Wall clock time and date at job start Tue Mar 31 2020 08:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.30470 * 2 1 4 4 N 1.46497 * 109.47217 * 65.71966 * 3 2 1 5 5 C 1.34778 * 120.00094 * 180.02562 * 4 3 2 6 6 O 1.21578 * 120.00180 * 0.02562 * 5 4 3 7 7 C 1.47647 * 119.99779 * 180.02562 * 5 4 3 8 8 C 1.40006 * 119.89550 * 179.97438 * 7 5 4 9 9 C 1.36311 * 120.11180 * 180.02562 * 8 7 5 10 10 C 1.40892 * 119.88945 * 359.97438 * 9 8 7 11 11 C 1.41109 * 120.10512 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00552 * 208.66518 * 11 10 9 13 13 C 1.40229 * 119.99753 * 28.66782 * 11 10 9 14 14 N 1.30652 * 119.99796 * 197.84251 * 13 11 10 15 15 Si 1.86794 * 120.00084 * 17.84111 * 13 11 10 16 16 H 1.48500 * 109.47421 * 270.00167 * 15 13 11 17 17 H 1.48495 * 109.47352 * 30.00226 * 15 13 11 18 18 H 1.48505 * 109.47215 * 149.99918 * 15 13 11 19 19 C 1.40889 * 119.79173 * 0.27877 * 10 9 8 20 20 C 1.36321 * 119.89115 * 359.43911 * 19 10 9 21 21 C 1.53712 * 110.42620 * 237.77199 * 2 1 3 22 22 C 1.52938 * 112.48901 * 238.25478 * 21 2 1 23 23 C 1.55147 * 108.96024 * 30.10104 * 22 21 2 24 24 S 1.83390 * 110.34176 * 122.17415 * 2 1 3 25 25 H 1.08998 * 109.47444 * 60.69262 * 1 2 3 26 26 H 1.08994 * 109.47396 * 180.70131 * 1 2 3 27 27 H 1.09001 * 109.46701 * 300.69828 * 1 2 3 28 28 H 1.09000 * 109.46964 * 305.72194 * 3 2 1 29 29 H 1.09000 * 109.47097 * 185.72193 * 3 2 1 30 30 H 0.97003 * 119.99719 * 0.02562 * 4 3 2 31 31 H 1.08006 * 119.94484 * 0.02562 * 8 7 5 32 32 H 1.08005 * 120.05791 * 179.97438 * 9 8 7 33 33 H 0.96998 * 120.00054 * 355.45268 * 14 13 11 34 34 H 1.08002 * 120.05413 * 179.72170 * 19 10 9 35 35 H 1.07996 * 119.94363 * 180.25123 * 20 19 10 36 36 H 1.09001 * 108.88615 * 359.05210 * 21 2 1 37 37 H 1.09001 * 108.88940 * 117.46254 * 21 2 1 38 38 H 1.09002 * 109.60376 * 270.16891 * 22 21 2 39 39 H 1.08995 * 109.60562 * 150.03224 * 22 21 2 40 40 H 1.09005 * 111.13174 * 200.64854 * 23 22 21 41 41 H 1.09003 * 111.13253 * 76.47588 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4349 0.0000 4 7 1.6977 2.0900 1.2590 5 6 2.0621 3.3681 1.4833 6 8 2.6919 3.9775 0.6406 7 6 1.6966 4.0280 2.7524 8 6 2.0767 5.3556 2.9834 9 6 1.7419 5.9690 4.1537 10 6 1.0117 5.2650 5.1316 11 6 0.6623 5.8958 6.3446 12 1 0.5384 5.3087 7.2425 13 6 0.4760 7.2851 6.3840 14 7 0.4997 7.9151 7.5284 15 14 0.1937 8.2349 4.8006 16 1 1.4998 8.6757 4.2482 17 1 -0.4912 7.3611 3.8145 18 1 -0.6519 9.4233 5.0802 19 6 0.6361 3.9276 4.8969 20 6 0.9705 3.3244 3.7210 21 6 2.0665 -0.7682 -1.2185 22 6 2.9674 -1.9387 -0.8220 23 6 2.5079 -2.4841 0.5559 24 16 2.1675 -0.9156 1.4555 25 1 -0.3634 0.5030 -0.8961 26 1 -0.3634 -1.0275 0.0126 27 1 -0.3633 0.5247 0.8837 28 1 1.6243 1.9839 -0.8343 29 1 3.1460 1.4208 -0.1025 30 1 1.1950 1.6039 1.9312 31 1 2.6360 5.8945 2.2330 32 1 2.0360 6.9930 4.3312 33 1 0.5802 7.4152 8.3557 34 1 0.0802 3.3825 5.6454 35 1 0.6795 2.3006 3.5385 36 1 1.2233 -1.1509 -1.7936 37 1 2.6353 -0.0819 -1.8459 38 1 4.0007 -1.5984 -0.7545 39 1 2.8931 -2.7273 -1.5706 40 1 3.3041 -3.0499 1.0399 41 1 1.6041 -3.0856 0.4589 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270403131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:59 Heat of formation + Delta-G solvation = -38.814709 kcal Electronic energy + Delta-G solvation = -22108.199616 eV Core-core repulsion = 18884.742681 eV Total energy + Delta-G solvation = -3223.456935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.39225 -37.82024 -37.04344 -34.40613 -33.92120 -31.86200 -30.45387 -29.89664 -27.46212 -26.68609 -25.00235 -22.71972 -21.89694 -20.95060 -20.61947 -19.58681 -18.32202 -17.50107 -16.38949 -16.11025 -15.26382 -14.98201 -14.69034 -14.46484 -14.39298 -14.04968 -13.88767 -13.55182 -13.36511 -13.00436 -12.89881 -12.69562 -12.44583 -12.28835 -11.94304 -11.78054 -11.40854 -11.37508 -11.28645 -11.17037 -10.99852 -10.69833 -10.23935 -10.07343 -10.00610 -9.48807 -9.24391 -9.06966 -8.69371 -7.94042 -7.87967 -7.87252 -7.44715 -4.76802 1.54525 2.05115 2.09397 2.68953 3.12751 3.25983 3.49067 3.64268 3.74374 3.90204 4.17696 4.26825 4.44462 4.52936 4.60662 4.76267 4.85259 5.14599 5.23792 5.30933 5.36997 5.46852 5.48330 5.58064 5.62106 5.65526 5.77174 5.80655 5.88648 5.99715 6.06752 6.43950 6.69175 6.79967 6.84688 7.18132 7.27888 7.39228 7.48321 7.65416 7.79417 8.08646 8.21057 8.35336 8.54510 8.94274 9.77099 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.030569 B = 0.003122 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.736488 B = 8965.776815 C = 9417.047367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.026 4.026 3 C 0.148 3.852 4 N -0.737 5.737 5 C 0.574 3.426 6 O -0.572 6.572 7 C -0.286 4.286 8 C -0.006 4.006 9 C -0.260 4.260 10 C 0.112 3.888 11 C -0.493 4.493 12 H 0.081 0.919 13 C 0.042 3.958 14 N -0.796 5.796 15 Si 1.075 2.925 16 H -0.272 1.272 17 H -0.260 1.260 18 H -0.288 1.288 19 C -0.223 4.223 20 C -0.040 4.040 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.075 4.075 24 S -0.273 6.273 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.398 0.602 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.290 0.710 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.013 -17.268 -13.860 22.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.136 4.136 3 C 0.022 3.978 4 N -0.391 5.391 5 C 0.368 3.632 6 O -0.453 6.453 7 C -0.290 4.290 8 C -0.025 4.025 9 C -0.279 4.279 10 C 0.109 3.891 11 C -0.520 4.520 12 H 0.099 0.901 13 C -0.180 4.180 14 N -0.417 5.417 15 Si 0.900 3.100 16 H -0.199 1.199 17 H -0.184 1.184 18 H -0.215 1.215 19 C -0.242 4.242 20 C -0.060 4.060 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.223 4.223 24 S -0.045 6.045 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.234 0.766 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.374 -14.998 -13.749 20.350 hybrid contribution -0.129 -2.313 0.128 2.320 sum 0.245 -17.310 -13.621 22.028 Atomic orbital electron populations 1.22047 0.91463 1.02607 1.03108 1.23554 0.98909 0.97069 0.94047 1.21205 1.00232 0.88372 0.88014 1.45888 1.59991 1.14000 1.19213 1.18476 0.77573 0.80101 0.87030 1.90644 1.42227 1.64858 1.47605 1.18897 1.16927 0.96902 0.96294 1.20415 0.94080 0.92721 0.95269 1.20860 1.08780 1.01047 0.97223 1.17885 0.87436 0.91980 0.91825 1.20913 1.40212 0.94688 0.96157 0.90059 1.27531 0.90370 0.95726 1.04419 1.70477 1.30307 1.40770 1.00130 0.83555 0.78031 0.75506 0.72876 1.19869 1.18407 1.21512 1.20700 1.08476 0.97112 0.97942 1.20452 0.95133 0.96640 0.93726 1.22089 1.00266 0.96962 0.96754 1.22365 1.00794 0.97340 0.95744 1.24338 1.04370 0.96716 0.96909 1.88184 1.84920 1.12777 1.18655 0.91418 0.91776 0.91329 0.90903 0.91029 0.76588 0.87455 0.87229 0.89849 0.88066 0.88895 0.90499 0.89797 0.90299 0.90159 0.87718 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.26 37.16 0.31 -0.91 16 2 C -0.03 -0.26 0.84 -90.25 -0.08 -0.33 16 3 C 0.15 1.95 4.39 -4.04 -0.02 1.94 16 4 N -0.74 -11.96 4.97 -61.32 -0.30 -12.27 16 5 C 0.57 11.84 7.76 -12.42 -0.10 11.74 16 6 O -0.57 -13.21 16.32 5.30 0.09 -13.12 16 7 C -0.29 -6.33 5.89 -104.73 -0.62 -6.94 16 8 C -0.01 -0.13 9.52 -39.61 -0.38 -0.51 16 9 C -0.26 -6.32 7.21 -39.27 -0.28 -6.60 16 10 C 0.11 2.80 5.14 -106.80 -0.55 2.25 16 11 C -0.49 -12.72 9.43 -37.75 -0.36 -13.08 16 12 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 13 C 0.04 1.05 5.42 -17.31 -0.09 0.96 16 14 N -0.80 -20.47 13.64 55.56 0.76 -19.71 16 15 Si 1.08 23.81 24.90 -169.99 -4.23 19.58 16 16 H -0.27 -5.79 6.43 56.52 0.36 -5.42 16 17 H -0.26 -5.77 7.03 56.52 0.40 -5.37 16 18 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.22 -5.08 9.73 -39.27 -0.38 -5.46 16 20 C -0.04 -0.84 9.47 -39.61 -0.38 -1.22 16 21 C -0.12 -0.91 5.74 -26.39 -0.15 -1.06 16 22 C -0.12 -0.82 6.34 -25.63 -0.16 -0.98 16 23 C -0.07 -0.57 7.52 38.29 0.29 -0.28 16 24 S -0.27 -3.13 21.15 -107.50 -2.27 -5.40 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.71 7.28 -51.93 -0.38 0.34 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.40 6.06 5.10 -40.82 -0.21 5.85 16 31 H 0.11 2.41 7.63 -52.48 -0.40 2.01 16 32 H 0.11 2.61 4.38 -52.48 -0.23 2.38 16 33 H 0.29 7.18 8.72 -40.82 -0.36 6.83 16 34 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.09 1.64 6.37 -52.49 -0.33 1.30 16 36 H 0.08 0.47 7.62 -51.93 -0.40 0.07 16 37 H 0.08 0.61 7.62 -51.93 -0.40 0.21 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 340.22 15.07 5.13 5.13 Total: -1.00 -28.96 340.22 -9.55 -38.51 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.76 Total: 7.78 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.94 Total: -20.49 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.45 Total: -31.98 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -4.23 Total: 19.58 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.27 Total: -5.40 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.96 -9.55 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270403131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.308 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds