Wall clock time and date at job start Tue Mar 31 2020 08:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33385 * 125.20484 * 2 1 4 4 C 1.38425 * 114.92441 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.54321 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.47030 * 106.61511 * 5 4 3 7 7 C 1.46898 * 110.99964 * 292.15897 * 6 5 4 8 8 C 1.50698 * 109.47190 * 297.99782 * 7 6 5 9 9 H 1.07995 * 120.00141 * 4.88541 * 8 7 6 10 10 C 1.37879 * 119.99895 * 184.88194 * 8 7 6 11 11 N 1.31511 * 120.00150 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99982 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47009 * 90.00078 * 12 10 8 14 14 H 1.48498 * 109.46773 * 210.00243 * 12 10 8 15 15 H 1.48503 * 109.46767 * 329.99979 * 12 10 8 16 16 C 1.46903 * 110.99673 * 168.20744 * 6 5 4 17 17 C 1.50702 * 109.47139 * 195.72868 * 16 6 5 18 18 C 1.34523 * 125.78963 * 89.99806 * 17 16 6 19 19 C 1.41375 * 106.84039 * 180.02562 * 18 17 16 20 20 C 1.34523 * 106.84364 * 359.97438 * 19 18 17 21 21 O 1.34300 * 108.41627 * 359.73734 * 20 19 18 22 22 C 1.33387 * 114.91715 * 359.97438 * 4 3 2 23 23 C 1.50702 * 125.20339 * 180.02562 * 22 4 3 24 24 S 1.75881 * 125.20253 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47308 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47373 * 299.98875 * 1 2 3 27 27 H 1.09009 * 109.46598 * 59.98455 * 1 2 3 28 28 H 1.07997 * 122.54140 * 0.05286 * 3 2 1 29 29 H 1.09004 * 109.47086 * 226.61480 * 5 4 3 30 30 H 1.08999 * 109.47027 * 346.61769 * 5 4 3 31 31 H 1.09000 * 109.47053 * 58.00026 * 7 6 5 32 32 H 1.09006 * 109.46574 * 178.00256 * 7 6 5 33 33 H 0.96994 * 120.00187 * 180.02562 * 11 10 8 34 34 H 1.08998 * 109.47566 * 315.72600 * 16 6 5 35 35 H 1.08999 * 109.47158 * 75.72753 * 16 6 5 36 36 H 1.08003 * 126.57599 * 0.03658 * 18 17 16 37 37 H 1.08000 * 126.58419 * 179.97438 * 19 18 17 38 38 H 1.07998 * 125.79086 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47276 * 184.86072 * 23 22 4 40 40 H 1.09002 * 109.47057 * 304.85710 * 23 22 4 41 41 H 1.09002 * 109.47606 * 64.85573 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 4.6623 1.9481 -0.0001 6 7 5.2860 2.0371 1.3270 7 6 4.3216 2.5048 2.3316 8 6 3.8512 3.8900 1.9698 9 1 4.1691 4.3432 1.0425 10 6 3.0149 4.5787 2.8226 11 7 2.6281 4.0270 3.9520 12 14 2.4312 6.2955 2.3737 13 1 1.1636 6.2023 1.6060 14 1 2.2026 7.0804 3.6134 15 1 3.4636 6.9684 1.5451 16 6 6.4729 2.9022 1.2938 17 6 7.2966 2.6726 2.5348 18 6 8.2838 1.7685 2.6676 19 6 8.7799 1.8943 3.9854 20 6 8.0666 2.8682 4.5791 21 8 7.1738 3.3401 3.6937 22 6 3.9750 -0.4477 -0.0005 23 6 5.3860 -0.9771 -0.0005 24 16 2.5209 -1.4372 -0.0006 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 -0.3633 0.5141 -0.8899 28 1 1.8670 2.0894 0.0008 29 1 5.4269 1.7353 -0.7473 30 1 4.1760 2.8943 -0.2371 31 1 3.4685 1.8270 2.3593 32 1 4.7997 2.5277 3.3110 33 1 2.0395 4.5113 4.5517 34 1 7.0698 2.6665 0.4128 35 1 6.1609 3.9457 1.2528 36 1 8.6309 1.0789 1.9122 37 1 9.5783 1.3190 4.4304 38 1 8.1938 3.2152 5.5939 39 1 5.3665 -2.0635 -0.0875 40 1 5.9325 -0.5549 -0.8438 41 1 5.8797 -0.6959 0.9298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176289374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:50 Heat of formation + Delta-G solvation = 29.235949 kcal Electronic energy + Delta-G solvation = -23098.248813 eV Core-core repulsion = 19877.742776 eV Total energy + Delta-G solvation = -3220.506037 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.28309 -39.93050 -37.65199 -34.64125 -33.94998 -33.65137 -31.49918 -30.24105 -29.20199 -27.58525 -25.94435 -25.05361 -23.41361 -22.42600 -21.62323 -20.99278 -19.32671 -18.44663 -17.87910 -17.74659 -17.12916 -16.75503 -15.99670 -15.87743 -15.62177 -15.13435 -14.75963 -14.52850 -14.09110 -14.05090 -13.94761 -13.59923 -13.50442 -13.43420 -13.18656 -13.14992 -12.85091 -12.78165 -12.60616 -12.33404 -12.25519 -12.15540 -12.02008 -11.90555 -11.65305 -11.50983 -10.66761 -10.55672 -9.33234 -9.18203 -9.05122 -8.94729 -8.11106 -6.28335 0.19956 0.82936 0.98012 1.12460 1.33740 1.34923 1.44083 1.81693 1.95512 2.36923 2.39730 3.14975 3.57532 3.99580 4.03933 4.15050 4.29165 4.33746 4.41526 4.46338 4.56745 4.60894 4.64464 4.72580 4.77255 4.88999 4.94237 4.97023 5.05238 5.09701 5.18130 5.29060 5.33547 5.36027 5.41182 5.43778 5.61733 5.79918 5.80500 5.84075 6.06994 6.24156 6.47633 6.51725 6.91110 7.41210 8.91807 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.006582 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.723745 B = 4253.164869 C = 6408.370128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.198 4.198 3 C -0.135 4.135 4 C -0.104 4.104 5 C 0.123 3.877 6 N -0.522 5.522 7 C 0.217 3.783 8 C -0.542 4.542 9 H 0.059 0.941 10 C 0.015 3.985 11 N -0.925 5.925 12 Si 0.947 3.053 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.267 1.267 16 C 0.132 3.868 17 C -0.007 4.007 18 C -0.207 4.207 19 C -0.218 4.218 20 C -0.067 4.067 21 O -0.202 6.202 22 C -0.166 4.166 23 C -0.068 4.068 24 S 0.088 5.912 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.032 0.968 31 H -0.002 1.002 32 H -0.005 1.005 33 H 0.261 0.739 34 H 0.122 0.878 35 H 0.038 0.962 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.220 0.780 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.249 -8.989 -7.988 13.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.315 4.315 3 C -0.165 4.165 4 C -0.115 4.115 5 C -0.007 4.007 6 N -0.245 5.245 7 C 0.091 3.909 8 C -0.581 4.581 9 H 0.077 0.923 10 C -0.184 4.184 11 N -0.565 5.565 12 Si 0.772 3.228 13 H -0.199 1.199 14 H -0.212 1.212 15 H -0.192 1.192 16 C 0.004 3.996 17 C -0.058 4.058 18 C -0.227 4.227 19 C -0.236 4.236 20 C -0.135 4.135 21 O -0.099 6.099 22 C -0.283 4.283 23 C -0.126 4.126 24 S 0.352 5.648 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.135 0.865 29 H 0.114 0.886 30 H 0.051 0.949 31 H 0.016 0.984 32 H 0.013 0.987 33 H 0.070 0.930 34 H 0.140 0.860 35 H 0.056 0.944 36 H 0.184 0.816 37 H 0.191 0.809 38 H 0.237 0.763 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.789 -10.765 -7.666 14.428 hybrid contribution -0.684 3.446 0.392 3.535 sum 5.106 -7.319 -7.274 11.513 Atomic orbital electron populations 1.20336 0.86573 1.03452 1.03068 1.24581 1.00888 0.95404 1.10636 1.20026 0.93521 0.99073 1.03924 1.18649 0.93987 0.94557 1.04328 1.20572 0.94843 0.94555 0.90714 1.62474 1.06902 1.49084 1.06070 1.19178 0.89456 0.92298 0.89990 1.21863 1.28917 1.02291 1.05042 0.92342 1.25697 0.96518 1.01387 0.94788 1.70084 1.35533 1.39282 1.11555 0.85729 0.78878 0.80498 0.77659 1.19921 1.21194 1.19151 1.20493 0.90990 0.96654 0.91446 1.22646 0.99528 0.96318 0.87275 1.21773 0.99743 1.02128 0.99053 1.22104 1.04512 1.01917 0.95113 1.24665 0.92541 0.99806 0.96445 1.84147 1.50546 1.53554 1.21622 1.24479 0.99892 0.95279 1.08685 1.20277 0.88430 1.00432 1.03498 1.83602 0.96618 1.09379 1.75187 0.90032 0.91575 0.89584 0.86550 0.88645 0.94930 0.98356 0.98653 0.93049 0.86042 0.94417 0.81580 0.80918 0.76312 0.90816 0.89430 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.99 10.38 71.24 0.74 -1.25 16 2 C -0.20 -6.56 6.51 24.59 0.16 -6.40 16 3 C -0.14 -5.20 9.41 21.22 0.20 -5.00 16 4 C -0.10 -3.81 4.35 -20.92 -0.09 -3.91 16 5 C 0.12 4.50 4.56 85.56 0.39 4.89 16 6 N -0.52 -21.53 4.64 -909.94 -4.22 -25.75 16 7 C 0.22 11.53 4.82 85.56 0.41 11.94 16 8 C -0.54 -29.84 7.30 25.60 0.19 -29.65 16 9 H 0.06 3.12 5.97 -2.91 -0.02 3.11 16 10 C 0.02 0.87 5.46 84.66 0.46 1.34 16 11 N -0.92 -56.38 13.29 21.45 0.28 -56.09 16 12 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 13 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 14 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 16 C 0.13 4.94 5.35 85.56 0.46 5.40 16 17 C -0.01 -0.28 6.10 24.84 0.15 -0.13 16 18 C -0.21 -6.53 10.81 22.19 0.24 -6.29 16 19 C -0.22 -6.30 10.91 22.19 0.24 -6.06 16 20 C -0.07 -2.21 12.09 66.97 0.81 -1.40 16 21 O -0.20 -8.67 10.12 -2.47 -0.02 -8.70 16 22 C -0.17 -5.30 6.50 24.59 0.16 -5.14 16 23 C -0.07 -1.72 9.73 71.24 0.69 -1.02 16 24 S 0.09 2.60 23.31 -56.49 -1.32 1.28 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 29 H 0.10 2.81 7.55 -2.39 -0.02 2.79 16 30 H 0.03 1.33 6.21 -2.39 -0.01 1.32 16 31 H 0.00 -0.10 6.97 -2.39 -0.02 -0.11 16 32 H 0.00 -0.28 7.01 -2.38 -0.02 -0.30 16 33 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.12 3.49 7.79 -2.39 -0.02 3.47 16 35 H 0.04 1.62 6.41 -2.39 -0.02 1.60 16 36 H 0.17 4.21 8.06 -2.91 -0.02 4.19 16 37 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.22 5.42 8.06 -2.91 -0.02 5.40 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.09 1.88 7.97 -2.39 -0.02 1.86 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -68.88 353.62 2.99 -65.89 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 1.02 Total: 19.40 kcal Atomic # 6 Polarization: -47.90 SS G_CDS: 5.21 Total: -42.69 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -3.93 Total: -81.84 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.02 Total: -8.70 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.32 Total: 1.28 kcal Total: -68.88 2.99 -65.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176289374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.131 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds