Wall clock time and date at job start Tue Mar 31 2020 08:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33014 * 120.00183 * 2 1 4 4 C 1.50701 * 119.99570 * 5.07938 * 3 2 1 5 5 C 1.53003 * 109.47028 * 95.38964 * 4 3 2 6 6 C 1.47063 * 120.00350 * 185.07649 * 3 2 1 7 7 O 1.21641 * 119.99533 * 359.97438 * 6 3 2 8 8 N 1.34772 * 120.00160 * 180.02562 * 6 3 2 9 9 C 1.40043 * 120.00004 * 174.56097 * 8 6 3 10 10 C 1.38674 * 120.10445 * 335.42315 * 9 8 6 11 11 C 1.38249 * 120.00930 * 180.02562 * 10 9 8 12 12 C 1.38305 * 120.20951 * 0.02562 * 11 10 9 13 13 C 1.38200 * 120.20649 * 359.97438 * 12 11 10 14 14 C 1.38782 * 119.98904 * 359.71933 * 13 12 11 15 15 S 1.76206 * 120.10552 * 180.27353 * 14 13 12 16 16 C 1.81401 * 102.99758 * 0.29978 * 15 14 13 17 17 C 1.50701 * 109.46616 * 179.97438 * 16 15 14 18 18 H 1.07991 * 120.00348 * 0.02562 * 17 16 15 19 19 C 1.37890 * 119.99619 * 180.02562 * 17 16 15 20 20 N 1.31507 * 119.99840 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99854 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47034 * 90.00442 * 21 19 17 23 23 H 1.48504 * 109.47088 * 210.00014 * 21 19 17 24 24 H 1.48494 * 109.47379 * 330.00319 * 21 19 17 25 25 H 1.08999 * 109.47652 * 55.05526 * 1 2 3 26 26 H 1.08996 * 109.47236 * 295.05483 * 1 2 3 27 27 H 1.09008 * 109.47122 * 175.05585 * 1 2 3 28 28 H 1.07997 * 119.99783 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46762 * 215.38649 * 4 3 2 30 30 H 1.08998 * 109.47281 * 335.38603 * 4 3 2 31 31 H 1.09004 * 109.46896 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47168 * 299.99117 * 5 4 3 33 33 H 1.08998 * 109.46846 * 60.00246 * 5 4 3 34 34 H 0.96993 * 119.99922 * 354.56484 * 8 6 3 35 35 H 1.08002 * 119.99809 * 359.97438 * 10 9 8 36 36 H 1.07996 * 119.89461 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.89555 * 179.97438 * 12 11 10 38 38 H 1.07997 * 120.00379 * 179.97438 * 13 12 11 39 39 H 1.08991 * 109.47240 * 300.00064 * 16 15 14 40 40 H 1.09002 * 109.46832 * 60.00565 * 16 15 14 41 41 H 0.97000 * 120.00216 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1519 0.0000 4 6 1.4230 2.4544 0.1156 5 6 1.3967 2.8995 1.5792 6 6 3.6384 1.1545 -0.1127 7 8 4.2430 0.1030 -0.2054 8 7 4.3123 2.3216 -0.1122 9 6 5.7127 2.3215 -0.1045 10 6 6.4054 1.2319 0.4012 11 6 7.7879 1.2342 0.4083 12 6 8.4846 2.3212 -0.0874 13 6 7.8031 3.4118 -0.5935 14 6 6.4154 3.4158 -0.6106 15 16 5.5434 4.8016 -1.2617 16 6 6.8775 5.9188 -1.7745 17 6 6.2840 7.1727 -2.3632 18 1 5.2117 7.2863 -2.4225 19 6 7.1102 8.1749 -2.8261 20 7 6.5924 9.2693 -3.3394 21 14 8.9650 7.9785 -2.7228 22 1 9.4644 7.3341 -3.9640 23 1 9.5963 9.3140 -2.5699 24 1 9.3087 7.1316 -1.5525 25 1 -0.3634 0.5886 -0.8423 26 1 -0.3633 0.4352 0.9309 27 1 -0.3634 -1.0239 -0.0886 28 1 2.0469 -0.9353 -0.0004 29 1 1.9209 3.2146 -0.4865 30 1 0.4020 2.3193 -0.2416 31 1 0.8552 3.8419 1.6627 32 1 0.8987 2.1395 2.1812 33 1 2.4176 3.0347 1.9362 34 1 3.8273 3.1616 -0.1170 35 1 5.8649 0.3817 0.7904 36 1 8.3256 0.3844 0.8023 37 1 9.5645 2.3178 -0.0790 38 1 8.3504 4.2591 -0.9794 39 1 7.4880 6.1768 -0.9093 40 1 7.4976 5.4248 -2.5226 41 1 7.1735 9.9742 -3.6654 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188781424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:45 Heat of formation + Delta-G solvation = -7.212290 kcal Electronic energy + Delta-G solvation = -21976.175002 eV Core-core repulsion = 18754.088451 eV Total energy + Delta-G solvation = -3222.086551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60558 -38.41689 -36.30039 -34.82233 -33.19399 -31.58827 -30.92697 -29.70533 -29.36883 -27.70147 -23.65722 -23.46214 -22.79925 -22.47105 -20.88756 -18.81090 -17.84440 -17.16695 -16.84385 -16.69259 -15.50208 -15.17795 -14.96675 -14.49768 -14.27090 -14.10443 -13.81756 -13.59505 -13.41967 -13.31097 -13.19032 -12.79155 -12.59617 -12.51900 -12.45075 -12.31008 -11.88046 -11.40487 -11.17184 -11.11913 -10.93230 -10.60196 -10.38113 -10.29564 -9.82372 -9.71067 -9.33866 -9.29481 -9.25965 -8.80817 -8.07924 -6.73165 -6.29715 -4.33905 1.01790 1.52832 1.66754 2.20731 3.07847 3.14381 3.14875 3.21491 3.22618 3.39424 4.00948 4.21124 4.48639 4.55206 4.85455 4.91251 5.01589 5.10653 5.14052 5.20149 5.26080 5.32016 5.42061 5.46477 5.58503 5.66500 5.70697 5.74210 5.79834 5.99977 6.08890 6.20085 6.26358 6.40019 6.41824 6.46124 6.50506 6.61819 6.74735 7.18585 7.26575 7.45248 8.09142 8.15550 8.69893 9.24992 10.81887 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.003938 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.697192 B = 7108.681023 C = 8532.993186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 C -0.185 4.185 4 C -0.095 4.095 5 C -0.149 4.149 6 C 0.555 3.445 7 O -0.530 6.530 8 N -0.655 5.655 9 C 0.154 3.846 10 C -0.116 4.116 11 C -0.120 4.120 12 C -0.119 4.119 13 C -0.118 4.118 14 C -0.105 4.105 15 S -0.133 6.133 16 C 0.034 3.966 17 C -0.521 4.521 18 H 0.085 0.915 19 C 0.084 3.916 20 N -0.886 5.886 21 Si 0.876 3.124 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.264 1.264 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.127 0.873 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.415 0.585 35 H 0.145 0.855 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.664 -16.290 9.316 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 C -0.188 4.188 4 C -0.132 4.132 5 C -0.206 4.206 6 C 0.346 3.654 7 O -0.409 6.409 8 N -0.299 5.299 9 C 0.053 3.947 10 C -0.138 4.138 11 C -0.142 4.142 12 C -0.139 4.139 13 C -0.143 4.143 14 C -0.221 4.221 15 S 0.114 5.886 16 C -0.114 4.114 17 C -0.560 4.560 18 H 0.103 0.897 19 C -0.122 4.122 20 N -0.523 5.523 21 Si 0.702 3.298 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.189 1.189 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.145 0.855 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.254 0.746 35 H 0.162 0.838 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.496 -16.506 9.026 20.643 hybrid contribution 2.272 0.338 -0.029 2.297 sum -6.224 -16.169 8.997 19.522 Atomic orbital electron populations 1.21011 0.91970 1.03039 1.02813 1.23572 0.96342 0.97699 0.91149 1.21363 0.92079 0.96989 1.08372 1.20642 1.00624 0.93847 0.98113 1.21749 1.02456 1.01347 0.95094 1.18474 0.87890 0.83180 0.75903 1.90732 1.69676 1.31421 1.49038 1.43489 1.04906 1.09957 1.71574 1.17221 0.82015 0.95167 1.00291 1.21257 0.94270 0.98249 0.99999 1.20956 0.93609 0.98397 1.01188 1.21015 0.99612 0.93609 0.99698 1.21116 0.92216 0.99547 1.01381 1.21910 0.96901 0.99424 1.03817 1.85119 1.18196 1.11617 1.73692 1.21720 0.93795 0.96532 0.99325 1.20387 0.95852 0.98205 1.41588 0.89690 1.24820 0.98808 0.94552 0.93977 1.69845 1.35885 1.06936 1.39657 0.86837 0.85440 0.78197 0.79321 1.19680 1.20601 1.18912 0.90469 0.90590 0.91383 0.85542 0.90793 0.89959 0.91719 0.92520 0.92466 0.74648 0.83765 0.86032 0.86125 0.85322 0.93819 0.94269 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 8.83 36.00 0.32 -0.51 16 2 C -0.07 -0.64 9.83 -36.12 -0.36 -0.99 16 3 C -0.19 -2.05 5.25 -102.86 -0.54 -2.59 16 4 C -0.09 -0.87 5.28 -27.88 -0.15 -1.02 16 5 C -0.15 -1.27 9.89 37.16 0.37 -0.90 16 6 C 0.56 8.11 7.56 -12.68 -0.10 8.01 16 7 O -0.53 -8.98 13.37 5.24 0.07 -8.91 16 8 N -0.66 -9.97 5.12 -10.79 -0.06 -10.03 16 9 C 0.15 2.64 6.44 -83.46 -0.54 2.10 16 10 C -0.12 -1.86 8.72 -39.42 -0.34 -2.20 16 11 C -0.12 -1.72 10.04 -39.55 -0.40 -2.11 16 12 C -0.12 -1.77 10.04 -39.57 -0.40 -2.16 16 13 C -0.12 -2.06 9.36 -39.39 -0.37 -2.43 16 14 C -0.11 -1.94 6.12 -38.89 -0.24 -2.18 16 15 S -0.13 -2.70 20.55 -107.50 -2.21 -4.91 16 16 C 0.03 0.79 3.16 36.01 0.11 0.90 16 17 C -0.52 -14.28 9.68 -34.44 -0.33 -14.61 16 18 H 0.09 2.53 7.96 -52.49 -0.42 2.11 16 19 C 0.08 2.32 5.47 -17.82 -0.10 2.23 16 20 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 21 Si 0.88 20.34 27.47 -169.99 -4.67 15.67 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 25 H 0.08 0.45 7.36 -51.93 -0.38 0.07 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.13 1.27 7.50 -52.49 -0.39 0.88 16 29 H 0.07 0.74 6.90 -51.93 -0.36 0.38 16 30 H 0.08 0.61 6.20 -51.93 -0.32 0.29 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.41 5.90 5.84 -40.82 -0.24 5.66 16 35 H 0.14 2.30 5.76 -52.49 -0.30 2.00 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.13 2.29 5.88 -52.49 -0.31 1.98 16 39 H 0.04 1.00 6.79 -51.93 -0.35 0.65 16 40 H 0.04 0.90 7.19 -51.92 -0.37 0.52 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -30.78 349.42 -9.45 -40.23 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.58 Total: 6.36 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -3.05 Total: -18.48 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.72 Total: -35.23 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.07 Total: -8.91 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.67 kcal Atomic # 16 Polarization: -2.70 SS G_CDS: -2.21 Total: -4.91 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.78 -9.45 -40.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188781424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.018 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds