Wall clock time and date at job start Tue Mar 31 2020 08:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.19522 * 2 1 4 4 C 1.53287 * 109.30557 * 240.73917 * 2 1 3 5 5 N 1.47225 * 107.65342 * 287.23602 * 4 2 1 6 6 C 1.34784 * 121.33306 * 115.81406 * 5 4 2 7 7 O 1.21283 * 119.99649 * 359.71794 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.71676 * 6 5 4 9 9 S 1.81005 * 109.47244 * 179.97438 * 8 6 5 10 10 C 1.76192 * 100.00090 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00308 * 0.02562 * 10 9 8 12 12 C 1.38797 * 119.99747 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00171 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99848 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47396 * 59.99622 * 14 12 10 16 16 H 1.48504 * 109.46972 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46804 * 299.99684 * 14 12 10 18 18 C 1.46681 * 117.33585 * 295.54532 * 5 4 2 19 19 C 1.50810 * 109.67180 * 44.66251 * 18 5 4 20 20 C 1.38839 * 117.80403 * 168.47463 * 19 18 5 21 21 C 1.37957 * 120.50724 * 179.50506 * 20 19 18 22 22 C 1.38266 * 119.71401 * 359.92432 * 21 20 19 23 23 C 1.37906 * 119.82976 * 0.26961 * 22 21 20 24 24 C 1.37660 * 122.34878 * 348.40679 * 19 18 5 25 25 H 1.09001 * 109.47452 * 300.65633 * 1 2 3 26 26 H 1.09002 * 109.47758 * 60.65614 * 1 2 3 27 27 H 1.09006 * 109.47166 * 180.65960 * 1 2 3 28 28 H 1.08998 * 109.47179 * 179.34773 * 3 2 1 29 29 H 1.09002 * 109.47162 * 299.34579 * 3 2 1 30 30 H 1.08995 * 109.47000 * 59.34376 * 3 2 1 31 31 H 1.09004 * 109.89464 * 167.71712 * 4 2 1 32 32 H 1.09001 * 109.90346 * 46.76477 * 4 2 1 33 33 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 34 34 H 1.09002 * 109.47054 * 60.00213 * 8 6 5 35 35 H 0.97000 * 119.99868 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.43999 * 164.72789 * 18 5 4 37 37 H 1.09002 * 109.43091 * 284.60637 * 18 5 4 38 38 H 1.08000 * 119.74630 * 359.47837 * 20 19 18 39 39 H 1.07992 * 120.13884 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.08197 * 180.29118 * 22 21 20 41 41 H 1.08003 * 119.70941 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0330 1.4450 0.0000 4 6 2.0367 -0.7071 -1.2621 5 7 1.7920 -2.1492 -1.0946 6 6 0.9418 -2.8142 -1.9018 7 8 0.3564 -2.2233 -2.7845 8 6 0.7186 -4.2918 -1.7076 9 16 -0.4685 -4.8894 -2.9364 10 6 -0.5388 -6.5926 -2.4908 11 1 0.0555 -6.9605 -1.6675 12 6 -1.3582 -7.4616 -3.1979 13 7 -2.0829 -7.0133 -4.2011 14 14 -1.4333 -9.2673 -2.7251 15 1 -1.9036 -9.3925 -1.3221 16 1 -2.3755 -9.9765 -3.6277 17 1 -0.0810 -9.8682 -2.8494 18 6 2.5151 -2.8346 -0.0181 19 6 2.4636 -2.0019 1.2383 20 6 2.8791 -2.5925 2.4241 21 6 2.8649 -1.8788 3.6046 22 6 2.4348 -0.5647 3.6057 23 6 2.0181 0.0218 2.4292 24 6 2.0253 -0.6970 1.2396 25 1 -0.3634 0.5240 0.8840 26 1 -0.3635 0.5036 -0.8958 27 1 -0.3634 -1.0276 0.0118 28 1 3.1229 1.4503 0.0117 29 1 1.6768 1.9537 -0.8958 30 1 1.6576 1.9604 0.8840 31 1 3.1046 -0.5262 -1.3852 32 1 1.4968 -0.3403 -2.1351 33 1 1.6639 -4.8210 -1.8277 34 1 0.3262 -4.4714 -0.7066 35 1 -2.6552 -7.6207 -4.6954 36 1 2.0528 -3.8036 0.1697 37 1 3.5539 -2.9802 -0.3144 38 1 3.2157 -3.6188 2.4224 39 1 3.1890 -2.3442 4.5236 40 1 2.4256 0.0011 4.5257 41 1 1.6829 1.0485 2.4323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270636209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:22 Heat of formation + Delta-G solvation = -14.819214 kcal Electronic energy + Delta-G solvation = -22679.814529 eV Core-core repulsion = 19457.398117 eV Total energy + Delta-G solvation = -3222.416412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84543 -38.81084 -36.55430 -34.97557 -32.42738 -31.44628 -30.32713 -29.52943 -27.37131 -26.70491 -25.64616 -25.19671 -23.11919 -21.63525 -19.97362 -18.57553 -17.64971 -17.14923 -16.46592 -15.98261 -15.54690 -14.87731 -14.80333 -14.74895 -14.22296 -14.14496 -13.83698 -13.73674 -13.39310 -13.13777 -12.68417 -12.61954 -12.38470 -12.09553 -12.05256 -11.97443 -11.87001 -11.49343 -11.14897 -11.04670 -11.03589 -10.92138 -10.76005 -10.65868 -9.81633 -9.39585 -9.05793 -8.96108 -8.74869 -8.49733 -8.23039 -6.49945 -6.21234 -3.91937 1.18950 1.22021 2.90333 3.04530 3.23661 3.25748 3.29233 3.55924 3.60310 4.20461 4.37432 4.49082 4.57673 4.80217 4.86174 4.94206 4.98715 5.08245 5.13836 5.21305 5.24619 5.33678 5.40799 5.49749 5.53554 5.60901 5.74458 5.76679 5.79377 5.82969 5.86089 5.87732 5.94980 6.02178 6.11133 6.27772 6.31743 6.36622 6.48263 6.57895 6.83354 7.56250 7.59681 8.35148 8.54559 9.23925 10.86143 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020284 B = 0.003676 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.040286 B = 7615.902195 C = 8560.558495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.041 4.041 3 C -0.140 4.140 4 C 0.123 3.877 5 N -0.619 5.619 6 C 0.540 3.460 7 O -0.513 6.513 8 C -0.152 4.152 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.075 3.925 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.149 3.851 19 C -0.091 4.091 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.054 4.054 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.269 0.731 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.823 14.350 14.796 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.042 4.042 3 C -0.197 4.197 4 C 0.000 4.000 5 N -0.355 5.355 6 C 0.328 3.672 7 O -0.387 6.387 8 C -0.302 4.302 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.744 3.256 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C 0.025 3.975 19 C -0.091 4.091 20 C -0.132 4.132 21 C -0.140 4.140 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.054 4.054 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.790 15.164 13.297 22.873 hybrid contribution 0.697 -1.931 1.585 2.594 sum 11.486 13.233 14.882 22.990 Atomic orbital electron populations 1.21824 0.92733 1.02688 1.01745 1.19899 0.96703 0.95022 0.92553 1.21927 1.01147 0.94301 1.02359 1.21737 1.00569 0.80077 0.97646 1.48010 1.45270 1.09083 1.33090 1.20256 0.77462 0.88980 0.80500 1.90692 1.46719 1.69205 1.32076 1.23565 1.06086 0.93931 1.06653 1.85389 1.51518 1.07465 1.38851 1.22819 1.31318 0.93672 1.20621 0.91006 1.24979 0.94586 0.99384 0.94530 1.70006 1.25427 1.35842 1.19014 0.86238 0.78166 0.82684 0.78503 1.19937 1.20799 1.19919 1.20507 0.97476 0.95508 0.83995 1.19858 0.99946 0.94188 0.95157 1.21043 1.00198 1.00042 0.91930 1.21041 1.00419 0.94698 0.97873 1.21063 0.99674 0.95413 0.97901 1.21221 1.00304 0.99998 0.92078 1.19427 0.98084 0.93122 0.94807 0.92752 0.91835 0.92268 0.92340 0.91843 0.92014 0.91255 0.88244 0.89245 0.89305 0.92125 0.88287 0.90247 0.85792 0.86070 0.86252 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.26 37.15 0.31 -1.33 16 2 C -0.04 -0.45 0.68 -155.56 -0.11 -0.55 16 3 C -0.14 -1.18 7.89 37.16 0.29 -0.88 16 4 C 0.12 1.55 5.12 -3.50 -0.02 1.53 16 5 N -0.62 -9.09 2.64 -174.09 -0.46 -9.55 16 6 C 0.54 10.34 7.74 -10.98 -0.09 10.25 16 7 O -0.51 -11.64 15.35 5.56 0.09 -11.55 16 8 C -0.15 -3.11 4.57 36.00 0.16 -2.94 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 10 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 11 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 14 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 C 0.15 1.77 6.08 -5.04 -0.03 1.74 16 19 C -0.09 -1.03 5.82 -104.56 -0.61 -1.64 16 20 C -0.11 -1.14 9.62 -39.46 -0.38 -1.52 16 21 C -0.12 -1.12 10.05 -39.67 -0.40 -1.52 16 22 C -0.12 -1.11 10.04 -39.69 -0.40 -1.50 16 23 C -0.12 -1.15 8.97 -39.43 -0.35 -1.51 16 24 C -0.05 -0.61 4.74 -104.61 -0.50 -1.10 16 25 H 0.05 0.59 8.11 -51.93 -0.42 0.16 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.90 7.95 -51.93 -0.41 0.48 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.46 6.33 -51.93 -0.33 0.13 16 31 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.10 1.40 7.02 -51.93 -0.36 1.04 16 33 H 0.09 1.69 8.11 -51.92 -0.42 1.26 16 34 H 0.09 1.71 7.58 -51.91 -0.39 1.32 16 35 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.10 1.18 6.19 -51.93 -0.32 0.86 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.12 1.02 8.05 -52.49 -0.42 0.60 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.12 1.00 6.21 -52.48 -0.33 0.67 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -33.64 345.70 -9.49 -43.13 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.91 Total: -0.42 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -1.91 Total: -13.91 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.27 Total: -35.01 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.64 -9.49 -43.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270636209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.314 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds