Wall clock time and date at job start Tue Mar 31 2020 08:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99714 * 2 1 4 4 C 1.52999 * 109.46939 * 125.00349 * 3 2 1 5 5 C 1.53002 * 109.47363 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47513 * 179.97438 * 5 4 3 7 7 O 1.21297 * 119.99898 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00342 * 180.02562 * 6 5 4 9 9 C 1.40134 * 120.00068 * 185.53129 * 8 6 5 10 10 C 1.38648 * 120.10201 * 24.81560 * 9 8 6 11 11 C 1.38254 * 120.00935 * 180.02562 * 10 9 8 12 12 C 1.38304 * 120.20737 * 359.97261 * 11 10 9 13 13 C 1.38191 * 120.20073 * 0.02728 * 12 11 10 14 14 C 1.38782 * 119.99201 * 359.97438 * 13 12 11 15 15 S 1.76198 * 120.10682 * 180.02562 * 14 13 12 16 16 C 1.81399 * 103.00125 * 359.95629 * 15 14 13 17 17 C 1.50695 * 109.47411 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99843 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00270 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99816 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47151 * 90.00061 * 21 19 17 23 23 H 1.48508 * 109.46772 * 209.99719 * 21 19 17 24 24 H 1.48500 * 109.47230 * 329.99694 * 21 19 17 25 25 H 1.07999 * 119.99905 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99922 * 180.02562 * 1 2 3 27 27 H 1.07996 * 119.99553 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47584 * 5.00122 * 3 2 1 29 29 H 1.08999 * 109.46620 * 244.99708 * 3 2 1 30 30 H 1.09008 * 109.47388 * 59.99856 * 4 3 2 31 31 H 1.09000 * 109.47100 * 299.99928 * 4 3 2 32 32 H 1.09003 * 109.46813 * 59.99567 * 5 4 3 33 33 H 1.09001 * 109.46927 * 300.00330 * 5 4 3 34 34 H 0.97000 * 119.99717 * 5.52573 * 8 6 5 35 35 H 1.08003 * 119.99520 * 359.97438 * 10 9 8 36 36 H 1.07995 * 119.89520 * 179.97438 * 11 10 9 37 37 H 1.08001 * 119.89265 * 179.74764 * 12 11 10 38 38 H 1.08006 * 120.00386 * 180.02562 * 13 12 11 39 39 H 1.09003 * 109.46737 * 300.00429 * 16 15 14 40 40 H 1.09002 * 109.46929 * 59.99775 * 16 15 14 41 41 H 0.96998 * 119.99750 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8005 2.6579 1.1813 6 6 4.7570 2.6857 2.3454 7 8 4.8207 1.7388 3.1009 8 7 5.5418 3.7626 2.5473 9 6 6.5120 3.7430 3.5583 10 6 7.0330 2.5360 3.9988 11 6 7.9897 2.5189 4.9967 12 6 8.4308 3.7033 5.5582 13 6 7.9174 4.9112 5.1257 14 6 6.9567 4.9381 4.1246 15 16 6.3006 6.4766 3.5703 16 6 7.1804 7.6881 4.5944 17 6 6.7225 9.0778 4.2337 18 1 5.9763 9.2181 3.4655 19 6 7.2559 10.1700 4.8844 20 7 8.1648 9.9992 5.8195 21 14 6.6876 11.8925 4.4378 22 1 5.5273 12.2665 5.2858 23 1 7.7966 12.8539 4.6644 24 1 6.2874 11.9266 3.0081 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4025 -0.9314 30 1 3.7401 0.5065 1.0920 31 1 2.4773 1.2355 2.1130 32 1 3.0958 3.4846 1.2706 33 1 4.3583 2.7550 0.2499 34 1 5.4351 4.5513 1.9927 35 1 6.6907 1.6090 3.5629 36 1 8.3940 1.5776 5.3387 37 1 9.1754 3.6837 6.3403 38 1 8.2645 5.8343 5.5662 39 1 6.9684 7.4968 5.6464 40 1 8.2527 7.6022 4.4184 41 1 8.5403 10.7677 6.2770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175603917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:44 Heat of formation + Delta-G solvation = -13.422574 kcal Electronic energy + Delta-G solvation = -21163.783065 eV Core-core repulsion = 17941.427215 eV Total energy + Delta-G solvation = -3222.355850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44558 -38.25228 -36.25163 -34.66082 -33.29650 -32.68639 -30.75856 -29.60046 -28.63182 -27.25654 -23.69864 -22.95622 -22.63586 -21.46160 -20.29842 -19.91321 -17.95430 -16.99680 -16.66926 -16.30575 -16.17385 -15.41677 -15.07062 -14.62663 -14.42493 -14.30138 -13.82156 -13.68205 -13.41033 -13.06082 -13.00671 -12.55869 -12.41026 -12.26161 -12.01569 -11.81427 -11.74458 -11.25308 -11.18117 -10.98527 -10.94845 -10.79350 -10.40304 -10.09079 -9.73977 -9.68495 -9.58411 -9.24227 -9.18634 -8.67628 -8.00128 -6.61932 -6.31122 -4.37201 1.48954 1.68406 1.99381 2.35544 2.64943 3.11967 3.19209 3.25473 3.29173 3.57409 4.09477 4.25466 4.47356 4.53013 4.71539 4.92508 4.99443 5.06464 5.19803 5.25263 5.30343 5.35672 5.40667 5.51993 5.58281 5.64312 5.78771 5.82763 5.88894 6.07922 6.20906 6.34479 6.45645 6.48302 6.55716 6.71109 6.85329 6.90718 6.94138 7.28082 7.48195 7.61252 7.84335 8.12537 8.63620 9.27029 10.79985 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.002977 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.578102 B = 9401.988189 C =11138.294346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.097 4.097 4 C -0.099 4.099 5 C -0.141 4.141 6 C 0.512 3.488 7 O -0.526 6.526 8 N -0.662 5.662 9 C 0.150 3.850 10 C -0.119 4.119 11 C -0.122 4.122 12 C -0.119 4.119 13 C -0.115 4.115 14 C -0.097 4.097 15 S -0.172 6.172 16 C 0.078 3.922 17 C -0.520 4.520 18 H 0.068 0.932 19 C 0.068 3.932 20 N -0.888 5.888 21 Si 0.909 3.091 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.270 1.270 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.414 0.586 35 H 0.143 0.857 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.181 -16.257 -9.378 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.134 4.134 4 C -0.137 4.137 5 C -0.181 4.181 6 C 0.300 3.700 7 O -0.402 6.402 8 N -0.306 5.306 9 C 0.049 3.951 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.140 4.140 13 C -0.139 4.139 14 C -0.212 4.212 15 S 0.074 5.926 16 C -0.068 4.068 17 C -0.559 4.559 18 H 0.086 0.914 19 C -0.137 4.137 20 N -0.526 5.526 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.209 1.209 24 H -0.195 1.195 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.251 0.749 35 H 0.160 0.840 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.153 0.847 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.920 -16.482 -9.641 20.672 hybrid contribution 0.738 1.167 0.666 1.533 sum -7.182 -15.315 -8.975 19.149 Atomic orbital electron populations 1.23861 0.96007 1.01817 1.01796 1.22960 0.96023 0.98578 0.99313 1.20807 0.98257 0.95555 0.98754 1.21285 0.97702 0.95975 0.98739 1.21722 0.98279 1.01099 0.97010 1.20860 0.80662 0.82022 0.86481 1.90658 1.67519 1.35586 1.46422 1.43618 1.34320 1.18387 1.34244 1.17250 0.92458 0.92821 0.92546 1.21202 0.96925 0.97056 0.98841 1.20950 0.97941 0.97885 0.97593 1.21031 1.00402 0.92155 1.00368 1.21228 0.96753 0.99245 0.96692 1.21811 1.02187 0.96883 1.00355 1.84986 1.56818 0.96258 1.54543 1.21363 0.97000 0.93001 0.95485 1.20602 1.24695 0.88491 1.22145 0.91359 1.24955 0.94577 0.99597 0.94532 1.69943 1.27322 1.31480 1.23822 0.86318 0.78409 0.82633 0.79111 1.20248 1.20860 1.19506 0.88588 0.88640 0.87393 0.91301 0.90829 0.90976 0.90915 0.88396 0.88436 0.74879 0.83966 0.86165 0.86126 0.84733 0.93711 0.93711 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.41 14.32 29.01 0.42 -1.00 16 2 C -0.15 -1.13 9.52 -36.03 -0.34 -1.47 16 3 C -0.10 -0.69 5.66 -27.88 -0.16 -0.85 16 4 C -0.10 -0.87 4.49 -26.73 -0.12 -0.99 16 5 C -0.14 -1.25 5.70 -27.88 -0.16 -1.41 16 6 C 0.51 6.81 7.64 -10.99 -0.08 6.72 16 7 O -0.53 -8.52 13.15 5.54 0.07 -8.45 16 8 N -0.66 -9.59 5.17 -9.71 -0.05 -9.64 16 9 C 0.15 2.58 6.44 -83.43 -0.54 2.05 16 10 C -0.12 -1.94 8.72 -39.42 -0.34 -2.28 16 11 C -0.12 -1.83 10.04 -39.55 -0.40 -2.22 16 12 C -0.12 -1.88 10.04 -39.57 -0.40 -2.28 16 13 C -0.11 -2.12 9.36 -39.40 -0.37 -2.49 16 14 C -0.10 -1.85 6.12 -38.90 -0.24 -2.09 16 15 S -0.17 -3.55 20.55 -107.50 -2.21 -5.76 16 16 C 0.08 1.94 4.09 36.00 0.15 2.09 16 17 C -0.52 -13.97 9.13 -34.44 -0.31 -14.29 16 18 H 0.07 1.81 7.71 -52.48 -0.40 1.41 16 19 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 20 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 21 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H 0.10 0.64 7.84 -52.49 -0.41 0.23 16 26 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 27 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 28 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.68 8.10 -51.92 -0.42 0.26 16 31 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.41 5.44 7.65 -40.82 -0.31 5.13 16 35 H 0.14 2.28 5.79 -52.48 -0.30 1.98 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.13 2.64 5.88 -52.48 -0.31 2.33 16 39 H 0.04 1.17 7.75 -51.92 -0.40 0.76 16 40 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 359.06 15.07 5.41 5.41 Total: -1.00 -29.97 359.06 -9.94 -39.91 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.89 Total: 5.91 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -2.99 Total: -18.76 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.69 Total: -33.84 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.21 Total: -5.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.97 -9.94 -39.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175603917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.490 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds