13.92238 -13.78842 -13.53971 -13.14416 -13.09989 -12.59551 -12.55523 -12.31097 -11.94782 -11.91516 -11.72899 -11.56497 -10.57965 -10.49144 -10.36913 -9.88285 -9.11283 -8.50710 -6.23614 -0.37968 -0.04944 1.46202 1.57714 1.63945 1.82276 2.17248 2.49613 2.60767 2.75015 2.95034 3.22981 3.27606 3.51622 3.58430 3.79140 4.00337 4.04458 4.28231 4.44084 4.56132 4.59936 4.66178 4.73874 4.78978 4.82322 4.93487 5.07047 5.23010 5.32709 5.40856 5.53655 5.55344 5.73010 5.92989 6.14269 6.52560 6.65453 6.83623 7.54705 8.86477 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.022318 B = 0.003420 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.310920 B = 8186.235960 C = 8627.781866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.104 4.104 3 C 0.208 3.792 4 H -0.034 1.034 5 C -0.592 4.592 6 H 0.050 0.950 7 C -0.023 4.023 8 N -0.939 5.939 9 Si 1.106 2.894 10 H -0.290 1.290 11 H -0.273 1.273 12 H -0.275 1.275 13 N -0.671 5.671 14 C 0.097 3.903 15 C -0.087 4.087 16 C -0.047 4.047 17 C -0.141 4.141 18 C 0.132 3.868 19 F -0.132 7.132 20 C -0.231 4.231 21 C 0.514 3.486 22 F -0.173 7.173 23 F -0.179 7.179 24 F -0.177 7.177 25 C -0.029 4.029 26 H 0.036 0.964 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.336 0.664 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.160 0.840 36 H 0.176 0.824 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 5.136 -17.883 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.143 4.143 3 C 0.100 3.900 4 H -0.017 1.017 5 C -0.630 4.630 6 H 0.068 0.932 7 C -0.222 4.222 8 N -0.578 5.578 9 Si 0.930 3.070 10 H -0.216 1.216 11 H -0.198 1.198 12 H -0.201 1.201 13 N -0.301 5.301 14 C -0.031 4.031 15 C -0.088 4.088 16 C -0.065 4.065 17 C -0.159 4.159 18 C 0.113 3.887 19 F -0.111 7.111 20 C -0.233 4.233 21 C 0.460 3.540 22 F -0.154 7.154 23 F -0.160 7.160 24 F -0.158 7.158 25 C -0.047 4.047 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.178 0.822 36 H 0.194 0.806 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.623 4.731 -16.470 17.213 hybrid contribution 0.648 0.131 -1.708 1.831 sum -0.975 4.862 -18.178 18.842 Atomic orbital electron populations 1.21346 0.95343 0.98798 1.01391 1.21443 0.97279 0.97550 0.98031 1.19104 0.91345 0.92319 0.87275 1.01681 1.22175 1.29831 1.18384 0.92653 0.93195 1.26875 0.95454 0.96908 1.02936 1.70908 1.25876 1.25550 1.35437 0.83047 0.75462 0.75559 0.72967 1.21593 1.19805 1.20058 1.60602 1.51065 1.13379 1.05096 1.20917 0.94471 0.99235 0.88499 1.19907 0.97045 0.96008 0.95806 1.21458 0.97122 0.92137 0.95827 1.21390 0.98006 1.02852 0.93676 1.17475 0.97055 0.89221 0.84986 1.91545 1.91450 1.77696 1.50371 1.20041 1.04773 0.98419 1.00114 1.18075 0.80266 0.75752 0.79887 1.93187 1.89990 1.43306 1.88920 1.93218 1.57450 1.69064 1.96260 1.93218 1.83082 1.95610 1.43903 1.20851 0.94181 0.99719 0.89997 0.94464 0.94272 0.92588 0.94075 0.95042 0.92780 0.84611 0.94372 0.90468 0.82223 0.80647 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.60 9.53 71.98 0.69 -3.91 16 2 C -0.10 -4.59 5.47 30.59 0.17 -4.43 16 3 C 0.21 9.52 1.92 44.17 0.08 9.61 16 4 H -0.03 -1.74 7.31 -2.38 -0.02 -1.75 16 5 C -0.59 -30.38 6.92 25.60 0.18 -30.21 16 6 H 0.05 2.56 7.75 -2.91 -0.02 2.54 16 7 C -0.02 -1.21 5.28 84.65 0.45 -0.77 16 8 N -0.94 -54.30 13.20 21.45 0.28 -54.02 16 9 Si 1.11 48.16 29.91 68.60 2.05 50.22 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 13 N -0.67 -24.60 5.85 -499.45 -2.92 -27.52 16 14 C 0.10 2.84 5.63 85.56 0.48 3.32 16 15 C -0.09 -2.06 5.34 -19.86 -0.11 -2.17 16 16 C -0.05 -0.90 9.70 22.26 0.22 -0.68 16 17 C -0.14 -2.46 10.03 22.31 0.22 -2.24 16 18 C 0.13 2.89 7.13 22.38 0.16 3.05 16 19 F -0.13 -3.03 16.47 44.97 0.74 -2.29 16 20 C -0.23 -5.45 5.38 -19.82 -0.11 -5.55 16 21 C 0.51 12.47 3.03 71.24 0.22 12.69 16 22 F -0.17 -4.20 15.97 44.97 0.72 -3.48 16 23 F -0.18 -4.57 17.05 44.97 0.77 -3.81 16 24 F -0.18 -4.30 17.06 44.97 0.77 -3.53 16 25 C -0.03 -0.68 9.08 22.26 0.20 -0.48 16 26 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.04 1.79 6.89 -2.39 -0.02 1.77 16 28 H 0.06 2.16 7.89 -2.38 -0.02 2.15 16 29 H 0.04 1.61 7.13 -2.38 -0.02 1.60 16 30 H 0.03 1.55 6.18 -2.39 -0.01 1.53 16 31 H 0.26 15.15 5.62 -92.71 -0.52 14.63 16 32 H 0.34 12.23 8.30 -89.70 -0.74 11.49 16 33 H 0.04 1.11 7.89 -2.39 -0.02 1.09 16 34 H 0.08 2.25 7.14 -2.39 -0.02 2.24 16 35 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.15 3.47 7.16 -2.91 -0.02 3.45 16 Total: -1.00 -58.73 324.80 5.88 -52.85 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.62 Total: 13.34 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 2.85 Total: -21.78 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -2.64 Total: -81.53 kcal Atomic # 9 Polarization: -16.10 SS G_CDS: 2.99 Total: -13.11 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.05 Total: 50.22 kcal Total: -58.73 5.88 -52.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162586009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.158 kcal (2) G-P(sol) polarization free energy of solvation -58.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds