Wall clock time and date at job start Tue Mar 31 2020 08:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21627 * 120.00319 * 0.02562 * 14 13 3 16 16 C 1.47228 * 119.99918 * 180.02562 * 14 13 3 17 17 C 1.36139 * 127.22095 * 89.68320 * 16 14 13 18 18 C 1.50700 * 125.20478 * 0.02562 * 17 16 14 19 19 O 1.33953 * 109.59075 * 179.89012 * 17 16 14 20 20 C 1.34326 * 111.41345 * 0.39803 * 19 17 16 21 21 N 1.34212 * 133.43332 * 179.76996 * 20 19 17 22 22 C 1.30341 * 121.37312 * 179.97438 * 21 20 19 23 23 N 1.35600 * 122.40044 * 0.02562 * 22 21 20 24 24 H 0.96995 * 119.97059 * 179.97438 * 23 22 21 25 25 C 1.35317 * 120.06537 * 359.93772 * 23 22 21 26 26 O 1.21912 * 120.97182 * 180.02562 * 25 23 22 27 27 C 1.39510 * 107.67350 * 359.75868 * 20 19 17 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 35 35 H 1.08999 * 109.46935 * 89.99787 * 18 17 16 36 36 H 1.08996 * 109.47296 * 210.00027 * 18 17 16 37 37 H 1.08999 * 109.46862 * 330.00026 * 18 17 16 38 38 H 1.07995 * 118.79932 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3418 2.6318 0.4318 16 6 0.0459 3.3231 2.6248 17 6 0.2356 4.6278 2.9641 18 6 0.8952 5.6651 2.0924 19 8 -0.2565 4.8491 4.1901 20 6 -0.7774 3.7296 4.7190 21 7 -1.3681 3.4512 5.8916 22 6 -1.7977 2.2519 6.1671 23 7 -1.6766 1.2190 5.2970 24 1 -2.0087 0.3403 5.5387 25 6 -1.0937 1.4130 4.0913 26 8 -0.9767 0.4963 3.2962 27 6 -0.6242 2.7075 3.7820 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8292 -0.0604 -2.9503 34 1 2.2720 2.1231 1.9978 35 1 0.1413 6.1537 1.4752 36 1 1.3876 6.4076 2.7203 37 1 1.6339 5.1843 1.4511 38 1 -2.2664 2.0742 7.1237 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183807667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:27 Heat of formation + Delta-G solvation = -25.274228 kcal Electronic energy + Delta-G solvation = -25451.811302 eV Core-core repulsion = 21682.648311 eV Total energy + Delta-G solvation = -3769.162990 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.06377 -40.81491 -38.82115 -37.62955 -34.99295 -34.04862 -33.30794 -32.21752 -31.42307 -30.66864 -27.74881 -26.79940 -24.96179 -23.79295 -23.30115 -22.27550 -20.12160 -19.43933 -19.10981 -18.83482 -17.68642 -17.07506 -16.70081 -15.59682 -15.51961 -15.40295 -15.26415 -14.81205 -14.46032 -14.17809 -14.11493 -13.36667 -13.30042 -12.98187 -12.83317 -12.59405 -12.21604 -11.74584 -11.38138 -11.16977 -10.96404 -10.77158 -10.74075 -10.49275 -10.37829 -10.28634 -10.07470 -9.80303 -9.46525 -9.14055 -8.96366 -8.44812 -8.11937 -7.77463 -6.08074 -4.17700 0.34764 1.36279 1.82625 2.00418 2.39766 3.23699 3.26776 3.33216 3.34995 3.36536 3.83132 3.98962 4.24540 4.34235 4.48059 4.66376 5.10344 5.14135 5.22849 5.35547 5.43645 5.55005 5.78031 6.03274 6.10977 6.24369 6.57742 6.67536 6.69929 6.86017 7.23774 7.30992 7.35280 7.46185 7.53020 7.68570 7.72327 7.81146 7.96122 8.25212 8.68946 8.80526 9.13539 9.49079 10.97134 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018907 B = 0.004446 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.568546 B = 6296.186590 C = 6933.562718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.693 5.693 14 C 0.578 3.422 15 O -0.533 6.533 16 C -0.141 4.141 17 C 0.044 3.956 18 C -0.076 4.076 19 O -0.151 6.151 20 C 0.269 3.731 21 N -0.509 5.509 22 C 0.396 3.604 23 N -0.645 5.645 24 H 0.425 0.575 25 C 0.555 3.445 26 O -0.493 6.493 27 C -0.259 4.259 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.030 0.970 32 H 0.097 0.903 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.469 5.954 17.928 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.339 5.339 14 C 0.361 3.639 15 O -0.411 6.411 16 C -0.147 4.147 17 C -0.006 4.006 18 C -0.133 4.133 19 O -0.045 6.045 20 C 0.107 3.893 21 N -0.238 5.238 22 C 0.110 3.890 23 N -0.290 5.290 24 H 0.265 0.735 25 C 0.350 3.650 26 O -0.366 6.366 27 C -0.267 4.267 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.220 0.780 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.780 6.425 16.922 20.117 hybrid contribution 1.074 -1.148 0.035 1.572 sum -7.705 5.277 16.957 19.359 Atomic orbital electron populations 1.21880 0.98073 0.98204 1.01728 1.21888 0.92944 0.99457 1.02011 1.18858 0.94190 0.89431 0.80549 0.93155 1.21217 0.90607 1.39144 1.06244 0.92099 1.24879 0.98522 0.94813 0.95390 1.69912 1.35064 1.37531 1.09314 0.86463 0.84956 0.78423 0.77328 1.20600 1.21084 1.19872 1.46456 1.13991 1.54895 1.18586 1.16952 0.83052 0.79079 0.84836 1.90796 1.51367 1.59747 1.39192 1.20831 1.04564 0.93281 0.96016 1.22673 0.99884 0.95387 0.82663 1.20552 1.00561 0.95612 0.96539 1.83533 1.59894 1.32649 1.28442 1.19353 0.95528 0.83909 0.90534 1.67091 1.19542 1.19165 1.17956 1.24809 0.89441 0.80529 0.94269 1.44886 1.52824 1.14799 1.16503 0.73537 1.16209 0.78999 0.88674 0.81130 1.91084 1.54903 1.44158 1.46414 1.20973 1.13086 0.94810 0.97807 0.93712 0.92689 0.96162 0.95147 0.88487 0.92585 0.77960 0.88904 0.89550 0.87869 0.76156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.51 37.16 0.32 -3.26 16 2 C -0.12 -3.26 5.45 -26.74 -0.15 -3.41 16 3 C 0.27 7.09 2.24 -69.08 -0.15 6.94 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -25.05 11.30 55.43 0.63 -24.43 16 9 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.69 -15.51 5.02 -56.07 -0.28 -15.79 16 14 C 0.58 12.72 5.80 -12.61 -0.07 12.64 16 15 O -0.53 -13.57 14.24 5.25 0.07 -13.50 16 16 C -0.14 -2.57 6.06 -103.36 -0.63 -3.20 16 17 C 0.04 0.66 7.31 -35.06 -0.26 0.40 16 18 C -0.08 -0.88 10.21 36.01 0.37 -0.51 16 19 O -0.15 -2.17 10.51 6.58 0.07 -2.10 16 20 C 0.27 3.84 8.60 -16.04 -0.14 3.70 16 21 N -0.51 -5.50 10.42 -14.00 -0.15 -5.65 16 22 C 0.40 2.51 12.32 -90.00 -1.11 1.40 16 23 N -0.64 -5.53 5.29 -15.88 -0.08 -5.61 16 24 H 0.42 2.13 8.92 -40.82 -0.36 1.76 16 25 C 0.56 8.63 7.79 -14.92 -0.12 8.51 16 26 O -0.49 -9.83 16.99 5.00 0.08 -9.74 16 27 C -0.26 -4.30 6.39 -104.68 -0.67 -4.97 16 28 H 0.04 1.17 7.84 -51.93 -0.41 0.76 16 29 H 0.05 1.41 4.64 -51.93 -0.24 1.17 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 2.75 5.95 -51.93 -0.31 2.44 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.39 7.85 8.52 -40.82 -0.35 7.50 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.10 1.30 7.88 -51.93 -0.41 0.89 16 38 H 0.22 -0.06 8.06 -52.49 -0.42 -0.49 16 LS Contribution 327.33 15.07 4.93 4.93 Total: -1.00 -37.51 327.33 -6.87 -44.38 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.13 Total: 6.39 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -3.00 Total: 5.37 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.11 Total: -51.48 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: 0.23 Total: -25.34 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -37.51 -6.87 -44.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183807667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.107 kcal (2) G-P(sol) polarization free energy of solvation -37.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds