Wall clock time and date at job start Tue Mar 31 2020 08:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34343 * 126.43340 * 2 1 4 4 C 1.34474 * 108.20864 * 180.29017 * 3 2 1 5 5 C 1.47824 * 125.48987 * 179.73893 * 4 3 2 6 6 C 1.41083 * 126.27671 * 359.70656 * 5 4 3 7 7 N 1.30598 * 108.04595 * 179.81919 * 6 5 4 8 8 N 1.39986 * 108.61000 * 0.44831 * 7 6 5 9 9 C 1.46494 * 125.84405 * 179.74658 * 8 7 6 10 10 C 1.34638 * 108.30889 * 359.70980 * 8 7 6 11 11 N 1.30930 * 109.02076 * 359.73212 * 4 3 2 12 12 C 1.36000 * 108.38348 * 0.02562 * 11 4 3 13 13 C 1.47286 * 126.37309 * 179.97438 * 12 11 4 14 14 O 1.21543 * 119.99992 * 180.02562 * 13 12 11 15 15 O 1.34777 * 120.00032 * 359.74497 * 13 12 11 16 16 C 1.45202 * 116.99833 * 180.27188 * 15 13 12 17 17 C 1.53008 * 109.46857 * 180.02562 * 16 15 13 18 18 C 1.50698 * 109.46887 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00085 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00005 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99822 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46972 * 60.00311 * 22 20 18 24 24 H 1.48500 * 109.46664 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47336 * 299.99808 * 22 20 18 26 26 H 1.09003 * 109.47200 * 270.15828 * 1 2 3 27 27 H 1.08998 * 109.47408 * 30.15961 * 1 2 3 28 28 H 1.09000 * 109.47236 * 150.15542 * 1 2 3 29 29 H 1.08004 * 125.97785 * 359.97438 * 6 5 4 30 30 H 1.08993 * 109.47639 * 269.95650 * 9 8 7 31 31 H 1.09001 * 109.47600 * 29.96124 * 9 8 7 32 32 H 1.09009 * 109.47316 * 149.95695 * 9 8 7 33 33 H 1.07998 * 126.20557 * 179.97438 * 10 8 7 34 34 H 1.08998 * 109.47630 * 300.00494 * 16 15 13 35 35 H 1.09004 * 109.46770 * 60.00898 * 16 15 13 36 36 H 1.08998 * 109.47272 * 300.00551 * 17 16 15 37 37 H 1.08996 * 109.46984 * 60.00499 * 17 16 15 38 38 H 0.97002 * 119.99980 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3048 1.0808 0.0000 4 6 3.5821 0.6603 -0.0065 5 6 4.7736 1.5351 -0.0142 6 6 4.7734 2.9460 -0.0219 7 7 6.0150 3.3507 -0.0232 8 7 6.8510 2.2279 -0.0269 9 6 8.3157 2.2489 -0.0347 10 6 6.0783 1.1253 -0.0213 11 7 3.6003 -0.6489 -0.0047 12 6 2.3158 -1.0957 0.0025 13 6 1.8804 -2.5027 0.0062 14 8 0.6953 -2.7721 0.0122 15 8 2.7962 -3.4915 -0.0028 16 6 2.2949 -4.8543 -0.0046 17 6 3.4728 -5.8309 -0.0145 18 6 2.9525 -7.2452 -0.0170 19 1 1.8882 -7.4291 -0.0125 20 6 3.8351 -8.3045 -0.0251 21 7 5.1310 -8.0805 -0.0301 22 14 3.1902 -10.0576 -0.0275 23 1 2.3561 -10.2765 -1.2364 24 1 4.3334 -11.0054 -0.0372 25 1 2.3687 -10.2845 1.1886 26 1 -0.3634 0.0028 1.0277 27 1 -0.3634 0.8885 -0.5163 28 1 -0.3634 -0.8914 -0.5114 29 1 3.8992 3.5803 -0.0236 30 1 8.6737 2.2527 -1.0641 31 1 8.6691 3.1447 0.4761 32 1 8.6946 1.3649 0.4785 33 1 6.4258 0.1028 -0.0226 34 1 1.6926 -5.0211 0.8883 35 1 1.6821 -5.0147 -0.8917 36 1 4.0755 -5.6642 -0.9072 37 1 4.0853 -5.6703 0.8726 38 1 5.7520 -8.8257 -0.0362 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175853745.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:41 Heat of formation + Delta-G solvation = 9.808755 kcal Electronic energy + Delta-G solvation = -23426.457207 eV Core-core repulsion = 19658.815529 eV Total energy + Delta-G solvation = -3767.641678 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.44126 -41.55033 -39.69752 -36.15466 -34.92860 -33.98959 -33.29864 -32.69339 -30.75845 -30.25799 -27.99960 -26.88799 -25.16396 -23.93853 -22.56870 -21.74717 -20.94912 -20.73151 -20.07738 -18.24576 -17.29233 -17.11023 -16.37441 -15.89878 -15.89252 -15.69895 -15.60997 -15.04711 -14.57111 -14.50314 -13.78927 -13.43838 -13.34229 -13.23445 -13.05711 -12.95193 -12.72703 -12.59412 -12.32720 -11.49404 -11.25810 -11.18007 -11.03551 -10.75476 -10.71648 -10.69807 -10.34557 -9.95514 -9.86348 -9.62205 -9.60016 -9.28739 -8.41425 -8.25260 -6.07544 -4.11924 0.79689 1.32296 1.73159 1.89456 2.36340 2.72201 3.03359 3.31173 3.31807 3.35581 3.38948 3.81697 4.10439 4.40904 4.45831 4.55460 4.69132 4.74483 4.98861 5.01477 5.08317 5.12630 5.24074 5.28802 5.32277 5.50562 5.74008 5.85463 5.92302 6.06552 6.11957 6.13029 6.43682 6.66342 6.92084 7.15416 7.43547 7.59953 7.67078 7.89532 8.19092 8.27959 8.93443 9.52012 11.03958 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.002902 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.206093 B = 9644.987626 C =11493.112320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.040 3.960 3 O -0.192 6.192 4 C 0.281 3.719 5 C -0.179 4.179 6 C 0.085 3.915 7 N -0.294 5.294 8 N -0.367 5.367 9 C 0.098 3.902 10 C 0.127 3.873 11 N -0.438 5.438 12 C -0.045 4.045 13 C 0.547 3.453 14 O -0.511 6.511 15 O -0.334 6.334 16 C 0.074 3.926 17 C 0.025 3.975 18 C -0.526 4.526 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.194 0.806 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.195 0.805 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 24.163 0.039 24.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.016 4.016 3 O -0.080 6.080 4 C 0.074 3.926 5 C -0.192 4.192 6 C -0.104 4.104 7 N -0.113 5.113 8 N -0.146 5.146 9 C -0.043 4.043 10 C -0.024 4.024 11 N -0.167 5.167 12 C -0.163 4.163 13 C 0.391 3.609 14 O -0.401 6.401 15 O -0.249 6.249 16 C 0.001 3.999 17 C -0.012 4.012 18 C -0.565 4.565 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.131 0.869 29 H 0.211 0.789 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.212 0.788 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.123 24.581 0.036 24.672 hybrid contribution -1.398 -1.416 0.010 1.990 sum 0.725 23.164 0.047 23.176 Atomic orbital electron populations 1.20625 0.82241 1.05523 1.04826 1.23654 0.94912 0.82950 1.00066 1.84351 1.17522 1.35695 1.70397 1.22568 0.81566 0.88039 1.00445 1.17016 0.87868 0.91328 1.23010 1.24035 0.95743 0.92936 0.97656 1.77306 1.00811 1.08577 1.24623 1.48430 1.07363 1.03535 1.55319 1.22031 0.72879 1.05234 1.04124 1.22655 0.89678 0.93998 0.96046 1.71206 1.20976 1.07358 1.17119 1.20457 0.89139 0.93015 1.13731 1.19379 0.83994 0.84527 0.72981 1.90806 1.17707 1.84246 1.47345 1.86698 1.38680 1.17647 1.81834 1.23737 1.00299 0.74763 1.01055 1.19159 0.91988 0.91018 0.99002 1.20944 0.93220 0.90021 1.52271 0.92277 1.24982 0.94793 0.99465 0.94902 1.69969 1.01289 1.31850 1.49712 0.86531 0.78330 0.83650 0.78769 1.20073 1.21150 1.20067 0.88823 0.89926 0.86891 0.78948 0.90026 0.88804 0.88650 0.78773 0.92105 0.92104 0.95280 0.95274 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.87 36.00 0.36 -0.39 16 2 C 0.04 0.54 7.43 -35.05 -0.26 0.28 16 3 O -0.19 -2.46 10.75 5.14 0.06 -2.41 16 4 C 0.28 3.88 8.09 -14.02 -0.11 3.77 16 5 C -0.18 -2.04 6.09 -105.44 -0.64 -2.68 16 6 C 0.08 0.83 12.01 -17.00 -0.20 0.62 16 7 N -0.29 -3.04 12.53 30.84 0.39 -2.65 16 8 N -0.37 -3.22 3.99 -67.86 -0.27 -3.49 16 9 C 0.10 0.43 11.45 59.84 0.69 1.12 16 10 C 0.13 1.25 11.41 -16.86 -0.19 1.06 16 11 N -0.44 -7.33 11.35 -8.28 -0.09 -7.42 16 12 C -0.04 -0.75 7.03 -83.08 -0.58 -1.34 16 13 C 0.55 10.64 7.96 34.41 0.27 10.91 16 14 O -0.51 -9.97 14.57 -19.30 -0.28 -10.25 16 15 O -0.33 -7.34 10.23 -40.70 -0.42 -7.76 16 16 C 0.07 1.70 5.42 37.16 0.20 1.90 16 17 C 0.03 0.68 5.35 -27.88 -0.15 0.53 16 18 C -0.53 -14.97 9.11 -34.44 -0.31 -15.28 16 19 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 22 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.11 1.26 6.47 -51.93 -0.34 0.92 16 29 H 0.19 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.25 8.14 -51.92 -0.42 -0.18 16 33 H 0.20 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -35.11 346.15 -5.26 -40.36 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -4.53 Total: -4.36 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.04 Total: 2.14 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.76 Total: -39.45 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.64 Total: -20.42 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.11 -5.26 -40.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175853745.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.173 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds