Wall clock time and date at job start Tue Mar 31 2020 08:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.30303 * 2 1 4 4 N 1.46493 * 109.47481 * 65.71339 * 3 2 1 5 5 C 1.34778 * 120.00092 * 179.97438 * 4 3 2 6 6 O 1.21546 * 120.00241 * 0.02562 * 5 4 3 7 7 C 1.47890 * 120.00083 * 180.02562 * 5 4 3 8 8 C 1.39919 * 120.02231 * 0.02562 * 7 5 4 9 9 C 1.38334 * 120.35568 * 180.02562 * 8 7 5 10 10 C 1.37747 * 120.41414 * 0.28129 * 9 8 7 11 11 C 1.40754 * 120.03815 * 359.45056 * 10 9 8 12 12 C 1.41434 * 120.17741 * 180.27357 * 11 10 9 13 13 H 1.08000 * 120.00411 * 335.20745 * 12 11 10 14 14 C 1.39937 * 119.99916 * 155.20872 * 12 11 10 15 15 N 1.30836 * 119.99904 * 342.59461 * 14 12 11 16 16 Si 1.86796 * 120.00350 * 162.60141 * 14 12 11 17 17 H 1.48503 * 109.46665 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47568 * 119.99522 * 16 14 12 19 19 H 1.48505 * 109.47100 * 239.99948 * 16 14 12 20 20 C 1.38987 * 120.02616 * 180.02562 * 7 5 4 21 21 C 1.53702 * 110.43296 * 237.76744 * 2 1 3 22 22 C 1.52944 * 112.49051 * 238.26198 * 21 2 1 23 23 C 1.55151 * 108.96337 * 30.09388 * 22 21 2 24 24 S 1.83391 * 110.33957 * 122.16541 * 2 1 3 25 25 H 1.09006 * 109.47111 * 60.70410 * 1 2 3 26 26 H 1.09006 * 109.47375 * 180.70333 * 1 2 3 27 27 H 1.09007 * 109.47110 * 300.70508 * 1 2 3 28 28 H 1.09004 * 109.47033 * 305.71490 * 3 2 1 29 29 H 1.09004 * 109.47326 * 185.71505 * 3 2 1 30 30 H 0.96997 * 120.00203 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.82575 * 0.04552 * 8 7 5 32 32 H 1.08000 * 119.78870 * 180.02562 * 9 8 7 33 33 H 1.07999 * 119.98587 * 179.72071 * 10 9 8 34 34 H 0.96996 * 120.00123 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.20456 * 359.95546 * 20 7 5 36 36 H 1.09005 * 108.88722 * 359.04470 * 21 2 1 37 37 H 1.08994 * 108.89006 * 117.46212 * 21 2 1 38 38 H 1.09002 * 109.60078 * 270.16871 * 22 21 2 39 39 H 1.09000 * 109.45617 * 149.94034 * 22 21 2 40 40 H 1.08997 * 111.13540 * 200.65502 * 23 22 21 41 41 H 1.08998 * 111.16898 * 76.48889 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4349 0.0000 4 7 1.6976 2.0901 1.2589 5 6 2.0628 3.3678 1.4835 6 8 2.6933 3.9768 0.6414 7 6 1.6966 4.0291 2.7547 8 6 0.9713 3.3284 3.7246 9 6 0.6246 3.9404 4.9158 10 6 0.9840 5.2478 5.1587 11 6 1.7186 5.9667 4.1971 12 6 2.0942 7.3074 4.4458 13 1 1.5216 7.9096 5.1357 14 6 3.2078 7.8537 3.7980 15 7 4.0922 7.0665 3.2414 16 14 3.4318 9.7069 3.7282 17 1 2.3012 10.3688 4.4273 18 1 4.7085 10.0766 4.3905 19 1 3.4635 10.1486 2.3107 20 6 2.0725 5.3469 2.9866 21 6 2.0666 -0.7682 -1.2183 22 6 2.9674 -1.9388 -0.8216 23 6 2.5079 -2.4841 0.5563 24 16 2.1674 -0.9154 1.4556 25 1 -0.3634 0.5029 -0.8963 26 1 -0.3634 -1.0276 0.0126 27 1 -0.3634 0.5248 0.8836 28 1 1.6243 1.9839 -0.8344 29 1 3.1460 1.4209 -0.1023 30 1 1.1948 1.6041 1.9311 31 1 0.6809 2.3043 3.5426 32 1 0.0650 3.3908 5.6583 33 1 0.7058 5.7201 6.0892 34 1 4.8643 7.4451 2.7926 35 1 2.6330 5.8913 2.2411 36 1 1.2234 -1.1511 -1.7934 37 1 2.6354 -0.0820 -1.8457 38 1 4.0007 -1.5985 -0.7540 39 1 2.8902 -2.7266 -1.5709 40 1 3.3040 -3.0498 1.0405 41 1 1.6042 -3.0859 0.4600 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177278972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:53 Heat of formation + Delta-G solvation = -49.802266 kcal Electronic energy + Delta-G solvation = -22234.935036 eV Core-core repulsion = 19011.001645 eV Total energy + Delta-G solvation = -3223.933391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.00118 -39.03093 -38.23243 -35.76669 -35.43274 -32.93225 -31.75396 -31.28775 -28.21075 -27.52170 -26.93218 -24.29946 -23.09218 -22.74812 -21.65969 -20.78748 -19.51604 -18.24274 -17.35859 -17.20155 -16.80317 -16.47968 -16.28677 -16.03126 -15.40326 -15.22284 -14.97902 -14.85836 -14.45573 -14.31470 -14.21697 -13.86588 -13.51172 -13.46767 -12.99873 -12.81266 -12.71276 -12.55797 -12.43363 -12.22173 -12.15554 -12.01293 -11.89598 -11.58692 -11.51542 -11.09390 -10.82487 -10.77544 -10.17536 -9.49137 -9.40701 -8.74526 -8.67191 -6.39358 0.35147 0.77444 0.98658 1.36406 1.38932 1.46212 1.53185 2.07276 2.19015 2.22498 2.77409 3.43046 3.51704 3.67893 3.74549 3.97375 4.00225 4.10924 4.31775 4.38562 4.46443 4.55702 4.57921 4.65676 4.71258 4.77467 4.86756 4.89131 5.00555 5.03236 5.07485 5.16457 5.19237 5.22891 5.29393 5.38926 5.50245 5.84007 5.90532 6.03342 6.26062 6.45767 6.63010 6.86695 6.92893 7.24491 8.30027 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.025281 B = 0.003275 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.264874 B = 8547.056600 C = 9112.446179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.008 4.008 3 C 0.140 3.860 4 N -0.709 5.709 5 C 0.561 3.439 6 O -0.587 6.587 7 C -0.139 4.139 8 C -0.200 4.200 9 C -0.094 4.094 10 C -0.216 4.216 11 C 0.068 3.932 12 C -0.496 4.496 13 H 0.085 0.915 14 C 0.028 3.972 15 N -0.826 5.826 16 Si 0.985 3.015 17 H -0.250 1.250 18 H -0.264 1.264 19 H -0.270 1.270 20 C -0.129 4.129 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.055 4.055 24 S -0.350 6.350 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.408 0.592 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.111 0.889 34 H 0.287 0.713 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 -18.662 -8.456 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 C 0.016 3.984 4 N -0.362 5.362 5 C 0.351 3.649 6 O -0.469 6.469 7 C -0.142 4.142 8 C -0.220 4.220 9 C -0.112 4.112 10 C -0.236 4.236 11 C 0.066 3.934 12 C -0.525 4.525 13 H 0.103 0.897 14 C -0.187 4.187 15 N -0.452 5.452 16 Si 0.805 3.195 17 H -0.174 1.174 18 H -0.189 1.189 19 H -0.195 1.195 20 C -0.149 4.149 21 C -0.161 4.161 22 C -0.159 4.159 23 C -0.202 4.202 24 S -0.123 6.123 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.246 0.754 31 H 0.143 0.857 32 H 0.155 0.845 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.585 -17.968 -8.008 20.199 hybrid contribution 0.237 0.561 -0.709 0.934 sum -4.348 -17.407 -8.716 19.947 Atomic orbital electron populations 1.22058 0.90259 1.03792 1.02926 1.23493 0.99561 0.94360 0.94406 1.21464 0.99809 0.90840 0.86321 1.45768 1.57917 1.12087 1.20471 1.18722 0.77816 0.81756 0.86613 1.90659 1.42202 1.65975 1.48061 1.19771 1.04011 0.95685 0.94778 1.20767 1.06018 0.99572 0.95595 1.20898 0.99154 0.94459 0.96701 1.21407 1.07581 0.95499 0.99098 1.17958 0.90994 0.93892 0.90542 1.19894 1.11039 0.97144 1.24403 0.89653 1.26898 0.93997 1.05546 0.92232 1.69906 1.08731 1.39539 1.26975 0.85118 0.79461 0.75894 0.78994 1.17358 1.18852 1.19497 1.21428 1.01919 0.93981 0.97579 1.22152 1.01356 0.97075 0.95499 1.22378 0.99930 0.97676 0.95951 1.24459 1.05478 0.94092 0.96208 1.88443 1.85554 1.16864 1.21476 0.90285 0.89835 0.92817 0.90446 0.92383 0.75377 0.85685 0.84453 0.87116 0.90293 0.88232 0.88050 0.89855 0.91290 0.87182 0.86936 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.26 71.98 0.59 -1.58 16 2 C -0.01 -0.16 0.84 -10.56 -0.01 -0.17 16 3 C 0.14 3.97 4.39 86.38 0.38 4.35 16 4 N -0.71 -24.71 4.97 -465.93 -2.31 -27.02 16 5 C 0.56 26.12 7.77 86.80 0.67 26.79 16 6 O -0.59 -31.62 16.33 -3.86 -0.06 -31.68 16 7 C -0.14 -6.95 5.87 -20.13 -0.12 -7.07 16 8 C -0.20 -8.47 9.55 22.70 0.22 -8.25 16 9 C -0.09 -3.94 10.01 22.18 0.22 -3.71 16 10 C -0.22 -10.42 9.78 22.77 0.22 -10.19 16 11 C 0.07 3.82 5.57 -21.32 -0.12 3.70 16 12 C -0.50 -27.48 9.05 23.47 0.21 -27.27 16 13 H 0.09 4.45 7.90 -2.91 -0.02 4.43 16 14 C 0.03 1.49 5.14 85.25 0.44 1.93 16 15 N -0.83 -47.05 10.97 21.83 0.24 -46.81 16 16 Si 0.99 40.24 29.59 68.60 2.03 42.27 16 17 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 18 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 20 C -0.13 -7.38 8.23 23.01 0.19 -7.19 16 21 C -0.12 -1.62 5.74 30.81 0.18 -1.44 16 22 C -0.12 -1.35 6.34 31.31 0.20 -1.15 16 23 C -0.05 -0.71 7.52 72.72 0.55 -0.17 16 24 S -0.35 -7.98 21.15 -56.49 -1.19 -9.18 16 25 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.05 1.06 7.28 -2.38 -0.02 1.04 16 28 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.41 12.86 5.12 -92.71 -0.47 12.38 16 31 H 0.13 4.33 6.38 -2.91 -0.02 4.32 16 32 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 33 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 34 H 0.29 14.99 8.30 -92.71 -0.77 14.22 16 35 H 0.10 6.33 5.76 -2.91 -0.02 6.31 16 36 H 0.10 0.90 7.62 -2.38 -0.02 0.88 16 37 H 0.08 1.15 7.62 -2.39 -0.02 1.14 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -71.56 345.64 3.09 -68.47 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: 0.56 Total: 35.37 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 3.83 Total: -31.42 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -2.07 Total: -73.83 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.06 Total: -31.68 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.19 Total: -9.18 kcal Total: -71.56 3.09 -68.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177278972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.668 kcal (2) G-P(sol) polarization free energy of solvation -71.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds