Wall clock time and date at job start Tue Mar 31 2020 08:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47564 * 2 1 4 4 H 1.08998 * 109.46824 * 54.99496 * 3 2 1 5 5 C 1.50697 * 109.47358 * 175.00161 * 3 2 1 6 6 H 1.08003 * 120.00022 * 120.00167 * 5 3 2 7 7 C 1.37879 * 119.99825 * 299.99645 * 5 3 2 8 8 N 1.31512 * 120.00103 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99805 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47272 * 90.00287 * 9 7 5 11 11 H 1.48502 * 109.46833 * 209.99744 * 9 7 5 12 12 H 1.48496 * 109.47534 * 329.99947 * 9 7 5 13 13 N 1.46503 * 109.46714 * 294.99984 * 3 2 1 14 14 C 1.34777 * 120.00165 * 84.99892 * 13 3 2 15 15 O 1.21283 * 120.00080 * 359.97438 * 14 13 3 16 16 C 1.50694 * 120.00141 * 179.97438 * 14 13 3 17 17 H 1.08998 * 109.31068 * 334.61499 * 16 14 13 18 18 S 1.81334 * 109.15849 * 94.13313 * 16 14 13 19 19 C 1.82065 * 100.85027 * 166.22241 * 18 16 14 20 20 C 1.52139 * 107.76179 * 296.04275 * 19 18 16 21 21 C 1.50222 * 113.58221 * 52.97774 * 20 19 18 22 22 C 1.39949 * 114.48098 * 159.73911 * 21 20 19 23 23 C 1.37463 * 121.51230 * 178.46049 * 22 21 20 24 24 C 1.38289 * 119.51292 * 359.47305 * 23 22 21 25 25 C 1.37564 * 119.26446 * 0.92561 * 24 23 22 26 26 C 1.36934 * 126.70837 * 338.61717 * 21 20 19 27 27 H 1.09002 * 109.47245 * 300.00222 * 1 2 3 28 28 H 1.08997 * 109.46816 * 60.00190 * 1 2 3 29 29 H 1.08994 * 109.47518 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47245 * 239.99778 * 2 1 3 31 31 H 1.09005 * 109.47115 * 119.99814 * 2 1 3 32 32 H 0.96997 * 120.00272 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00066 * 264.99556 * 13 3 2 34 34 H 1.09000 * 109.80131 * 55.60773 * 19 18 16 35 35 H 1.09003 * 109.80071 * 176.41569 * 19 18 16 36 36 H 1.08998 * 108.66075 * 291.91749 * 20 19 18 37 37 H 1.08999 * 108.66201 * 174.03694 * 20 19 18 38 38 H 1.08002 * 119.23920 * 358.17104 * 22 21 20 39 39 H 1.07995 * 120.23645 * 179.74901 * 23 22 21 40 40 H 1.08003 * 120.36210 * 180.66322 * 24 23 22 41 41 H 1.08007 * 119.33165 * 179.70816 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6524 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3375 2.1734 9 14 6.0049 0.8811 1.3818 10 1 6.4417 2.1140 2.0849 11 1 6.4395 -0.3099 2.1550 12 1 6.6136 0.8414 0.0279 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6644 -1.3671 15 8 -0.3396 2.6320 -0.4345 16 6 0.0368 3.3385 -2.6546 17 1 0.9324 3.6698 -3.1801 18 16 -0.8640 2.1551 -3.6920 19 6 -1.5874 3.2709 -4.9356 20 6 -2.5540 4.2012 -4.2182 21 6 -1.9431 4.9148 -3.0460 22 6 -2.6259 6.0707 -2.6506 23 6 -2.2104 6.8179 -1.5742 24 6 -1.0991 6.4173 -0.8552 25 6 -0.4183 5.2868 -1.2437 26 6 -0.8306 4.5333 -2.3446 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0603 2.9503 33 1 2.2720 2.1231 -1.9978 34 1 -0.7990 3.8536 -5.4120 35 1 -2.1219 2.6895 -5.6869 36 1 -3.4042 3.6168 -3.8663 37 1 -2.9155 4.9442 -4.9291 38 1 -3.4966 6.3853 -3.2068 39 1 -2.7505 7.7087 -1.2896 40 1 -0.7669 6.9882 -0.0006 41 1 0.4525 4.9757 -0.6857 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183906669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:32 Heat of formation + Delta-G solvation = -17.763157 kcal Electronic energy + Delta-G solvation = -23057.389943 eV Core-core repulsion = 19834.845872 eV Total energy + Delta-G solvation = -3222.544071 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.05425 -38.65559 -35.13710 -34.53273 -32.75189 -32.28082 -30.82053 -29.75575 -27.93910 -26.61665 -24.09289 -23.03761 -22.45187 -20.72457 -20.23571 -19.36592 -17.40487 -16.59062 -16.47471 -15.97289 -15.40392 -15.35489 -15.07523 -14.62798 -14.40134 -13.93900 -13.51320 -13.32855 -13.06144 -12.92364 -12.64601 -12.59207 -12.32244 -11.87543 -11.60288 -11.39795 -11.26036 -11.19086 -10.97526 -10.90418 -10.80439 -10.31785 -10.17341 -9.94831 -9.59247 -9.14551 -9.04633 -8.67693 -8.59480 -8.49620 -7.86218 -7.67349 -6.13037 -4.22764 1.25082 1.41647 1.53518 2.33642 3.23988 3.30927 3.32600 3.53218 3.69873 4.01385 4.35413 4.42619 4.54721 4.69772 4.94194 5.00912 5.09659 5.17785 5.20640 5.26599 5.41564 5.45002 5.54337 5.68513 5.70735 5.97987 6.08500 6.43886 6.45985 6.51908 6.52015 6.60455 6.70459 7.00797 7.09098 7.21672 7.36328 7.42573 7.61837 7.71813 7.88643 8.17523 8.60330 8.74918 9.05282 9.44331 10.92198 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019476 B = 0.004251 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.343243 B = 6584.504905 C = 7190.734700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.699 5.699 14 C 0.523 3.477 15 O -0.523 6.523 16 C -0.045 4.045 17 H 0.111 0.889 18 S -0.203 6.203 19 C -0.091 4.091 20 C -0.078 4.078 21 C -0.072 4.072 22 C -0.129 4.129 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.084 4.084 26 C -0.058 4.058 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.022 0.978 30 H 0.032 0.968 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.390 0.610 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 9.787 -13.130 18.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.347 5.347 14 C 0.304 3.696 15 O -0.400 6.400 16 C -0.177 4.177 17 H 0.129 0.871 18 S 0.025 5.975 19 C -0.239 4.239 20 C -0.116 4.116 21 C -0.072 4.072 22 C -0.147 4.147 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.104 4.104 26 C -0.059 4.059 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.222 0.778 34 H 0.106 0.894 35 H 0.130 0.870 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.147 8.474 -12.167 17.967 hybrid contribution 1.441 1.238 -0.305 1.924 sum -8.706 9.712 -12.473 18.047 Atomic orbital electron populations 1.21849 0.98214 0.98186 1.01353 1.21931 0.92716 0.99635 1.02307 1.18830 0.94257 0.89277 0.80565 0.93247 1.21216 0.90607 1.39185 1.06335 0.92061 1.24874 0.98583 0.94740 0.95379 1.69895 1.35142 1.37519 1.09287 0.86460 0.84865 0.77646 0.78210 1.20588 1.21056 1.19831 1.46516 1.14107 1.55345 1.18758 1.19205 0.83316 0.79915 0.87117 1.90720 1.51119 1.58777 1.39344 1.22331 1.00221 0.95754 0.99409 0.87077 1.87352 1.65705 1.13525 1.30934 1.23349 1.01708 0.99960 0.98917 1.20392 0.98382 0.98134 0.94731 1.19302 0.94580 0.96069 0.97296 1.21213 0.99967 0.95240 0.98253 1.20977 0.96993 0.99672 0.95726 1.21020 0.96114 0.96986 0.99864 1.21361 1.00035 0.93963 0.95021 1.18873 0.95525 0.94806 0.96732 0.93286 0.93912 0.95841 0.94953 0.88288 0.92540 0.77802 0.89443 0.86961 0.89406 0.89987 0.86329 0.86078 0.85789 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.51 37.16 0.32 -2.89 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.78 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.94 8.73 -34.44 -0.30 -14.25 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.53 11.29 55.43 0.63 -23.91 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.70 -14.44 5.02 -54.93 -0.28 -14.71 16 14 C 0.52 10.36 4.07 -10.99 -0.04 10.32 16 15 O -0.52 -12.15 12.69 5.55 0.07 -12.08 16 16 C -0.05 -0.72 3.01 -28.96 -0.09 -0.80 16 17 H 0.11 1.52 8.11 -51.92 -0.42 1.10 16 18 S -0.20 -2.98 21.66 -107.50 -2.33 -5.31 16 19 C -0.09 -0.91 6.57 36.72 0.24 -0.66 16 20 C -0.08 -0.78 5.29 -28.55 -0.15 -0.93 16 21 C -0.07 -0.93 5.74 -104.69 -0.60 -1.53 16 22 C -0.13 -1.48 9.39 -39.22 -0.37 -1.85 16 23 C -0.12 -1.35 10.05 -39.85 -0.40 -1.75 16 24 C -0.12 -1.64 10.06 -39.81 -0.40 -2.04 16 25 C -0.08 -1.34 8.27 -39.31 -0.33 -1.66 16 26 C -0.06 -0.88 5.21 -104.49 -0.54 -1.43 16 27 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 28 H 0.04 0.98 5.64 -51.93 -0.29 0.68 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.39 7.10 8.51 -40.82 -0.35 6.75 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.61 7.96 -51.93 -0.41 0.19 16 38 H 0.12 1.03 7.94 -52.49 -0.42 0.62 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 41 H 0.12 2.15 6.83 -52.48 -0.36 1.79 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -30.35 338.68 -10.75 -41.09 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.86 Total: 8.80 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -3.06 Total: -14.42 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.35 Total: -38.62 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.08 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -2.33 Total: -5.31 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.35 -10.75 -41.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183906669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.330 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds