Wall clock time and date at job start Tue Mar 31 2020 08:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33385 * 125.20484 * 2 1 4 4 C 1.38425 * 114.92441 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.54321 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.47030 * 106.61511 * 5 4 3 7 7 C 1.46898 * 110.99964 * 292.15897 * 6 5 4 8 8 C 1.50698 * 109.47190 * 297.99782 * 7 6 5 9 9 H 1.07995 * 120.00141 * 4.88541 * 8 7 6 10 10 C 1.37879 * 119.99895 * 184.88194 * 8 7 6 11 11 N 1.31511 * 120.00150 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99982 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47009 * 90.00078 * 12 10 8 14 14 H 1.48498 * 109.46773 * 210.00243 * 12 10 8 15 15 H 1.48503 * 109.46767 * 329.99979 * 12 10 8 16 16 C 1.46903 * 110.99673 * 168.20744 * 6 5 4 17 17 C 1.50702 * 109.47139 * 195.72868 * 16 6 5 18 18 C 1.34523 * 125.78963 * 89.99806 * 17 16 6 19 19 C 1.41375 * 106.84039 * 180.02562 * 18 17 16 20 20 C 1.34523 * 106.84364 * 359.97438 * 19 18 17 21 21 O 1.34300 * 108.41627 * 359.73734 * 20 19 18 22 22 C 1.33387 * 114.91715 * 359.97438 * 4 3 2 23 23 C 1.50702 * 125.20339 * 180.02562 * 22 4 3 24 24 S 1.75881 * 125.20253 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47308 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47373 * 299.98875 * 1 2 3 27 27 H 1.09009 * 109.46598 * 59.98455 * 1 2 3 28 28 H 1.07997 * 122.54140 * 0.05286 * 3 2 1 29 29 H 1.09004 * 109.47086 * 226.61480 * 5 4 3 30 30 H 1.08999 * 109.47027 * 346.61769 * 5 4 3 31 31 H 1.09000 * 109.47053 * 58.00026 * 7 6 5 32 32 H 1.09006 * 109.46574 * 178.00256 * 7 6 5 33 33 H 0.96994 * 120.00187 * 180.02562 * 11 10 8 34 34 H 1.08998 * 109.47566 * 315.72600 * 16 6 5 35 35 H 1.08999 * 109.47158 * 75.72753 * 16 6 5 36 36 H 1.08003 * 126.57599 * 0.03658 * 18 17 16 37 37 H 1.08000 * 126.58419 * 179.97438 * 19 18 17 38 38 H 1.07998 * 125.79086 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47276 * 184.86072 * 23 22 4 40 40 H 1.09002 * 109.47057 * 304.85710 * 23 22 4 41 41 H 1.09002 * 109.47606 * 64.85573 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 4.6623 1.9481 -0.0001 6 7 5.2860 2.0371 1.3270 7 6 4.3216 2.5048 2.3316 8 6 3.8512 3.8900 1.9698 9 1 4.1691 4.3432 1.0425 10 6 3.0149 4.5787 2.8226 11 7 2.6281 4.0270 3.9520 12 14 2.4312 6.2955 2.3737 13 1 1.1636 6.2023 1.6060 14 1 2.2026 7.0804 3.6134 15 1 3.4636 6.9684 1.5451 16 6 6.4729 2.9022 1.2938 17 6 7.2966 2.6726 2.5348 18 6 8.2838 1.7685 2.6676 19 6 8.7799 1.8943 3.9854 20 6 8.0666 2.8682 4.5791 21 8 7.1738 3.3401 3.6937 22 6 3.9750 -0.4477 -0.0005 23 6 5.3860 -0.9771 -0.0005 24 16 2.5209 -1.4372 -0.0006 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 -0.3633 0.5141 -0.8899 28 1 1.8670 2.0894 0.0008 29 1 5.4269 1.7353 -0.7473 30 1 4.1760 2.8943 -0.2371 31 1 3.4685 1.8270 2.3593 32 1 4.7997 2.5277 3.3110 33 1 2.0395 4.5113 4.5517 34 1 7.0698 2.6665 0.4128 35 1 6.1609 3.9457 1.2528 36 1 8.6309 1.0789 1.9122 37 1 9.5783 1.3190 4.4304 38 1 8.1938 3.2152 5.5939 39 1 5.3665 -2.0635 -0.0875 40 1 5.9325 -0.5549 -0.8438 41 1 5.8797 -0.6959 0.9298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176289374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:50 Heat of formation + Delta-G solvation = 46.155496 kcal Electronic energy + Delta-G solvation = -23097.515126 eV Core-core repulsion = 19877.742776 eV Total energy + Delta-G solvation = -3219.772351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.91393 -38.49462 -36.07901 -32.82245 -32.54774 -32.19150 -30.10808 -29.01899 -27.34651 -26.14065 -24.16533 -23.73381 -21.86822 -21.10011 -20.19981 -19.47131 -17.84000 -16.83904 -16.53629 -16.11137 -15.62597 -14.93909 -14.51297 -14.32008 -14.04485 -13.66696 -13.48935 -12.96696 -12.89695 -12.77703 -12.51641 -12.24592 -12.16571 -12.14424 -11.89290 -11.54631 -11.20905 -11.11277 -10.93446 -10.88902 -10.81192 -10.60106 -10.33544 -10.20184 -9.97632 -9.63327 -9.34343 -8.40488 -7.96140 -7.88571 -7.73646 -7.22972 -6.00269 -4.08547 1.52219 2.09898 2.34413 2.44498 3.12422 3.26254 3.31713 3.34077 3.35703 3.67618 4.40844 5.09269 5.27125 5.30780 5.37210 5.44934 5.54036 5.54559 5.55436 5.63790 5.79181 5.88585 5.90463 5.97111 6.04433 6.18643 6.25201 6.26428 6.32144 6.39246 6.50004 6.52615 6.70054 6.73015 6.96767 7.06474 7.19556 7.27021 7.56721 7.79944 7.93552 8.00056 8.21163 8.28750 8.99863 9.56910 11.05287 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.006582 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.723745 B = 4253.164869 C = 6408.370128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.192 4.192 3 C -0.104 4.104 4 C -0.078 4.078 5 C 0.118 3.882 6 N -0.529 5.529 7 C 0.190 3.810 8 C -0.546 4.546 9 H 0.055 0.945 10 C 0.070 3.930 11 N -0.885 5.885 12 Si 0.883 3.117 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.129 3.871 17 C 0.033 3.967 18 C -0.221 4.221 19 C -0.222 4.222 20 C -0.052 4.052 21 O -0.159 6.159 22 C -0.161 4.161 23 C -0.070 4.070 24 S 0.047 5.953 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.140 0.860 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.035 0.965 33 H 0.261 0.739 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.192 0.808 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.936 -7.661 -6.723 11.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.308 4.308 3 C -0.134 4.134 4 C -0.089 4.089 5 C -0.012 4.012 6 N -0.254 5.254 7 C 0.064 3.936 8 C -0.585 4.585 9 H 0.073 0.927 10 C -0.133 4.133 11 N -0.523 5.523 12 Si 0.711 3.289 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.200 1.200 16 C 0.001 3.999 17 C -0.018 4.018 18 C -0.241 4.241 19 C -0.241 4.241 20 C -0.121 4.121 21 O -0.053 6.053 22 C -0.278 4.278 23 C -0.129 4.129 24 S 0.311 5.689 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.158 0.842 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.209 0.791 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.460 -9.431 -6.373 12.225 hybrid contribution -0.325 3.133 -0.014 3.150 sum 4.136 -6.298 -6.387 9.877 Atomic orbital electron populations 1.20238 0.88503 1.01939 1.02712 1.24142 0.99243 0.95162 1.12296 1.20039 0.92617 0.99376 1.01381 1.18608 0.94199 0.93739 1.02395 1.20552 0.94012 0.95284 0.91312 1.62577 1.07522 1.49262 1.05993 1.19764 0.90066 0.93488 0.90262 1.21610 1.29801 1.01783 1.05325 0.92651 1.24887 0.96121 0.97499 0.94813 1.69945 1.34436 1.37625 1.10337 0.86743 0.79101 0.85108 0.77944 1.20729 1.21220 1.19993 1.20405 0.91309 0.98655 0.89508 1.22431 0.97750 0.94420 0.87228 1.21390 1.01335 1.03302 0.98026 1.21677 1.04291 1.02430 0.95706 1.23892 0.93180 0.99405 0.95613 1.84190 1.48748 1.52025 1.20332 1.24067 0.98018 0.95527 1.10185 1.20212 0.90219 0.99072 1.03416 1.83821 0.97898 1.10930 1.76270 0.92166 0.90735 0.91179 0.84242 0.92018 0.92657 0.94986 0.94692 0.92935 0.90004 0.91585 0.84241 0.84386 0.79090 0.92855 0.91405 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.38 36.01 0.37 -0.64 16 2 C -0.19 -3.19 6.51 -36.00 -0.23 -3.43 16 3 C -0.10 -1.94 9.41 -41.21 -0.39 -2.32 16 4 C -0.08 -1.42 4.35 -106.25 -0.46 -1.88 16 5 C 0.12 2.17 4.56 -4.98 -0.02 2.14 16 6 N -0.53 -10.75 4.64 -238.96 -1.11 -11.86 16 7 C 0.19 4.78 4.82 -4.98 -0.02 4.76 16 8 C -0.55 -14.43 7.30 -34.44 -0.25 -14.68 16 9 H 0.06 1.43 5.97 -52.49 -0.31 1.12 16 10 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 11 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 12 Si 0.88 21.18 29.54 -169.99 -5.02 16.15 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 C 0.13 2.42 5.35 -4.97 -0.03 2.39 16 17 C 0.03 0.64 6.10 -35.62 -0.22 0.42 16 18 C -0.22 -3.70 10.81 -39.70 -0.43 -4.13 16 19 C -0.22 -3.46 10.91 -39.70 -0.43 -3.90 16 20 C -0.05 -0.87 12.09 29.42 0.36 -0.52 16 21 O -0.16 -3.31 10.12 5.71 0.06 -3.25 16 22 C -0.16 -2.67 6.50 -36.00 -0.23 -2.91 16 23 C -0.07 -0.98 9.73 36.01 0.35 -0.63 16 24 S 0.05 0.73 23.31 -107.50 -2.51 -1.77 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.14 2.72 8.06 -52.49 -0.42 2.29 16 29 H 0.06 0.97 7.55 -51.93 -0.39 0.57 16 30 H 0.06 1.10 6.21 -51.93 -0.32 0.78 16 31 H 0.03 0.89 6.97 -51.93 -0.36 0.53 16 32 H 0.03 1.00 7.01 -51.93 -0.36 0.64 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.08 1.26 7.79 -51.93 -0.40 0.85 16 35 H 0.07 1.37 6.41 -51.93 -0.33 1.04 16 36 H 0.14 2.02 8.06 -52.48 -0.42 1.59 16 37 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.19 2.46 8.06 -52.49 -0.42 2.04 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.85 7.97 -51.93 -0.41 0.43 16 41 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -30.24 353.62 -10.10 -40.33 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.85 Total: 3.73 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -1.74 Total: -23.49 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.37 Total: -37.03 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: 0.06 Total: -3.25 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.24 -10.10 -40.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176289374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.489 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds