Wall clock time and date at job start Tue Mar 31 2020 08:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21627 * 120.00319 * 0.02562 * 14 13 3 16 16 C 1.47228 * 119.99918 * 180.02562 * 14 13 3 17 17 C 1.36139 * 127.22095 * 89.68320 * 16 14 13 18 18 C 1.50700 * 125.20478 * 0.02562 * 17 16 14 19 19 O 1.33953 * 109.59075 * 179.89012 * 17 16 14 20 20 C 1.34326 * 111.41345 * 0.39803 * 19 17 16 21 21 N 1.34212 * 133.43332 * 179.76996 * 20 19 17 22 22 C 1.30341 * 121.37312 * 179.97438 * 21 20 19 23 23 N 1.35600 * 122.40044 * 0.02562 * 22 21 20 24 24 H 0.96995 * 119.97059 * 179.97438 * 23 22 21 25 25 C 1.35317 * 120.06537 * 359.93772 * 23 22 21 26 26 O 1.21912 * 120.97182 * 180.02562 * 25 23 22 27 27 C 1.39510 * 107.67350 * 359.75868 * 20 19 17 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 35 35 H 1.08999 * 109.46935 * 89.99787 * 18 17 16 36 36 H 1.08996 * 109.47296 * 210.00027 * 18 17 16 37 37 H 1.08999 * 109.46862 * 330.00026 * 18 17 16 38 38 H 1.07995 * 118.79932 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3418 2.6318 0.4318 16 6 0.0459 3.3231 2.6248 17 6 0.2356 4.6278 2.9641 18 6 0.8952 5.6651 2.0924 19 8 -0.2565 4.8491 4.1901 20 6 -0.7774 3.7296 4.7190 21 7 -1.3681 3.4512 5.8916 22 6 -1.7977 2.2519 6.1671 23 7 -1.6766 1.2190 5.2970 24 1 -2.0087 0.3403 5.5387 25 6 -1.0937 1.4130 4.0913 26 8 -0.9767 0.4963 3.2962 27 6 -0.6242 2.7075 3.7820 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8292 -0.0604 -2.9503 34 1 2.2720 2.1231 1.9978 35 1 0.1413 6.1537 1.4752 36 1 1.3876 6.4076 2.7203 37 1 1.6339 5.1843 1.4511 38 1 -2.2664 2.0742 7.1237 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183807667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:26 Heat of formation + Delta-G solvation = -55.755018 kcal Electronic energy + Delta-G solvation = -25453.133048 eV Core-core repulsion = 21682.648311 eV Total energy + Delta-G solvation = -3770.484737 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.16173 -41.82242 -40.61365 -38.74605 -36.99287 -34.97467 -34.68413 -34.14586 -32.66172 -32.43635 -29.26850 -28.39216 -26.06717 -25.29818 -24.62265 -23.91118 -21.74982 -21.16583 -20.36040 -19.93029 -18.88233 -18.32996 -18.18830 -17.29004 -17.15361 -16.66665 -16.45711 -16.22062 -16.03091 -15.66885 -15.23174 -14.93462 -14.63202 -14.41333 -14.33288 -13.76762 -13.72008 -13.49052 -13.20843 -13.11207 -12.93597 -12.67859 -12.20426 -12.11965 -11.72525 -11.69332 -11.57036 -11.38032 -11.14775 -11.08008 -10.86477 -10.55079 -9.73866 -9.22553 -8.16617 -6.34933 -0.52574 0.18080 0.80468 0.94444 1.44723 1.45588 1.51364 1.56532 1.62772 2.29867 2.36711 2.51827 3.10430 3.13081 3.20835 3.29107 3.86387 3.95533 4.15683 4.16941 4.43557 4.49734 4.54360 4.55171 4.65152 4.74250 5.03410 5.04499 5.10478 5.22441 5.39339 5.48064 5.49295 5.57655 5.65124 5.73503 5.84702 6.11084 6.47354 6.67016 6.70577 6.84992 7.28037 7.44371 8.89331 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018907 B = 0.004446 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.568546 B = 6296.186590 C = 6933.562718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.115 4.115 3 C 0.281 3.719 4 H 0.005 0.995 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.974 3.026 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.262 1.262 13 N -0.690 5.690 14 C 0.585 3.415 15 O -0.578 6.578 16 C -0.188 4.188 17 C 0.066 3.934 18 C -0.078 4.078 19 O -0.149 6.149 20 C 0.294 3.706 21 N -0.529 5.529 22 C 0.434 3.566 23 N -0.622 5.622 24 H 0.446 0.554 25 C 0.548 3.452 26 O -0.553 6.553 27 C -0.306 4.306 28 H 0.025 0.975 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.030 0.970 32 H 0.076 0.924 33 H 0.266 0.734 34 H 0.399 0.601 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.344 6.822 21.592 24.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.154 4.154 3 C 0.178 3.822 4 H 0.023 0.977 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.799 3.201 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.186 1.186 13 N -0.337 5.337 14 C 0.371 3.629 15 O -0.459 6.459 16 C -0.193 4.193 17 C 0.015 3.985 18 C -0.134 4.134 19 O -0.042 6.042 20 C 0.130 3.870 21 N -0.259 5.259 22 C 0.151 3.849 23 N -0.267 5.267 24 H 0.289 0.711 25 C 0.344 3.656 26 O -0.431 6.431 27 C -0.314 4.314 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.233 0.767 35 H 0.123 0.877 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.315 0.685 Dipole moment (debyes) X Y Z Total from point charges -8.680 7.285 20.680 23.581 hybrid contribution 0.891 -1.405 -0.923 1.903 sum -7.788 5.880 19.756 22.035 Atomic orbital electron populations 1.21715 0.97420 0.98777 1.00508 1.21747 0.93386 0.99501 1.00804 1.18454 0.94118 0.88855 0.80800 0.97669 1.21513 0.90849 1.39411 1.06863 0.90948 1.25803 1.03590 0.94135 0.94826 1.70062 1.37224 1.38156 1.09867 0.85312 0.78658 0.78887 0.77268 1.19938 1.20985 1.18574 1.46229 1.14792 1.54959 1.17700 1.17366 0.81922 0.77956 0.85670 1.90749 1.52385 1.61367 1.41386 1.20488 1.08234 0.95064 0.95540 1.23029 0.98104 0.94656 0.82694 1.20721 1.00572 0.95462 0.96599 1.83568 1.59971 1.32696 1.28008 1.19768 0.93620 0.82881 0.90771 1.67352 1.21161 1.21253 1.16173 1.26507 0.85307 0.78190 0.94924 1.44715 1.50798 1.16713 1.14460 0.71057 1.16356 0.78987 0.87762 0.82476 1.91040 1.57665 1.45579 1.48858 1.21099 1.15736 0.96315 0.98270 0.95587 0.93174 0.94539 0.95096 0.90587 0.92491 0.76699 0.87689 0.85980 0.89377 0.68478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.76 8.51 71.98 0.61 -6.15 16 2 C -0.12 -6.37 5.45 30.59 0.17 -6.21 16 3 C 0.28 15.48 2.24 44.24 0.10 15.58 16 4 H 0.01 0.35 7.58 -2.39 -0.02 0.33 16 5 C -0.55 -30.10 8.73 25.60 0.22 -29.88 16 6 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 7 C 0.02 0.92 5.29 84.65 0.45 1.36 16 8 N -0.92 -53.72 11.30 21.45 0.24 -53.48 16 9 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 10 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 N -0.69 -32.51 5.02 -449.57 -2.26 -34.76 16 14 C 0.59 27.26 5.80 86.61 0.50 27.76 16 15 O -0.58 -31.51 14.24 -4.12 -0.06 -31.57 16 16 C -0.19 -7.06 6.06 -19.05 -0.12 -7.17 16 17 C 0.07 1.93 7.31 25.20 0.18 2.12 16 18 C -0.08 -1.73 10.21 71.24 0.73 -1.00 16 19 O -0.15 -4.04 10.51 0.62 0.01 -4.03 16 20 C 0.29 7.82 8.60 84.64 0.73 8.55 16 21 N -0.53 -9.35 10.42 -310.79 -3.24 -12.58 16 22 C 0.43 3.21 12.32 180.13 2.22 5.43 16 23 N -0.62 -8.72 5.29 -321.97 -1.70 -10.42 16 24 H 0.45 2.86 8.92 -92.71 -0.83 2.03 16 25 C 0.55 16.88 7.79 84.87 0.66 17.54 16 26 O -0.55 -22.87 16.99 -5.03 -0.09 -22.96 16 27 C -0.31 -10.16 6.39 -19.90 -0.13 -10.29 16 28 H 0.02 1.42 7.84 -2.39 -0.02 1.41 16 29 H 0.05 2.73 4.64 -2.39 -0.01 2.72 16 30 H 0.04 1.75 8.14 -2.38 -0.02 1.74 16 31 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 4.53 5.95 -2.39 -0.01 4.51 16 33 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 34 H 0.40 16.81 8.52 -92.71 -0.79 16.02 16 35 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 2.26 7.88 -2.39 -0.02 2.24 16 38 H 0.30 -2.66 8.06 -2.91 -0.02 -2.69 16 Total: -1.00 -89.51 327.33 0.79 -88.72 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.47 Total: 18.64 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 6.33 Total: 17.65 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -6.96 Total: -111.25 kcal Atomic # 8 Polarization: -58.43 SS G_CDS: -0.14 Total: -58.57 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -89.51 0.79 -88.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183807667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.969 kcal (2) G-P(sol) polarization free energy of solvation -89.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds