Wall clock time and date at job start Tue Mar 31 2020 08:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47278 * 2 1 4 4 H 1.09004 * 109.47068 * 54.99639 * 3 2 1 5 5 C 1.50700 * 109.47481 * 174.99607 * 3 2 1 6 6 H 1.07995 * 119.99694 * 119.99585 * 5 3 2 7 7 C 1.37875 * 119.99832 * 300.00338 * 5 3 2 8 8 N 1.31508 * 120.00340 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99709 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47005 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46904 * 119.99976 * 9 7 5 12 12 H 1.48497 * 109.47022 * 239.99914 * 9 7 5 13 13 N 1.46504 * 109.46880 * 295.00051 * 3 2 1 14 14 C 1.34773 * 120.00028 * 85.00397 * 13 3 2 15 15 O 1.21284 * 120.00265 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99723 * 180.02562 * 14 13 3 17 17 H 1.08992 * 109.15500 * 30.47735 * 16 14 13 18 18 S 1.81330 * 109.30857 * 270.96175 * 16 14 13 19 19 C 1.82061 * 100.85543 * 193.70050 * 18 16 14 20 20 C 1.52137 * 107.75106 * 63.96579 * 19 18 16 21 21 C 1.50226 * 113.57805 * 307.00097 * 20 19 18 22 22 C 1.39948 * 114.48832 * 200.96638 * 21 20 19 23 23 C 1.37455 * 121.51711 * 180.88282 * 22 21 20 24 24 C 1.38291 * 119.51532 * 0.51165 * 23 22 21 25 25 C 1.37576 * 119.26092 * 359.11795 * 24 23 22 26 26 C 1.36945 * 126.71564 * 21.39304 * 21 20 19 27 27 H 1.09005 * 109.46744 * 59.99934 * 1 2 3 28 28 H 1.08999 * 109.47339 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47262 * 300.00625 * 1 2 3 30 30 H 1.08998 * 109.47493 * 239.99874 * 2 1 3 31 31 H 1.09000 * 109.47051 * 119.99708 * 2 1 3 32 32 H 0.97002 * 120.00215 * 180.02562 * 8 7 5 33 33 H 0.97004 * 119.99437 * 264.99559 * 13 3 2 34 34 H 1.08994 * 109.80354 * 304.39860 * 19 18 16 35 35 H 1.09005 * 109.80514 * 183.52695 * 19 18 16 36 36 H 1.08997 * 108.66824 * 185.94314 * 20 19 18 37 37 H 1.08999 * 108.55968 * 67.98357 * 20 19 18 38 38 H 1.07999 * 119.23825 * 1.13886 * 22 21 20 39 39 H 1.07997 * 120.24594 * 180.26041 * 23 22 21 40 40 H 1.08002 * 120.37334 * 179.40323 * 24 23 22 41 41 H 1.08004 * 119.33562 * 180.28196 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8801 1.3813 10 1 6.5988 1.5443 0.1933 11 1 6.3998 1.6158 2.6093 12 1 6.4961 -0.5189 1.4629 13 7 1.6524 2.0975 -1.2519 14 6 0.4352 2.6644 -1.3670 15 8 -0.3396 2.6321 -0.4344 16 6 0.0363 3.3377 -2.6549 17 1 0.5377 2.8434 -3.4870 18 16 0.5382 5.0793 -2.6015 19 6 -0.3968 5.7490 -4.0129 20 6 -1.8783 5.6068 -3.6973 21 6 -2.2794 4.2113 -3.3120 22 6 -3.6432 3.9367 -3.4646 23 6 -4.1701 2.7100 -3.1376 24 6 -3.3404 1.7239 -2.6362 25 6 -1.9974 1.9846 -2.4912 26 6 -1.4574 3.2255 -2.8347 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8291 -0.0603 2.9503 33 1 2.2720 2.1231 -1.9978 34 1 -0.1559 5.1872 -4.9154 35 1 -0.1487 6.8009 -4.1546 36 1 -2.4521 5.9049 -4.5748 37 1 -2.1241 6.2797 -2.8758 38 1 -4.2958 4.7051 -3.8519 39 1 -5.2251 2.5190 -3.2675 40 1 -3.7414 0.7582 -2.3657 41 1 -1.3475 1.2137 -2.1040 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183906708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:35 Heat of formation + Delta-G solvation = -33.706106 kcal Electronic energy + Delta-G solvation = -23128.368286 eV Core-core repulsion = 19905.132876 eV Total energy + Delta-G solvation = -3223.235410 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38761 -39.98919 -37.01245 -35.40166 -34.38613 -33.77714 -32.75076 -30.65280 -29.38283 -28.29174 -25.33694 -24.71689 -23.49448 -22.23043 -21.48955 -21.17392 -19.09634 -17.79133 -17.72492 -17.54459 -17.01818 -16.51893 -16.28738 -16.06690 -15.85854 -15.13522 -14.94805 -14.65087 -14.50485 -14.16578 -13.94939 -13.77974 -13.52678 -13.50804 -13.21181 -13.00056 -12.88765 -12.72495 -12.45561 -12.24451 -12.11130 -12.01233 -11.86560 -11.53647 -11.08052 -11.00163 -10.72265 -10.54885 -9.72111 -9.66797 -9.56434 -8.82448 -8.17974 -6.35277 0.17503 0.43414 0.46465 1.36856 1.42719 1.44074 1.56002 2.01368 2.28234 2.48671 2.83679 3.11657 3.33011 3.73537 3.81672 3.87806 3.96527 4.08980 4.22367 4.25474 4.46014 4.50876 4.55852 4.57993 4.69277 4.77152 4.81229 4.92762 4.98541 5.08259 5.15053 5.25273 5.40944 5.51393 5.52502 5.55531 5.58326 5.61475 5.76066 5.88365 6.06705 6.14148 6.71651 6.87676 7.29697 7.46945 8.87653 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020892 B = 0.004367 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.900492 B = 6409.587456 C = 7515.851126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.120 4.120 3 C 0.282 3.718 4 H -0.004 1.004 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.277 1.277 13 N -0.698 5.698 14 C 0.524 3.476 15 O -0.562 6.562 16 C -0.031 4.031 17 H 0.128 0.872 18 S -0.262 6.262 19 C -0.071 4.071 20 C -0.079 4.079 21 C -0.079 4.079 22 C -0.126 4.126 23 C -0.113 4.113 24 C -0.135 4.135 25 C -0.115 4.115 26 C -0.083 4.083 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.024 0.976 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.265 0.735 33 H 0.402 0.598 34 H 0.104 0.896 35 H 0.140 0.860 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.134 0.866 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.998 7.987 -17.245 22.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.014 0.986 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.185 1.185 11 H -0.210 1.210 12 H -0.202 1.202 13 N -0.347 5.347 14 C 0.307 3.693 15 O -0.442 6.442 16 C -0.162 4.162 17 H 0.146 0.854 18 S -0.034 6.034 19 C -0.218 4.218 20 C -0.117 4.117 21 C -0.080 4.080 22 C -0.143 4.143 23 C -0.131 4.131 24 C -0.153 4.153 25 C -0.134 4.134 26 C -0.085 4.085 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.237 0.763 34 H 0.122 0.878 35 H 0.158 0.842 36 H 0.141 0.859 37 H 0.105 0.895 38 H 0.173 0.827 39 H 0.171 0.829 40 H 0.152 0.848 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.770 8.415 -15.684 21.338 hybrid contribution 0.681 -1.093 -0.141 1.295 sum -11.089 7.323 -15.825 20.664 Atomic orbital electron populations 1.21797 0.96973 0.99289 1.00494 1.21778 0.93790 0.98905 1.01429 1.18391 0.93753 0.89171 0.80842 0.98580 1.21586 0.91332 1.38946 1.06800 0.91223 1.25744 1.03317 0.94287 0.94921 1.70048 1.37003 1.38366 1.09837 0.85331 0.79126 0.77905 0.78200 1.18547 1.20996 1.20231 1.46270 1.14907 1.55640 1.17883 1.19866 0.82265 0.78594 0.88538 1.90689 1.52126 1.60349 1.40990 1.22093 0.97256 0.97333 0.99566 0.85413 1.87575 1.63499 1.06045 1.46266 1.23540 0.95959 1.05988 0.96327 1.20497 0.95149 0.92009 1.04006 1.19723 0.94177 0.95237 0.98818 1.21660 0.93863 0.98093 1.00721 1.21378 1.00877 0.93156 0.97675 1.21254 0.92978 1.00890 1.00143 1.21439 0.96951 0.96470 0.98571 1.18967 0.92011 0.95184 1.02343 0.93077 0.93441 0.95705 0.93915 0.90881 0.92562 0.76332 0.87778 0.84182 0.85939 0.89485 0.82669 0.82910 0.84825 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.51 71.98 0.61 -5.23 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.78 2.24 44.25 0.10 14.88 16 4 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 5 C -0.55 -29.67 8.73 25.60 0.22 -29.45 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.91 -52.92 11.29 21.45 0.24 -52.67 16 9 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 10 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.70 -30.16 5.02 -446.08 -2.24 -32.40 16 14 C 0.52 21.74 4.57 87.66 0.40 22.14 16 15 O -0.56 -27.70 12.48 -3.04 -0.04 -27.74 16 16 C -0.03 -1.00 2.99 29.16 0.09 -0.91 16 17 H 0.13 3.48 8.14 -2.40 -0.02 3.46 16 18 S -0.26 -7.64 21.67 -56.49 -1.22 -8.86 16 19 C -0.07 -1.17 6.57 71.70 0.47 -0.70 16 20 C -0.08 -1.26 5.30 29.41 0.16 -1.11 16 21 C -0.08 -1.84 5.74 -19.90 -0.11 -1.96 16 22 C -0.13 -2.41 9.39 22.50 0.21 -2.20 16 23 C -0.11 -2.29 10.05 22.10 0.22 -2.07 16 24 C -0.13 -3.49 10.07 22.13 0.22 -3.27 16 25 C -0.11 -3.67 8.18 22.45 0.18 -3.48 16 26 C -0.08 -2.51 5.20 -19.78 -0.10 -2.61 16 27 H 0.05 2.21 3.40 -2.38 -0.01 2.20 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.02 1.22 7.85 -2.39 -0.02 1.20 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.07 4.07 5.95 -2.39 -0.01 4.06 16 32 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.40 15.14 8.54 -92.71 -0.79 14.35 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.14 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.12 1.07 7.95 -2.39 -0.02 1.05 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.16 1.82 7.93 -2.91 -0.02 1.79 16 39 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 41 H 0.10 3.63 4.56 -2.91 -0.01 3.62 16 Total: -1.00 -70.71 334.39 2.31 -68.40 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.26 Total: 28.86 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 3.29 Total: -20.38 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -2.00 Total: -85.07 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.04 Total: -27.74 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: -7.64 SS G_CDS: -1.22 Total: -8.86 kcal Total: -70.71 2.31 -68.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183906708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.689 kcal (2) G-P(sol) polarization free energy of solvation -70.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds