Wall clock time and date at job start Tue Mar 31 2020 08:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.30303 * 2 1 4 4 N 1.46493 * 109.47481 * 65.71339 * 3 2 1 5 5 C 1.34778 * 120.00092 * 179.97438 * 4 3 2 6 6 O 1.21546 * 120.00241 * 0.02562 * 5 4 3 7 7 C 1.47890 * 120.00083 * 180.02562 * 5 4 3 8 8 C 1.39919 * 120.02231 * 0.02562 * 7 5 4 9 9 C 1.38334 * 120.35568 * 180.02562 * 8 7 5 10 10 C 1.37747 * 120.41414 * 0.28129 * 9 8 7 11 11 C 1.40754 * 120.03815 * 359.45056 * 10 9 8 12 12 C 1.41434 * 120.17741 * 180.27357 * 11 10 9 13 13 H 1.08000 * 120.00411 * 335.20745 * 12 11 10 14 14 C 1.39937 * 119.99916 * 155.20872 * 12 11 10 15 15 N 1.30836 * 119.99904 * 342.59461 * 14 12 11 16 16 Si 1.86796 * 120.00350 * 162.60141 * 14 12 11 17 17 H 1.48503 * 109.46665 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47568 * 119.99522 * 16 14 12 19 19 H 1.48505 * 109.47100 * 239.99948 * 16 14 12 20 20 C 1.38987 * 120.02616 * 180.02562 * 7 5 4 21 21 C 1.53702 * 110.43296 * 237.76744 * 2 1 3 22 22 C 1.52944 * 112.49051 * 238.26198 * 21 2 1 23 23 C 1.55151 * 108.96337 * 30.09388 * 22 21 2 24 24 S 1.83391 * 110.33957 * 122.16541 * 2 1 3 25 25 H 1.09006 * 109.47111 * 60.70410 * 1 2 3 26 26 H 1.09006 * 109.47375 * 180.70333 * 1 2 3 27 27 H 1.09007 * 109.47110 * 300.70508 * 1 2 3 28 28 H 1.09004 * 109.47033 * 305.71490 * 3 2 1 29 29 H 1.09004 * 109.47326 * 185.71505 * 3 2 1 30 30 H 0.96997 * 120.00203 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.82575 * 0.04552 * 8 7 5 32 32 H 1.08000 * 119.78870 * 180.02562 * 9 8 7 33 33 H 1.07999 * 119.98587 * 179.72071 * 10 9 8 34 34 H 0.96996 * 120.00123 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.20456 * 359.95546 * 20 7 5 36 36 H 1.09005 * 108.88722 * 359.04470 * 21 2 1 37 37 H 1.08994 * 108.89006 * 117.46212 * 21 2 1 38 38 H 1.09002 * 109.60078 * 270.16871 * 22 21 2 39 39 H 1.09000 * 109.45617 * 149.94034 * 22 21 2 40 40 H 1.08997 * 111.13540 * 200.65502 * 23 22 21 41 41 H 1.08998 * 111.16898 * 76.48889 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4349 0.0000 4 7 1.6976 2.0901 1.2589 5 6 2.0628 3.3678 1.4835 6 8 2.6933 3.9768 0.6414 7 6 1.6966 4.0291 2.7547 8 6 0.9713 3.3284 3.7246 9 6 0.6246 3.9404 4.9158 10 6 0.9840 5.2478 5.1587 11 6 1.7186 5.9667 4.1971 12 6 2.0942 7.3074 4.4458 13 1 1.5216 7.9096 5.1357 14 6 3.2078 7.8537 3.7980 15 7 4.0922 7.0665 3.2414 16 14 3.4318 9.7069 3.7282 17 1 2.3012 10.3688 4.4273 18 1 4.7085 10.0766 4.3905 19 1 3.4635 10.1486 2.3107 20 6 2.0725 5.3469 2.9866 21 6 2.0666 -0.7682 -1.2183 22 6 2.9674 -1.9388 -0.8216 23 6 2.5079 -2.4841 0.5563 24 16 2.1674 -0.9154 1.4556 25 1 -0.3634 0.5029 -0.8963 26 1 -0.3634 -1.0276 0.0126 27 1 -0.3634 0.5248 0.8836 28 1 1.6243 1.9839 -0.8344 29 1 3.1460 1.4209 -0.1023 30 1 1.1948 1.6041 1.9311 31 1 0.6809 2.3043 3.5426 32 1 0.0650 3.3908 5.6583 33 1 0.7058 5.7201 6.0892 34 1 4.8643 7.4451 2.7926 35 1 2.6330 5.8913 2.2411 36 1 1.2234 -1.1511 -1.7934 37 1 2.6354 -0.0820 -1.8457 38 1 4.0007 -1.5985 -0.7540 39 1 2.8902 -2.7266 -1.5709 40 1 3.3040 -3.0498 1.0405 41 1 1.6042 -3.0859 0.4600 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177278972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:53 Heat of formation + Delta-G solvation = -32.664524 kcal Electronic energy + Delta-G solvation = -22234.191888 eV Core-core repulsion = 19011.001645 eV Total energy + Delta-G solvation = -3223.190243 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.31501 -37.62746 -36.79210 -34.36638 -33.67446 -31.75950 -30.03677 -29.39376 -27.37186 -26.29595 -25.16855 -23.01183 -21.81433 -20.91333 -20.54383 -19.31994 -17.76877 -16.78134 -16.12754 -15.80946 -15.30526 -14.94694 -14.82903 -14.58826 -14.40698 -13.90867 -13.58647 -13.35851 -13.15682 -12.95148 -12.82352 -12.60111 -12.43804 -11.89191 -11.73113 -11.59284 -11.34540 -11.23484 -11.13221 -11.04714 -10.94819 -10.69799 -10.45829 -9.99169 -9.94584 -9.64888 -9.19434 -8.99295 -8.62451 -7.81709 -7.58993 -7.47930 -6.76550 -4.38032 1.60141 2.13413 2.25407 2.83899 3.10041 3.14986 3.17623 3.67873 3.90633 3.95072 4.22869 4.32424 4.49957 4.64937 4.68525 4.81518 4.90416 5.19560 5.28892 5.41823 5.51417 5.53339 5.61442 5.64781 5.67728 5.69962 5.82711 5.89852 6.01077 6.13859 6.32552 6.75106 6.85994 7.02261 7.05515 7.24707 7.42019 7.74009 7.79620 7.96089 8.12201 8.22409 8.54126 8.83731 8.87009 8.98200 10.18313 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.025281 B = 0.003275 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.264874 B = 8547.056600 C = 9112.446179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.025 4.025 3 C 0.145 3.855 4 N -0.732 5.732 5 C 0.565 3.435 6 O -0.547 6.547 7 C -0.128 4.128 8 C -0.215 4.215 9 C -0.098 4.098 10 C -0.211 4.211 11 C 0.099 3.901 12 C -0.460 4.460 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.784 5.784 16 Si 0.910 3.090 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.271 1.271 20 C -0.091 4.091 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.075 4.075 24 S -0.271 6.271 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.400 0.600 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.284 0.716 35 H 0.134 0.866 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.957 -16.297 -8.133 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.136 4.136 3 C 0.019 3.981 4 N -0.387 5.387 5 C 0.356 3.644 6 O -0.425 6.425 7 C -0.131 4.131 8 C -0.235 4.235 9 C -0.116 4.116 10 C -0.231 4.231 11 C 0.096 3.904 12 C -0.489 4.489 13 H 0.099 0.901 14 C -0.146 4.146 15 N -0.408 5.408 16 Si 0.734 3.266 17 H -0.184 1.184 18 H -0.199 1.199 19 H -0.196 1.196 20 C -0.112 4.112 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.224 4.224 24 S -0.044 6.044 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.237 0.763 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.104 -15.540 -7.699 17.618 hybrid contribution -0.152 0.064 -0.812 0.829 sum -3.256 -15.476 -8.511 17.959 Atomic orbital electron populations 1.22050 0.91475 1.02568 1.03118 1.23545 0.98892 0.97038 0.94082 1.21244 1.00400 0.88428 0.87982 1.45941 1.59612 1.13928 1.19238 1.18831 0.77827 0.80331 0.87391 1.90688 1.40196 1.64622 1.47042 1.19459 1.04136 0.96213 0.93270 1.20350 1.08321 0.98302 0.96574 1.20431 0.99978 0.95204 0.95972 1.21099 1.08451 0.94425 0.99138 1.17604 0.89848 0.93022 0.89917 1.19607 1.09990 0.96451 1.22886 0.90071 1.25966 0.94826 1.00617 0.93202 1.69806 1.07974 1.37340 1.25696 0.86241 0.79047 0.82298 0.79043 1.18365 1.19941 1.19588 1.21623 0.99619 0.92424 0.97487 1.22094 1.00259 0.96980 0.96759 1.22371 1.00840 0.97315 0.95717 1.24336 1.04333 0.96762 0.96951 1.88212 1.84929 1.12679 1.18545 0.91427 0.91795 0.91299 0.90800 0.90881 0.76330 0.89338 0.88900 0.88619 0.90534 0.84877 0.90514 0.89769 0.90247 0.90187 0.87734 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 8.26 37.16 0.31 -0.97 16 2 C -0.03 -0.27 0.84 -90.26 -0.08 -0.35 16 3 C 0.15 2.07 4.39 -4.05 -0.02 2.06 16 4 N -0.73 -12.81 4.97 -61.24 -0.30 -13.11 16 5 C 0.57 12.79 7.77 -12.31 -0.10 12.70 16 6 O -0.55 -14.00 16.33 5.33 0.09 -13.92 16 7 C -0.13 -3.11 5.87 -105.04 -0.62 -3.73 16 8 C -0.22 -4.72 9.55 -38.92 -0.37 -5.10 16 9 C -0.10 -2.15 10.01 -39.73 -0.40 -2.54 16 10 C -0.21 -5.12 9.78 -38.81 -0.38 -5.50 16 11 C 0.10 2.66 5.57 -106.87 -0.59 2.06 16 12 C -0.46 -12.27 9.05 -37.73 -0.34 -12.61 16 13 H 0.08 2.06 7.90 -52.49 -0.41 1.64 16 14 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 15 N -0.78 -21.11 10.97 55.55 0.61 -20.50 16 16 Si 0.91 19.02 29.59 -169.99 -5.03 13.98 16 17 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 20 C -0.09 -2.49 8.23 -38.44 -0.32 -2.81 16 21 C -0.12 -0.99 5.74 -26.39 -0.15 -1.14 16 22 C -0.12 -0.89 6.34 -25.62 -0.16 -1.05 16 23 C -0.08 -0.61 7.52 38.30 0.29 -0.32 16 24 S -0.27 -3.29 21.15 -107.50 -2.27 -5.57 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.75 7.28 -51.93 -0.38 0.37 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.40 6.53 5.12 -40.82 -0.21 6.32 16 31 H 0.09 1.67 6.38 -52.49 -0.33 1.33 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 35 H 0.13 3.91 5.76 -52.49 -0.30 3.61 16 36 H 0.08 0.51 7.62 -51.93 -0.40 0.11 16 37 H 0.08 0.67 7.62 -51.93 -0.40 0.28 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -30.60 345.64 -10.51 -41.11 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.79 Total: 10.33 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -3.02 Total: -17.54 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.30 Total: -33.61 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.98 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.27 Total: -5.57 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.60 -10.51 -41.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177278972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.445 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds