Wall clock time and date at job start Tue Mar 31 2020 08:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 3 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21637 * 120.00125 * 359.97438 * 14 13 3 16 16 C 1.47229 * 120.00378 * 180.02562 * 14 13 3 17 17 C 1.36145 * 127.22099 * 89.68063 * 16 14 13 18 18 C 1.50703 * 125.20327 * 359.96458 * 17 16 14 19 19 O 1.33952 * 109.58826 * 179.83311 * 17 16 14 20 20 C 1.34324 * 111.41432 * 0.45375 * 19 17 16 21 21 N 1.34201 * 133.43443 * 179.72615 * 20 19 17 22 22 C 1.30350 * 121.38101 * 180.02562 * 21 20 19 23 23 N 1.35604 * 122.39025 * 0.02650 * 22 21 20 24 24 H 0.97004 * 119.95664 * 179.97438 * 23 22 21 25 25 C 1.35301 * 120.06982 * 359.93019 * 23 22 21 26 26 O 1.21914 * 120.97626 * 180.02562 * 25 23 22 27 27 C 1.39521 * 107.67363 * 359.72826 * 20 19 17 28 28 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 30 30 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 31 31 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 32 32 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 33 33 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 34 34 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 35 35 H 1.08994 * 109.46870 * 89.99942 * 18 17 16 36 36 H 1.08997 * 109.46910 * 210.00404 * 18 17 16 37 37 H 1.09002 * 109.46823 * 329.99704 * 18 17 16 38 38 H 1.07996 * 118.80528 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4535 0.8896 1.3415 9 14 3.0960 0.1144 2.5731 10 1 2.8802 -1.3232 2.2702 11 1 3.7905 0.2462 3.8792 12 1 1.7851 0.8090 2.6374 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3417 2.6320 -0.4317 16 6 0.0457 3.3222 -2.6252 17 6 -0.5692 2.7508 -3.6971 18 6 -0.9741 1.3026 -3.7963 19 8 -0.7618 3.6735 -4.6489 20 6 -0.2880 4.8727 -4.2724 21 7 -0.2437 6.0752 -4.8665 22 6 0.2849 7.1073 -4.2713 23 7 0.8190 7.0336 -3.0270 24 1 1.2037 7.8243 -2.6174 25 6 0.8149 5.8587 -2.3561 26 8 1.2901 5.7738 -1.2366 27 6 0.2450 4.7341 -2.9905 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 5.8763 0.4948 2.1200 34 1 2.2721 2.1230 -1.9977 35 1 -1.9885 1.1821 -3.4161 36 1 -0.9365 0.9854 -4.8384 37 1 -0.2900 0.6928 -3.2060 38 1 0.2988 8.0555 -4.7882 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183807653.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:25 Heat of formation + Delta-G solvation = -50.690985 kcal Electronic energy + Delta-G solvation = -25451.385621 eV Core-core repulsion = 21681.120477 eV Total energy + Delta-G solvation = -3770.265144 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.18862 -41.86378 -40.75478 -38.80941 -37.17187 -35.00981 -34.70698 -34.31793 -33.06690 -32.45547 -29.58951 -28.55974 -26.10408 -25.13733 -24.56986 -23.97225 -22.02911 -21.26316 -20.44187 -19.97100 -19.02643 -18.50035 -18.21621 -17.55971 -17.31426 -16.76498 -16.50517 -16.33783 -16.08991 -15.71394 -15.29612 -15.06676 -14.86925 -14.43342 -14.36502 -14.06892 -13.77608 -13.72860 -13.64473 -13.19188 -12.95335 -12.77745 -12.42416 -11.88885 -11.74078 -11.72951 -11.50114 -11.37985 -11.31742 -11.13164 -10.92406 -10.87712 -9.88617 -9.25140 -8.41525 -6.47617 -0.55122 0.14679 0.78503 0.91364 1.23242 1.32430 1.43053 1.43993 1.57100 2.23496 2.27078 2.35502 2.93730 3.06017 3.18365 3.26033 3.80036 3.90017 4.12614 4.14722 4.21461 4.30632 4.42952 4.50513 4.56581 4.63863 4.79434 4.99579 5.01655 5.06923 5.11431 5.21717 5.36037 5.45021 5.51776 5.55542 5.61117 6.08320 6.44415 6.51407 6.61868 6.72620 7.12176 7.29249 8.74199 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018693 B = 0.004785 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.554447 B = 5849.889790 C = 6752.472872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 C 0.250 3.750 4 H 0.014 0.986 5 C -0.536 4.536 6 H 0.049 0.951 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.938 3.062 10 H -0.248 1.248 11 H -0.291 1.291 12 H -0.265 1.265 13 N -0.685 5.685 14 C 0.589 3.411 15 O -0.571 6.571 16 C -0.191 4.191 17 C 0.072 3.928 18 C -0.080 4.080 19 O -0.148 6.148 20 C 0.296 3.704 21 N -0.528 5.528 22 C 0.434 3.566 23 N -0.622 5.622 24 H 0.445 0.555 25 C 0.547 3.453 26 O -0.564 6.564 27 C -0.309 4.309 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.271 0.729 34 H 0.402 0.598 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.653 9.842 -17.618 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.173 4.173 3 C 0.145 3.855 4 H 0.032 0.968 5 C -0.574 4.574 6 H 0.067 0.933 7 C -0.169 4.169 8 N -0.572 5.572 9 Si 0.765 3.235 10 H -0.174 1.174 11 H -0.218 1.218 12 H -0.190 1.190 13 N -0.333 5.333 14 C 0.375 3.625 15 O -0.452 6.452 16 C -0.197 4.197 17 C 0.022 3.978 18 C -0.136 4.136 19 O -0.041 6.041 20 C 0.132 3.868 21 N -0.258 5.258 22 C 0.151 3.849 23 N -0.266 5.266 24 H 0.289 0.711 25 C 0.343 3.657 26 O -0.442 6.442 27 C -0.318 4.318 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.236 0.764 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.112 0.888 38 H 0.316 0.684 Dipole moment (debyes) X Y Z Total from point charges -14.285 9.318 -17.193 24.217 hybrid contribution 1.066 0.137 1.858 2.147 sum -13.219 9.455 -15.334 22.345 Atomic orbital electron populations 1.21816 0.94915 1.01108 1.01616 1.22176 0.96121 0.97418 1.01573 1.18870 0.93407 0.90155 0.83029 0.96835 1.21228 0.90189 1.38933 1.07052 0.93295 1.25564 0.95860 0.95781 0.99710 1.69979 1.10323 1.46112 1.30789 0.86010 0.79029 0.80316 0.78174 1.17360 1.21839 1.19039 1.45956 1.14803 1.55363 1.17143 1.17317 0.81933 0.77125 0.86098 1.90745 1.52905 1.60777 1.40766 1.20422 1.09425 0.93092 0.96767 1.23110 0.98373 0.92427 0.83930 1.20808 1.04183 0.81519 1.07053 1.83579 1.64293 1.15122 1.41133 1.19737 0.92465 0.86710 0.87857 1.67354 1.27745 0.95121 1.35584 1.26540 0.80176 0.98423 0.79749 1.44726 1.51529 1.13070 1.17318 0.71098 1.16425 0.79942 0.83791 0.85507 1.91060 1.48134 1.84709 1.20344 1.21116 1.15901 0.95523 0.99229 0.91179 0.94962 0.92443 0.90450 0.93508 0.91949 0.76382 0.87287 0.86003 0.88789 0.68385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 8.51 71.98 0.61 -4.72 16 2 C -0.13 -5.95 5.11 30.59 0.16 -5.80 16 3 C 0.25 12.85 1.83 44.25 0.08 12.93 16 4 H 0.01 0.81 6.63 -2.39 -0.02 0.79 16 5 C -0.54 -31.40 9.31 25.60 0.24 -31.16 16 6 H 0.05 3.09 7.98 -2.91 -0.02 3.06 16 7 C 0.03 1.81 5.45 84.66 0.46 2.27 16 8 N -0.93 -58.19 13.96 21.45 0.30 -57.90 16 9 Si 0.94 46.65 24.41 68.60 1.67 48.33 16 10 H -0.25 -11.25 6.84 99.48 0.68 -10.57 16 11 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 12 H -0.27 -13.39 6.52 99.48 0.65 -12.74 16 13 N -0.69 -30.96 5.02 -449.58 -2.26 -33.22 16 14 C 0.59 25.88 5.80 86.61 0.50 26.38 16 15 O -0.57 -28.79 14.24 -4.15 -0.06 -28.85 16 16 C -0.19 -6.90 6.06 -19.05 -0.12 -7.01 16 17 C 0.07 1.95 7.31 25.20 0.18 2.14 16 18 C -0.08 -1.48 10.21 71.24 0.73 -0.75 16 19 O -0.15 -3.80 10.51 0.66 0.01 -3.80 16 20 C 0.30 7.77 8.60 84.64 0.73 8.50 16 21 N -0.53 -9.31 10.42 -310.79 -3.24 -12.54 16 22 C 0.43 3.43 12.32 180.13 2.22 5.65 16 23 N -0.62 -9.45 5.29 -321.97 -1.70 -11.15 16 24 H 0.45 3.50 8.92 -92.71 -0.83 2.68 16 25 C 0.55 17.63 7.79 84.87 0.66 18.30 16 26 O -0.56 -24.96 17.98 -5.04 -0.09 -25.05 16 27 C -0.31 -10.30 6.39 -19.90 -0.13 -10.42 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.03 1.37 7.84 -2.39 -0.02 1.35 16 30 H 0.06 2.14 5.36 -2.39 -0.01 2.13 16 31 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 32 H 0.05 2.15 3.24 -2.39 -0.01 2.14 16 33 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 34 H 0.40 16.79 8.52 -92.71 -0.79 16.00 16 35 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.09 1.92 7.59 -2.39 -0.02 1.90 16 38 H 0.30 -2.54 8.06 -2.91 -0.02 -2.57 16 Total: -1.00 -94.23 322.00 0.41 -93.82 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -0.55 Total: 14.06 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 6.33 Total: 16.30 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -6.90 Total: -114.81 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -0.14 Total: -57.70 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.67 Total: 48.33 kcal Total: -94.23 0.41 -93.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183807653.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.128 kcal (2) G-P(sol) polarization free energy of solvation -94.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds