Wall clock time and date at job start Tue Mar 31 2020 08:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33014 * 120.00183 * 2 1 4 4 C 1.50701 * 119.99570 * 5.07938 * 3 2 1 5 5 C 1.53003 * 109.47028 * 95.38964 * 4 3 2 6 6 C 1.47063 * 120.00350 * 185.07649 * 3 2 1 7 7 O 1.21641 * 119.99533 * 359.97438 * 6 3 2 8 8 N 1.34772 * 120.00160 * 180.02562 * 6 3 2 9 9 C 1.40043 * 120.00004 * 174.56097 * 8 6 3 10 10 C 1.38674 * 120.10445 * 335.42315 * 9 8 6 11 11 C 1.38249 * 120.00930 * 180.02562 * 10 9 8 12 12 C 1.38305 * 120.20951 * 0.02562 * 11 10 9 13 13 C 1.38200 * 120.20649 * 359.97438 * 12 11 10 14 14 C 1.38782 * 119.98904 * 359.71933 * 13 12 11 15 15 S 1.76206 * 120.10552 * 180.27353 * 14 13 12 16 16 C 1.81401 * 102.99758 * 0.29978 * 15 14 13 17 17 C 1.50701 * 109.46616 * 179.97438 * 16 15 14 18 18 H 1.07991 * 120.00348 * 0.02562 * 17 16 15 19 19 C 1.37890 * 119.99619 * 180.02562 * 17 16 15 20 20 N 1.31507 * 119.99840 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99854 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47034 * 90.00442 * 21 19 17 23 23 H 1.48504 * 109.47088 * 210.00014 * 21 19 17 24 24 H 1.48494 * 109.47379 * 330.00319 * 21 19 17 25 25 H 1.08999 * 109.47652 * 55.05526 * 1 2 3 26 26 H 1.08996 * 109.47236 * 295.05483 * 1 2 3 27 27 H 1.09008 * 109.47122 * 175.05585 * 1 2 3 28 28 H 1.07997 * 119.99783 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46762 * 215.38649 * 4 3 2 30 30 H 1.08998 * 109.47281 * 335.38603 * 4 3 2 31 31 H 1.09004 * 109.46896 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47168 * 299.99117 * 5 4 3 33 33 H 1.08998 * 109.46846 * 60.00246 * 5 4 3 34 34 H 0.96993 * 119.99922 * 354.56484 * 8 6 3 35 35 H 1.08002 * 119.99809 * 359.97438 * 10 9 8 36 36 H 1.07996 * 119.89461 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.89555 * 179.97438 * 12 11 10 38 38 H 1.07997 * 120.00379 * 179.97438 * 13 12 11 39 39 H 1.08991 * 109.47240 * 300.00064 * 16 15 14 40 40 H 1.09002 * 109.46832 * 60.00565 * 16 15 14 41 41 H 0.97000 * 120.00216 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1519 0.0000 4 6 1.4230 2.4544 0.1156 5 6 1.3967 2.8995 1.5792 6 6 3.6384 1.1545 -0.1127 7 8 4.2430 0.1030 -0.2054 8 7 4.3123 2.3216 -0.1122 9 6 5.7127 2.3215 -0.1045 10 6 6.4054 1.2319 0.4012 11 6 7.7879 1.2342 0.4083 12 6 8.4846 2.3212 -0.0874 13 6 7.8031 3.4118 -0.5935 14 6 6.4154 3.4158 -0.6106 15 16 5.5434 4.8016 -1.2617 16 6 6.8775 5.9188 -1.7745 17 6 6.2840 7.1727 -2.3632 18 1 5.2117 7.2863 -2.4225 19 6 7.1102 8.1749 -2.8261 20 7 6.5924 9.2693 -3.3394 21 14 8.9650 7.9785 -2.7228 22 1 9.4644 7.3341 -3.9640 23 1 9.5963 9.3140 -2.5699 24 1 9.3087 7.1316 -1.5525 25 1 -0.3634 0.5886 -0.8423 26 1 -0.3633 0.4352 0.9309 27 1 -0.3634 -1.0239 -0.0886 28 1 2.0469 -0.9353 -0.0004 29 1 1.9209 3.2146 -0.4865 30 1 0.4020 2.3193 -0.2416 31 1 0.8552 3.8419 1.6627 32 1 0.8987 2.1395 2.1812 33 1 2.4176 3.0347 1.9362 34 1 3.8273 3.1616 -0.1170 35 1 5.8649 0.3817 0.7904 36 1 8.3256 0.3844 0.8023 37 1 9.5645 2.3178 -0.0790 38 1 8.3504 4.2591 -0.9794 39 1 7.4880 6.1768 -0.9093 40 1 7.4976 5.4248 -2.5226 41 1 7.1735 9.9742 -3.6654 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188781424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:45 Heat of formation + Delta-G solvation = -23.800251 kcal Electronic energy + Delta-G solvation = -21976.894310 eV Core-core repulsion = 18754.088451 eV Total energy + Delta-G solvation = -3222.805859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.76025 -39.59682 -37.15380 -36.02381 -35.26327 -32.32772 -32.29074 -31.32375 -30.78526 -28.49423 -25.16611 -24.23849 -24.20490 -23.85251 -22.06752 -19.93932 -19.30345 -18.64568 -18.03599 -18.00043 -16.67738 -16.57873 -16.28665 -15.93336 -15.49118 -15.09606 -15.06525 -14.95584 -14.81628 -14.52673 -14.38801 -14.07949 -13.85636 -13.44948 -13.24543 -13.10926 -12.96429 -12.76775 -12.72143 -12.23166 -12.11881 -11.91612 -11.85310 -11.78698 -11.58998 -11.03886 -10.94494 -10.86522 -10.61650 -10.08179 -9.33734 -8.41834 -8.26242 -6.52709 -0.02124 0.26439 0.55688 0.64907 1.32786 1.33447 1.43590 1.68972 2.01401 2.08714 2.25755 2.76433 2.91315 3.53797 3.80540 3.84052 4.10788 4.15931 4.29124 4.35707 4.43226 4.44147 4.46909 4.51092 4.60412 4.62913 4.71225 4.82845 4.84911 4.99904 5.03400 5.13853 5.15327 5.22920 5.26923 5.31914 5.40894 5.48373 5.52103 5.59778 5.97653 6.00297 6.29952 6.50789 6.94508 7.10456 8.73411 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.003938 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.697192 B = 7108.681023 C = 8532.993186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.046 4.046 3 C -0.209 4.209 4 C -0.090 4.090 5 C -0.147 4.147 6 C 0.550 3.450 7 O -0.560 6.560 8 N -0.657 5.657 9 C 0.146 3.854 10 C -0.127 4.127 11 C -0.105 4.105 12 C -0.114 4.114 13 C -0.130 4.130 14 C -0.127 4.127 15 S -0.145 6.145 16 C 0.038 3.962 17 C -0.533 4.533 18 H 0.043 0.957 19 C 0.027 3.973 20 N -0.934 5.934 21 Si 0.945 3.055 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.243 1.243 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.417 0.583 35 H 0.144 0.856 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.124 0.876 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.816 -18.481 10.424 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.065 4.065 3 C -0.212 4.212 4 C -0.127 4.127 5 C -0.205 4.205 6 C 0.343 3.657 7 O -0.441 6.441 8 N -0.301 5.301 9 C 0.045 3.955 10 C -0.149 4.149 11 C -0.126 4.126 12 C -0.134 4.134 13 C -0.155 4.155 14 C -0.242 4.242 15 S 0.100 5.900 16 C -0.110 4.110 17 C -0.572 4.572 18 H 0.062 0.938 19 C -0.175 4.175 20 N -0.572 5.572 21 Si 0.767 3.233 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.167 1.167 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.136 0.864 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.255 0.745 35 H 0.162 0.838 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.142 0.858 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.664 -18.715 10.150 22.627 hybrid contribution 1.898 0.854 -0.328 2.107 sum -5.766 -17.861 9.822 21.183 Atomic orbital electron populations 1.21112 0.89188 1.04493 1.03896 1.23866 0.98239 0.96601 0.87820 1.21325 0.90090 0.98536 1.11247 1.20642 1.01331 0.92446 0.98314 1.21747 1.01625 1.02229 0.94856 1.19099 0.89339 0.82410 0.74850 1.90696 1.70611 1.32120 1.50638 1.43583 1.04471 1.10457 1.71600 1.17459 0.82941 0.95095 1.00020 1.21435 0.95323 0.97814 1.00299 1.21400 0.92926 0.99118 0.99151 1.21362 1.01301 0.92456 0.98324 1.21269 0.91808 1.00498 1.01889 1.21854 0.97511 0.98941 1.05933 1.85013 1.17587 1.12626 1.74810 1.21471 0.94646 0.95529 0.99306 1.20564 0.94263 1.00356 1.42028 0.93839 1.25798 1.04476 0.93918 0.93266 1.69988 1.38106 1.08101 1.41003 0.85735 0.78446 0.78735 0.80373 1.18689 1.20058 1.16671 0.89506 0.89020 0.89842 0.86426 0.92354 0.87677 0.90891 0.91190 0.94262 0.74453 0.83817 0.82392 0.82704 0.85834 0.93231 0.93725 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.83 71.23 0.63 -0.62 16 2 C -0.05 -0.78 9.83 24.52 0.24 -0.54 16 3 C -0.21 -4.52 5.25 -18.71 -0.10 -4.61 16 4 C -0.09 -1.59 5.28 29.85 0.16 -1.43 16 5 C -0.15 -2.39 9.89 71.98 0.71 -1.68 16 6 C 0.55 16.24 7.56 86.56 0.65 16.89 16 7 O -0.56 -19.07 13.37 -4.16 -0.06 -19.13 16 8 N -0.66 -20.46 5.12 -306.28 -1.57 -22.03 16 9 C 0.15 4.99 6.44 38.25 0.25 5.24 16 10 C -0.13 -3.92 8.72 22.38 0.20 -3.72 16 11 C -0.10 -2.69 10.04 22.29 0.22 -2.46 16 12 C -0.11 -3.04 10.04 22.28 0.22 -2.82 16 13 C -0.13 -4.37 9.36 22.39 0.21 -4.16 16 14 C -0.13 -4.70 6.12 22.71 0.14 -4.56 16 15 S -0.14 -6.07 20.55 -56.49 -1.16 -7.23 16 16 C 0.04 1.81 3.16 71.24 0.23 2.03 16 17 C -0.53 -30.23 9.68 25.60 0.25 -29.98 16 18 H 0.04 2.75 7.96 -2.91 -0.02 2.72 16 19 C 0.03 1.49 5.47 84.66 0.46 1.96 16 20 N -0.93 -56.35 13.96 21.45 0.30 -56.05 16 21 Si 0.95 41.68 27.47 68.60 1.88 43.57 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 25 H 0.09 0.74 7.36 -2.39 -0.02 0.73 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.66 16 27 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.12 2.25 7.50 -2.91 -0.02 2.22 16 29 H 0.06 1.20 6.90 -2.38 -0.02 1.18 16 30 H 0.10 1.34 6.20 -2.39 -0.01 1.33 16 31 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.42 12.38 5.84 -92.71 -0.54 11.84 16 35 H 0.14 4.48 5.76 -2.91 -0.02 4.46 16 36 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.12 4.22 5.88 -2.91 -0.02 4.20 16 39 H 0.05 2.25 6.79 -2.39 -0.02 2.23 16 40 H 0.04 2.03 7.19 -2.39 -0.02 2.01 16 41 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -69.15 349.42 4.32 -64.83 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.45 Total: 26.51 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: 4.47 Total: -30.47 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -1.27 Total: -78.08 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.06 Total: -19.13 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.88 Total: 43.57 kcal Atomic # 16 Polarization: -6.07 SS G_CDS: -1.16 Total: -7.23 kcal Total: -69.15 4.32 -64.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188781424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.032 kcal (2) G-P(sol) polarization free energy of solvation -69.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds