Wall clock time and date at job start Tue Mar 31 2020 08:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47564 * 2 1 4 4 H 1.08998 * 109.46824 * 54.99496 * 3 2 1 5 5 C 1.50697 * 109.47358 * 175.00161 * 3 2 1 6 6 H 1.08003 * 120.00022 * 120.00167 * 5 3 2 7 7 C 1.37879 * 119.99825 * 299.99645 * 5 3 2 8 8 N 1.31512 * 120.00103 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99805 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47272 * 90.00287 * 9 7 5 11 11 H 1.48502 * 109.46833 * 209.99744 * 9 7 5 12 12 H 1.48496 * 109.47534 * 329.99947 * 9 7 5 13 13 N 1.46503 * 109.46714 * 294.99984 * 3 2 1 14 14 C 1.34777 * 120.00165 * 84.99892 * 13 3 2 15 15 O 1.21283 * 120.00080 * 359.97438 * 14 13 3 16 16 C 1.50694 * 120.00141 * 179.97438 * 14 13 3 17 17 H 1.08998 * 109.31068 * 334.61499 * 16 14 13 18 18 S 1.81334 * 109.15849 * 94.13313 * 16 14 13 19 19 C 1.82065 * 100.85027 * 166.22241 * 18 16 14 20 20 C 1.52139 * 107.76179 * 296.04275 * 19 18 16 21 21 C 1.50222 * 113.58221 * 52.97774 * 20 19 18 22 22 C 1.39949 * 114.48098 * 159.73911 * 21 20 19 23 23 C 1.37463 * 121.51230 * 178.46049 * 22 21 20 24 24 C 1.38289 * 119.51292 * 359.47305 * 23 22 21 25 25 C 1.37564 * 119.26446 * 0.92561 * 24 23 22 26 26 C 1.36934 * 126.70837 * 338.61717 * 21 20 19 27 27 H 1.09002 * 109.47245 * 300.00222 * 1 2 3 28 28 H 1.08997 * 109.46816 * 60.00190 * 1 2 3 29 29 H 1.08994 * 109.47518 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47245 * 239.99778 * 2 1 3 31 31 H 1.09005 * 109.47115 * 119.99814 * 2 1 3 32 32 H 0.96997 * 120.00272 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00066 * 264.99556 * 13 3 2 34 34 H 1.09000 * 109.80131 * 55.60773 * 19 18 16 35 35 H 1.09003 * 109.80071 * 176.41569 * 19 18 16 36 36 H 1.08998 * 108.66075 * 291.91749 * 20 19 18 37 37 H 1.08999 * 108.66201 * 174.03694 * 20 19 18 38 38 H 1.08002 * 119.23920 * 358.17104 * 22 21 20 39 39 H 1.07995 * 120.23645 * 179.74901 * 23 22 21 40 40 H 1.08003 * 120.36210 * 180.66322 * 24 23 22 41 41 H 1.08007 * 119.33165 * 179.70816 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6524 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3375 2.1734 9 14 6.0049 0.8811 1.3818 10 1 6.4417 2.1140 2.0849 11 1 6.4395 -0.3099 2.1550 12 1 6.6136 0.8414 0.0279 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6644 -1.3671 15 8 -0.3396 2.6320 -0.4345 16 6 0.0368 3.3385 -2.6546 17 1 0.9324 3.6698 -3.1801 18 16 -0.8640 2.1551 -3.6920 19 6 -1.5874 3.2709 -4.9356 20 6 -2.5540 4.2012 -4.2182 21 6 -1.9431 4.9148 -3.0460 22 6 -2.6259 6.0707 -2.6506 23 6 -2.2104 6.8179 -1.5742 24 6 -1.0991 6.4173 -0.8552 25 6 -0.4183 5.2868 -1.2437 26 6 -0.8306 4.5333 -2.3446 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0603 2.9503 33 1 2.2720 2.1231 -1.9978 34 1 -0.7990 3.8536 -5.4120 35 1 -2.1219 2.6895 -5.6869 36 1 -3.4042 3.6168 -3.8663 37 1 -2.9155 4.9442 -4.9291 38 1 -3.4966 6.3853 -3.2068 39 1 -2.7505 7.7087 -1.2896 40 1 -0.7669 6.9882 -0.0006 41 1 0.4525 4.9757 -0.6857 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183906669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:32 Heat of formation + Delta-G solvation = -35.100183 kcal Electronic energy + Delta-G solvation = -23058.141733 eV Core-core repulsion = 19834.845872 eV Total energy + Delta-G solvation = -3223.295861 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34778 -40.02656 -37.01288 -35.40450 -34.39114 -33.84472 -32.61630 -30.69646 -29.44255 -28.25466 -25.30534 -24.67634 -23.62430 -22.13200 -21.50407 -21.18504 -19.09206 -17.74677 -17.70274 -17.63824 -17.05150 -16.41736 -16.29924 -15.99003 -15.86665 -15.28694 -14.81189 -14.68199 -14.50732 -14.14588 -14.05300 -13.73965 -13.53657 -13.47915 -13.20148 -13.00384 -12.89419 -12.70682 -12.46600 -12.21592 -12.17797 -12.06516 -11.85061 -11.60988 -11.09151 -10.98621 -10.73984 -10.53917 -9.73428 -9.68158 -9.57545 -8.80327 -8.17629 -6.35367 0.17156 0.40733 0.45752 1.37049 1.43896 1.44197 1.55048 2.00548 2.29176 2.48651 2.81809 3.11835 3.33330 3.72948 3.81401 3.87785 3.96286 4.11628 4.21184 4.26610 4.46059 4.52401 4.54803 4.55215 4.72208 4.74784 4.81248 4.92865 5.00403 5.04308 5.15127 5.22754 5.40465 5.49895 5.51021 5.53498 5.57557 5.58949 5.75520 5.87305 6.04560 6.13345 6.71264 6.88038 7.29765 7.47425 8.87855 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019476 B = 0.004251 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.343243 B = 6584.504905 C = 7190.734700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 C 0.283 3.717 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.261 1.261 13 N -0.699 5.699 14 C 0.525 3.475 15 O -0.562 6.562 16 C -0.033 4.033 17 H 0.126 0.874 18 S -0.254 6.254 19 C -0.072 4.072 20 C -0.078 4.078 21 C -0.078 4.078 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.134 4.134 25 C -0.116 4.116 26 C -0.082 4.082 27 H 0.024 0.976 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.265 0.735 33 H 0.402 0.598 34 H 0.103 0.897 35 H 0.141 0.859 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.132 0.868 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.603 11.171 -16.119 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C 0.179 3.821 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.185 1.185 13 N -0.348 5.348 14 C 0.309 3.691 15 O -0.442 6.442 16 C -0.164 4.164 17 H 0.144 0.856 18 S -0.026 6.026 19 C -0.220 4.220 20 C -0.116 4.116 21 C -0.078 4.078 22 C -0.142 4.142 23 C -0.131 4.131 24 C -0.152 4.152 25 C -0.135 4.135 26 C -0.083 4.083 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.121 0.879 35 H 0.159 0.841 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.175 0.825 39 H 0.172 0.828 40 H 0.150 0.850 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.201 9.872 -15.198 21.305 hybrid contribution 1.656 0.885 0.605 1.972 sum -9.546 10.756 -14.594 20.489 Atomic orbital electron populations 1.21673 0.97108 0.99078 1.00193 1.21777 0.93586 0.99214 1.01243 1.18377 0.93768 0.89044 0.80867 0.98289 1.21551 0.91230 1.39158 1.06800 0.91080 1.25757 1.03339 0.94241 0.94945 1.70046 1.37116 1.38258 1.09815 0.85372 0.79048 0.77478 0.78613 1.20361 1.20884 1.18479 1.46279 1.15084 1.55639 1.17804 1.19843 0.82187 0.78789 0.88275 1.90686 1.52107 1.60130 1.41275 1.22088 1.01375 0.95826 0.97098 0.85632 1.87460 1.66552 1.15818 1.32749 1.23547 1.01990 0.99092 0.97343 1.20493 0.97886 0.98878 0.94365 1.19726 0.93437 0.96731 0.97929 1.21687 1.00425 0.94112 0.97928 1.21380 0.95956 1.00560 0.95167 1.21239 0.96907 0.96457 1.00602 1.21270 1.00205 0.95881 0.96163 1.18964 0.97063 0.94707 0.97598 0.95639 0.93807 0.93741 0.94241 0.90825 0.92549 0.76343 0.87859 0.84070 0.89320 0.85933 0.82471 0.82812 0.84969 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.51 71.98 0.61 -5.30 16 2 C -0.12 -6.11 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.85 2.24 44.24 0.10 14.94 16 4 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 5 C -0.55 -29.45 8.73 25.60 0.22 -29.23 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.91 -52.82 11.29 21.45 0.24 -52.58 16 9 Si 0.97 42.40 29.54 68.60 2.03 44.43 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 13 N -0.70 -30.24 5.02 -446.10 -2.24 -32.48 16 14 C 0.53 21.86 4.07 87.66 0.36 22.22 16 15 O -0.56 -27.88 12.69 -3.04 -0.04 -27.92 16 16 C -0.03 -1.04 3.01 29.15 0.09 -0.95 16 17 H 0.13 3.47 8.11 -2.39 -0.02 3.45 16 18 S -0.25 -7.16 21.66 -56.49 -1.22 -8.39 16 19 C -0.07 -1.16 6.57 71.70 0.47 -0.69 16 20 C -0.08 -1.23 5.29 29.41 0.16 -1.07 16 21 C -0.08 -1.81 5.74 -19.91 -0.11 -1.93 16 22 C -0.12 -2.39 9.39 22.50 0.21 -2.18 16 23 C -0.11 -2.34 10.05 22.10 0.22 -2.12 16 24 C -0.13 -3.61 10.06 22.12 0.22 -3.39 16 25 C -0.12 -3.84 8.27 22.45 0.19 -3.65 16 26 C -0.08 -2.49 5.21 -19.78 -0.10 -2.59 16 27 H 0.02 1.30 7.85 -2.39 -0.02 1.28 16 28 H 0.04 2.07 5.64 -2.39 -0.01 2.06 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 4.18 5.95 -2.38 -0.01 4.16 16 32 H 0.27 14.52 8.31 -92.71 -0.77 13.74 16 33 H 0.40 15.11 8.51 -92.71 -0.79 14.32 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.12 1.03 7.96 -2.39 -0.02 1.01 16 38 H 0.16 1.81 7.94 -2.91 -0.02 1.79 16 39 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 41 H 0.09 3.46 6.83 -2.91 -0.02 3.44 16 Total: -1.00 -70.48 338.68 2.26 -68.22 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.25 Total: 29.20 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 3.25 Total: -20.49 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -2.00 Total: -85.06 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.04 Total: -27.92 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -1.22 Total: -8.39 kcal Total: -70.48 2.26 -68.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183906669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.120 kcal (2) G-P(sol) polarization free energy of solvation -70.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds