Wall clock time and date at job start Tue Mar 31 2020 08:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53007 * 109.46824 * 2 1 4 4 H 1.08995 * 109.47227 * 54.37654 * 3 2 1 5 5 C 1.50698 * 109.46490 * 174.37414 * 3 2 1 6 6 H 1.07999 * 120.00215 * 114.48885 * 5 3 2 7 7 C 1.37887 * 120.00201 * 294.48198 * 5 3 2 8 8 N 1.31511 * 120.00238 * 163.25891 * 7 5 3 9 9 Si 1.86799 * 119.99724 * 343.25805 * 7 5 3 10 10 H 1.48502 * 109.47125 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47482 * 299.99875 * 9 7 5 12 12 H 1.48502 * 109.47201 * 60.00138 * 9 7 5 13 13 O 1.45192 * 109.47187 * 294.37032 * 3 2 1 14 14 C 1.34232 * 117.00028 * 90.00443 * 13 3 2 15 15 O 1.20826 * 119.99657 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00150 * 179.97438 * 14 13 3 17 17 C 1.50702 * 109.47230 * 179.97438 * 16 14 13 18 18 C 1.34238 * 126.49890 * 265.02204 * 17 16 14 19 19 N 1.36811 * 109.93523 * 179.97438 * 18 17 16 20 20 H 0.96995 * 125.07007 * 180.02562 * 19 18 17 21 21 C 1.37818 * 109.86101 * 0.02562 * 19 18 17 22 22 C 1.39091 * 133.39096 * 180.02562 * 21 19 18 23 23 C 1.37725 * 119.94922 * 179.30827 * 22 21 19 24 24 C 1.39032 * 120.64331 * 0.55977 * 23 22 21 25 25 F 1.35109 * 119.83231 * 179.61747 * 24 23 22 26 26 C 1.37789 * 120.33899 * 359.64570 * 24 23 22 27 27 C 1.39674 * 119.62685 * 359.97438 * 26 24 23 28 28 H 1.08989 * 109.47102 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46951 * 300.00087 * 1 2 3 30 30 H 1.09002 * 109.46869 * 59.99626 * 1 2 3 31 31 H 1.08997 * 109.47010 * 240.00188 * 2 1 3 32 32 H 1.08993 * 109.47064 * 119.99803 * 2 1 3 33 33 H 0.96999 * 119.99731 * 354.55933 * 8 7 5 34 34 H 1.09003 * 109.47335 * 299.99672 * 16 14 13 35 35 H 1.08999 * 109.47218 * 59.99801 * 16 14 13 36 36 H 1.08006 * 125.03409 * 359.93428 * 18 17 16 37 37 H 1.08001 * 120.03108 * 359.94486 * 22 21 19 38 38 H 1.07993 * 119.67736 * 180.20454 * 23 22 21 39 39 H 1.08003 * 120.19055 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5968 1.9846 0.8353 5 6 3.5406 1.4448 0.1393 6 1 4.1576 1.8052 -0.6705 7 6 4.1259 0.9867 1.3007 8 7 5.4038 0.6764 1.3150 9 14 3.1036 0.8069 2.8537 10 1 3.9611 0.2994 3.9548 11 1 2.5416 2.1283 3.2323 12 1 1.9952 -0.1506 2.6087 13 8 1.6688 2.0872 -1.2469 14 6 0.4859 2.7209 -1.2767 15 8 -0.2163 2.7360 -0.2935 16 6 0.0336 3.4134 -2.5364 17 6 -1.3171 4.0413 -2.3072 18 6 -2.5097 3.4995 -2.6009 19 7 -3.5126 4.3617 -2.2509 20 1 -4.4603 4.1905 -2.3664 21 6 -2.9755 5.5097 -1.7097 22 6 -3.5333 6.6786 -1.2026 23 6 -2.7173 7.6704 -0.7052 24 6 -1.3350 7.5217 -0.7145 25 9 -0.5496 8.5084 -0.2295 26 6 -0.7618 6.3736 -1.2162 27 6 -1.5777 5.3563 -1.7165 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.9164 0.6941 0.4917 34 1 0.7534 4.1869 -2.8043 35 1 -0.0367 2.6864 -3.3455 36 1 -2.6558 2.5272 -3.0479 37 1 -4.6059 6.8042 -1.1892 38 1 -3.1552 8.5748 -0.3095 39 1 0.3123 6.2604 -1.2218 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187924247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:52 Heat of formation + Delta-G solvation = -104.440566 kcal Electronic energy + Delta-G solvation = -24627.097497 eV Core-core repulsion = 20834.581635 eV Total energy + Delta-G solvation = -3792.515862 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.82064 -42.32530 -41.23424 -37.81715 -37.49693 -35.50897 -34.24632 -33.76250 -31.45092 -29.93043 -29.57038 -28.26596 -24.54698 -24.10606 -23.16669 -22.93860 -21.49190 -20.42389 -19.85430 -18.96031 -18.56193 -18.29160 -17.36108 -17.23101 -16.94179 -16.55651 -16.19304 -15.78599 -15.21839 -15.13492 -14.99040 -14.74960 -14.54840 -14.40658 -14.05450 -13.93559 -13.74083 -13.48938 -13.35614 -12.98746 -12.74310 -12.66329 -12.43030 -12.28559 -11.90037 -11.82090 -11.54180 -11.50309 -11.19341 -10.81101 -10.69831 -10.63439 -9.15836 -8.93669 -8.68313 -6.55237 -0.02421 0.38323 1.37029 1.43258 1.43515 1.47909 1.64074 2.16585 2.32218 2.35401 2.72778 2.87937 3.30047 3.63345 3.77799 3.90966 4.06731 4.11457 4.20251 4.25431 4.27952 4.38207 4.46055 4.61226 4.63309 4.64381 4.74357 4.82114 5.01798 5.05014 5.10608 5.14229 5.20821 5.27208 5.42625 5.52513 5.60832 5.66308 5.88113 6.02838 6.06373 6.41065 6.69215 7.03848 7.23003 8.47637 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016922 B = 0.004056 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.259200 B = 6901.983389 C = 7721.894569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.203 3.797 4 H 0.023 0.977 5 C -0.618 4.618 6 H 0.031 0.969 7 C 0.001 3.999 8 N -0.920 5.920 9 Si 1.065 2.935 10 H -0.273 1.273 11 H -0.276 1.276 12 H -0.235 1.235 13 O -0.364 6.364 14 C 0.443 3.557 15 O -0.532 6.532 16 C -0.031 4.031 17 C -0.197 4.197 18 C 0.103 3.897 19 N -0.574 5.574 20 H 0.438 0.562 21 C 0.076 3.924 22 C -0.085 4.085 23 C -0.138 4.138 24 C 0.052 3.948 25 F -0.155 7.155 26 C -0.135 4.135 27 C -0.091 4.091 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.260 0.740 34 H 0.110 0.890 35 H 0.144 0.856 36 H 0.212 0.788 37 H 0.170 0.830 38 H 0.163 0.837 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.119 7.728 -9.842 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.182 4.182 3 C 0.148 3.852 4 H 0.041 0.959 5 C -0.656 4.656 6 H 0.049 0.951 7 C -0.199 4.199 8 N -0.554 5.554 9 Si 0.885 3.115 10 H -0.198 1.198 11 H -0.202 1.202 12 H -0.159 1.159 13 O -0.281 6.281 14 C 0.287 3.713 15 O -0.422 6.422 16 C -0.068 4.068 17 C -0.204 4.204 18 C -0.026 4.026 19 N -0.178 5.178 20 H 0.279 0.721 21 C -0.031 4.031 22 C -0.105 4.105 23 C -0.158 4.158 24 C 0.032 3.968 25 F -0.134 7.134 26 C -0.155 4.155 27 C -0.096 4.096 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.128 0.872 35 H 0.161 0.839 36 H 0.229 0.771 37 H 0.188 0.812 38 H 0.181 0.819 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -24.303 7.307 -7.953 26.594 hybrid contribution 0.927 0.696 -1.410 1.825 sum -23.376 8.003 -9.363 26.422 Atomic orbital electron populations 1.21781 0.94558 1.01679 1.01352 1.22296 0.96306 0.97110 1.02476 1.20579 0.93868 0.89916 0.80792 0.95937 1.22127 0.91118 1.48130 1.04210 0.95087 1.26915 0.97298 0.91654 1.04066 1.70940 1.09070 1.44391 1.30974 0.83855 0.75563 0.78875 0.73160 1.19766 1.20191 1.15934 1.86514 1.36942 1.63503 1.41110 1.24559 0.79023 0.76044 0.91631 1.90578 1.55191 1.58645 1.37790 1.19633 0.94197 1.00370 0.92631 1.19642 0.94188 0.94869 1.11692 1.22161 0.85525 0.96053 0.98831 1.41666 1.09720 1.13043 1.53360 0.72093 1.18422 0.91874 0.90730 1.02084 1.20218 1.01361 0.89835 0.99087 1.21033 0.90103 1.01785 1.02870 1.17621 0.89712 0.86654 1.02804 1.91446 1.74972 1.60602 1.86346 1.20496 1.00128 0.93091 1.01743 1.18994 0.93080 0.95019 1.02478 0.90966 0.93725 0.93253 0.92028 0.91199 0.93078 0.87176 0.83870 0.77094 0.81226 0.81934 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 8.58 71.99 0.62 -4.34 16 2 C -0.14 -6.37 5.32 30.60 0.16 -6.21 16 3 C 0.20 10.38 1.83 29.85 0.05 10.44 16 4 H 0.02 1.23 5.83 -2.39 -0.01 1.22 16 5 C -0.62 -36.91 9.17 25.60 0.23 -36.68 16 6 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 7 C 0.00 0.08 5.31 84.66 0.45 0.53 16 8 N -0.92 -57.52 13.69 21.45 0.29 -57.23 16 9 Si 1.06 51.01 26.28 68.60 1.80 52.81 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.24 -9.94 5.69 99.48 0.57 -9.37 16 13 O -0.36 -16.84 9.81 -51.44 -0.50 -17.34 16 14 C 0.44 17.03 6.43 71.23 0.46 17.49 16 15 O -0.53 -22.83 13.18 21.96 0.29 -22.54 16 16 C -0.03 -0.80 6.34 29.10 0.18 -0.62 16 17 C -0.20 -4.86 4.81 -18.62 -0.09 -4.95 16 18 C 0.10 1.71 11.73 83.00 0.97 2.68 16 19 N -0.57 -8.17 6.08 -187.58 -1.14 -9.31 16 20 H 0.44 2.61 8.96 -92.71 -0.83 1.78 16 21 C 0.08 1.58 7.27 38.99 0.28 1.87 16 22 C -0.08 -1.42 10.06 22.35 0.22 -1.19 16 23 C -0.14 -2.77 9.99 22.34 0.22 -2.55 16 24 C 0.05 1.44 7.29 22.35 0.16 1.60 16 25 F -0.15 -4.59 17.26 44.97 0.78 -3.82 16 26 C -0.13 -4.10 10.07 22.51 0.23 -3.87 16 27 C -0.09 -2.50 6.35 -20.20 -0.13 -2.63 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.04 1.70 7.83 -2.38 -0.02 1.68 16 30 H 0.05 1.71 6.04 -2.39 -0.01 1.69 16 31 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.07 3.16 4.77 -2.39 -0.01 3.14 16 33 H 0.26 16.38 8.73 -92.71 -0.81 15.57 16 34 H 0.11 2.81 8.14 -2.39 -0.02 2.80 16 35 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 39 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -78.83 331.78 5.64 -73.19 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.09 Total: 12.69 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 4.04 Total: -28.45 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -0.85 Total: -66.54 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.22 Total: -39.88 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.78 Total: -3.82 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 1.80 Total: 52.81 kcal Total: -78.83 5.64 -73.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187924247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.254 kcal (2) G-P(sol) polarization free energy of solvation -78.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds