Wall clock time and date at job start Tue Mar 31 2020 08:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99714 * 2 1 4 4 C 1.52999 * 109.46939 * 125.00349 * 3 2 1 5 5 C 1.53002 * 109.47363 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47513 * 179.97438 * 5 4 3 7 7 O 1.21297 * 119.99898 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00342 * 180.02562 * 6 5 4 9 9 C 1.40134 * 120.00068 * 185.53129 * 8 6 5 10 10 C 1.38648 * 120.10201 * 24.81560 * 9 8 6 11 11 C 1.38254 * 120.00935 * 180.02562 * 10 9 8 12 12 C 1.38304 * 120.20737 * 359.97261 * 11 10 9 13 13 C 1.38191 * 120.20073 * 0.02728 * 12 11 10 14 14 C 1.38782 * 119.99201 * 359.97438 * 13 12 11 15 15 S 1.76198 * 120.10682 * 180.02562 * 14 13 12 16 16 C 1.81399 * 103.00125 * 359.95629 * 15 14 13 17 17 C 1.50695 * 109.47411 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99843 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00270 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99816 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47151 * 90.00061 * 21 19 17 23 23 H 1.48508 * 109.46772 * 209.99719 * 21 19 17 24 24 H 1.48500 * 109.47230 * 329.99694 * 21 19 17 25 25 H 1.07999 * 119.99905 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99922 * 180.02562 * 1 2 3 27 27 H 1.07996 * 119.99553 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47584 * 5.00122 * 3 2 1 29 29 H 1.08999 * 109.46620 * 244.99708 * 3 2 1 30 30 H 1.09008 * 109.47388 * 59.99856 * 4 3 2 31 31 H 1.09000 * 109.47100 * 299.99928 * 4 3 2 32 32 H 1.09003 * 109.46813 * 59.99567 * 5 4 3 33 33 H 1.09001 * 109.46927 * 300.00330 * 5 4 3 34 34 H 0.97000 * 119.99717 * 5.52573 * 8 6 5 35 35 H 1.08003 * 119.99520 * 359.97438 * 10 9 8 36 36 H 1.07995 * 119.89520 * 179.97438 * 11 10 9 37 37 H 1.08001 * 119.89265 * 179.74764 * 12 11 10 38 38 H 1.08006 * 120.00386 * 180.02562 * 13 12 11 39 39 H 1.09003 * 109.46737 * 300.00429 * 16 15 14 40 40 H 1.09002 * 109.46929 * 59.99775 * 16 15 14 41 41 H 0.96998 * 119.99750 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8005 2.6579 1.1813 6 6 4.7570 2.6857 2.3454 7 8 4.8207 1.7388 3.1009 8 7 5.5418 3.7626 2.5473 9 6 6.5120 3.7430 3.5583 10 6 7.0330 2.5360 3.9988 11 6 7.9897 2.5189 4.9967 12 6 8.4308 3.7033 5.5582 13 6 7.9174 4.9112 5.1257 14 6 6.9567 4.9381 4.1246 15 16 6.3006 6.4766 3.5703 16 6 7.1804 7.6881 4.5944 17 6 6.7225 9.0778 4.2337 18 1 5.9763 9.2181 3.4655 19 6 7.2559 10.1700 4.8844 20 7 8.1648 9.9992 5.8195 21 14 6.6876 11.8925 4.4378 22 1 5.5273 12.2665 5.2858 23 1 7.7966 12.8539 4.6644 24 1 6.2874 11.9266 3.0081 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4025 -0.9314 30 1 3.7401 0.5065 1.0920 31 1 2.4773 1.2355 2.1130 32 1 3.0958 3.4846 1.2706 33 1 4.3583 2.7550 0.2499 34 1 5.4351 4.5513 1.9927 35 1 6.6907 1.6090 3.5629 36 1 8.3940 1.5776 5.3387 37 1 9.1754 3.6837 6.3403 38 1 8.2645 5.8343 5.5662 39 1 6.9684 7.4968 5.6464 40 1 8.2527 7.6022 4.4184 41 1 8.5403 10.7677 6.2770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175603917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:43 Heat of formation + Delta-G solvation = -28.374831 kcal Electronic energy + Delta-G solvation = -21164.431444 eV Core-core repulsion = 17941.427215 eV Total energy + Delta-G solvation = -3223.004228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.60949 -39.48831 -36.91020 -35.88249 -35.32761 -33.40168 -32.15424 -30.83591 -30.56754 -28.03492 -25.49309 -24.25434 -23.86219 -22.50580 -21.23538 -20.61665 -19.37282 -18.41112 -18.05802 -17.84217 -17.02203 -16.81681 -16.25872 -16.02421 -15.53678 -15.42005 -14.91983 -14.79280 -14.66958 -14.58465 -14.34552 -14.25682 -13.88613 -13.28080 -13.14852 -12.79551 -12.77263 -12.60888 -12.53362 -12.48041 -11.90802 -11.75451 -11.65461 -11.60199 -11.53393 -11.00089 -10.89186 -10.78953 -10.52399 -10.16762 -9.31681 -8.36643 -8.20253 -6.51226 0.18387 0.32373 0.75832 1.40832 1.41564 1.43883 1.53503 1.56125 1.76354 2.06268 2.34826 2.77196 2.98792 3.60350 3.84644 3.88341 4.07610 4.13582 4.30733 4.37741 4.38115 4.47819 4.49984 4.65782 4.68813 4.74366 4.84647 4.85624 4.90321 4.96071 5.08705 5.15744 5.24169 5.28221 5.39993 5.46166 5.51814 5.54828 5.80467 5.80973 5.93548 5.99912 6.36150 6.55963 7.03531 7.17762 8.75386 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.002977 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.578102 B = 9401.988189 C =11138.294346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C -0.091 4.091 4 C -0.094 4.094 5 C -0.133 4.133 6 C 0.509 3.491 7 O -0.556 6.556 8 N -0.662 5.662 9 C 0.149 3.851 10 C -0.127 4.127 11 C -0.106 4.106 12 C -0.119 4.119 13 C -0.132 4.132 14 C -0.125 4.125 15 S -0.152 6.152 16 C 0.082 3.918 17 C -0.541 4.541 18 H 0.069 0.931 19 C 0.016 3.984 20 N -0.922 5.922 21 Si 0.978 3.022 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.261 1.261 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.420 0.580 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.148 0.852 38 H 0.112 0.888 39 H 0.019 0.981 40 H 0.022 0.978 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 -17.001 -10.693 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.182 4.182 3 C -0.128 4.128 4 C -0.132 4.132 5 C -0.172 4.172 6 C 0.300 3.700 7 O -0.434 6.434 8 N -0.307 5.307 9 C 0.048 3.952 10 C -0.148 4.148 11 C -0.127 4.127 12 C -0.139 4.139 13 C -0.156 4.156 14 C -0.240 4.240 15 S 0.092 5.908 16 C -0.066 4.066 17 C -0.580 4.580 18 H 0.087 0.913 19 C -0.185 4.185 20 N -0.560 5.560 21 Si 0.801 3.199 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.185 1.185 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.127 0.873 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.258 0.742 35 H 0.166 0.834 36 H 0.176 0.824 37 H 0.166 0.834 38 H 0.130 0.870 39 H 0.037 0.963 40 H 0.040 0.960 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.740 -17.249 -10.972 22.233 hybrid contribution 1.004 1.202 1.101 1.914 sum -7.737 -16.047 -9.871 20.366 Atomic orbital electron populations 1.24021 0.96076 1.02441 1.01256 1.23089 0.96327 0.98948 0.99819 1.20769 0.98011 0.95590 0.98436 1.21218 0.97638 0.95671 0.98669 1.21804 0.97724 1.01722 0.95968 1.21695 0.80399 0.80882 0.87015 1.90637 1.68419 1.36552 1.47786 1.43745 1.34054 1.19192 1.33692 1.17424 0.92649 0.92360 0.92765 1.21432 0.97277 0.96772 0.99368 1.21384 0.96362 0.99021 0.95969 1.21311 1.00587 0.91255 1.00774 1.21227 0.97509 0.99707 0.97201 1.21818 1.03813 0.96407 1.01976 1.84543 1.56419 0.96206 1.53613 1.20997 0.96270 0.94297 0.95019 1.20951 1.24907 0.89746 1.22360 0.91286 1.25921 0.94450 1.03914 0.94222 1.70058 1.28369 1.32825 1.24780 0.85248 0.78115 0.77307 0.79227 1.19515 1.20214 1.18547 0.88154 0.87972 0.87255 0.90670 0.89444 0.91794 0.92843 0.86572 0.85632 0.74230 0.83404 0.82448 0.83420 0.86979 0.96281 0.95962 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.58 14.32 67.77 0.97 -1.61 16 2 C -0.16 -2.21 9.52 25.64 0.24 -1.97 16 3 C -0.09 -1.10 5.66 29.85 0.17 -0.93 16 4 C -0.09 -1.51 4.49 30.59 0.14 -1.37 16 5 C -0.13 -2.04 5.70 29.85 0.17 -1.87 16 6 C 0.51 12.86 7.64 87.66 0.67 13.53 16 7 O -0.56 -17.50 13.15 -3.08 -0.04 -17.54 16 8 N -0.66 -18.55 5.17 -303.01 -1.57 -20.12 16 9 C 0.15 5.06 6.44 38.22 0.25 5.31 16 10 C -0.13 -3.95 8.72 22.37 0.20 -3.76 16 11 C -0.11 -2.93 10.04 22.29 0.22 -2.71 16 12 C -0.12 -3.62 10.04 22.27 0.22 -3.39 16 13 C -0.13 -5.01 9.36 22.39 0.21 -4.80 16 14 C -0.12 -4.83 6.12 22.71 0.14 -4.69 16 15 S -0.15 -6.45 20.55 -56.49 -1.16 -7.61 16 16 C 0.08 4.25 4.09 71.23 0.29 4.54 16 17 C -0.54 -29.80 9.13 25.60 0.23 -29.56 16 18 H 0.07 3.70 7.71 -2.91 -0.02 3.68 16 19 C 0.02 0.90 5.46 84.65 0.46 1.36 16 20 N -0.92 -53.10 13.29 21.45 0.28 -52.81 16 21 Si 0.98 42.28 29.54 68.60 2.03 44.31 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 25 H 0.10 1.17 7.84 -2.91 -0.02 1.15 16 26 H 0.10 1.13 8.06 -2.91 -0.02 1.11 16 27 H 0.11 1.40 8.06 -2.91 -0.02 1.38 16 28 H 0.07 0.83 7.79 -2.39 -0.02 0.81 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 1.13 8.10 -2.38 -0.02 1.11 16 31 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 32 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.42 10.58 7.65 -92.71 -0.71 9.87 16 35 H 0.15 4.50 5.79 -2.91 -0.02 4.48 16 36 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 38 H 0.11 4.71 5.88 -2.91 -0.02 4.69 16 39 H 0.02 1.06 7.75 -2.39 -0.02 1.04 16 40 H 0.02 1.22 7.75 -2.39 -0.02 1.20 16 41 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -66.18 359.06 4.44 -61.74 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.32 Total: 23.96 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 4.58 Total: -31.93 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -1.28 Total: -72.93 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.04 Total: -17.54 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: -6.45 SS G_CDS: -1.16 Total: -7.61 kcal Total: -66.18 4.44 -61.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175603917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.362 kcal (2) G-P(sol) polarization free energy of solvation -66.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds