Wall clock time and date at job start Tue Mar 31 2020 08:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.19522 * 2 1 4 4 C 1.53287 * 109.30557 * 240.73917 * 2 1 3 5 5 N 1.47225 * 107.65342 * 287.23602 * 4 2 1 6 6 C 1.34784 * 121.33306 * 115.81406 * 5 4 2 7 7 O 1.21283 * 119.99649 * 359.71794 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.71676 * 6 5 4 9 9 S 1.81005 * 109.47244 * 179.97438 * 8 6 5 10 10 C 1.76192 * 100.00090 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00308 * 0.02562 * 10 9 8 12 12 C 1.38797 * 119.99747 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00171 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99848 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47396 * 59.99622 * 14 12 10 16 16 H 1.48504 * 109.46972 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46804 * 299.99684 * 14 12 10 18 18 C 1.46681 * 117.33585 * 295.54532 * 5 4 2 19 19 C 1.50810 * 109.67180 * 44.66251 * 18 5 4 20 20 C 1.38839 * 117.80403 * 168.47463 * 19 18 5 21 21 C 1.37957 * 120.50724 * 179.50506 * 20 19 18 22 22 C 1.38266 * 119.71401 * 359.92432 * 21 20 19 23 23 C 1.37906 * 119.82976 * 0.26961 * 22 21 20 24 24 C 1.37660 * 122.34878 * 348.40679 * 19 18 5 25 25 H 1.09001 * 109.47452 * 300.65633 * 1 2 3 26 26 H 1.09002 * 109.47758 * 60.65614 * 1 2 3 27 27 H 1.09006 * 109.47166 * 180.65960 * 1 2 3 28 28 H 1.08998 * 109.47179 * 179.34773 * 3 2 1 29 29 H 1.09002 * 109.47162 * 299.34579 * 3 2 1 30 30 H 1.08995 * 109.47000 * 59.34376 * 3 2 1 31 31 H 1.09004 * 109.89464 * 167.71712 * 4 2 1 32 32 H 1.09001 * 109.90346 * 46.76477 * 4 2 1 33 33 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 34 34 H 1.09002 * 109.47054 * 60.00213 * 8 6 5 35 35 H 0.97000 * 119.99868 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.43999 * 164.72789 * 18 5 4 37 37 H 1.09002 * 109.43091 * 284.60637 * 18 5 4 38 38 H 1.08000 * 119.74630 * 359.47837 * 20 19 18 39 39 H 1.07992 * 120.13884 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.08197 * 180.29118 * 22 21 20 41 41 H 1.08003 * 119.70941 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0330 1.4450 0.0000 4 6 2.0367 -0.7071 -1.2621 5 7 1.7920 -2.1492 -1.0946 6 6 0.9418 -2.8142 -1.9018 7 8 0.3564 -2.2233 -2.7845 8 6 0.7186 -4.2918 -1.7076 9 16 -0.4685 -4.8894 -2.9364 10 6 -0.5388 -6.5926 -2.4908 11 1 0.0555 -6.9605 -1.6675 12 6 -1.3582 -7.4616 -3.1979 13 7 -2.0829 -7.0133 -4.2011 14 14 -1.4333 -9.2673 -2.7251 15 1 -1.9036 -9.3925 -1.3221 16 1 -2.3755 -9.9765 -3.6277 17 1 -0.0810 -9.8682 -2.8494 18 6 2.5151 -2.8346 -0.0181 19 6 2.4636 -2.0019 1.2383 20 6 2.8791 -2.5925 2.4241 21 6 2.8649 -1.8788 3.6046 22 6 2.4348 -0.5647 3.6057 23 6 2.0181 0.0218 2.4292 24 6 2.0253 -0.6970 1.2396 25 1 -0.3634 0.5240 0.8840 26 1 -0.3635 0.5036 -0.8958 27 1 -0.3634 -1.0276 0.0118 28 1 3.1229 1.4503 0.0117 29 1 1.6768 1.9537 -0.8958 30 1 1.6576 1.9604 0.8840 31 1 3.1046 -0.5262 -1.3852 32 1 1.4968 -0.3403 -2.1351 33 1 1.6639 -4.8210 -1.8277 34 1 0.3262 -4.4714 -0.7066 35 1 -2.6552 -7.6207 -4.6954 36 1 2.0528 -3.8036 0.1697 37 1 3.5539 -2.9802 -0.3144 38 1 3.2157 -3.6188 2.4224 39 1 3.1890 -2.3442 4.5236 40 1 2.4256 0.0011 4.5257 41 1 1.6829 1.0485 2.4323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270636209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:21 Heat of formation + Delta-G solvation = -33.797566 kcal Electronic energy + Delta-G solvation = -22680.637492 eV Core-core repulsion = 19457.398117 eV Total energy + Delta-G solvation = -3223.239376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.84133 -40.05169 -37.52756 -36.07753 -34.59299 -32.37839 -31.37960 -30.74585 -28.22573 -27.86542 -27.53471 -26.43157 -23.91242 -22.46609 -21.19425 -19.90158 -19.29310 -18.28389 -17.73411 -17.08132 -16.88626 -16.65193 -15.95776 -15.81759 -15.70594 -15.11394 -14.92712 -14.73235 -14.58119 -14.47053 -14.07295 -13.68132 -13.49632 -13.34704 -13.16183 -12.89856 -12.87524 -12.86829 -12.73659 -12.60063 -12.36886 -12.03780 -11.81564 -11.72355 -11.48370 -11.13500 -10.94527 -10.29558 -9.84775 -9.57846 -9.49324 -8.68623 -8.35056 -6.13842 0.43658 0.49275 1.23060 1.43629 1.44104 1.52918 1.54667 2.03796 2.26675 2.83560 2.99061 3.22093 3.49989 3.65744 3.70614 3.74806 4.00545 4.09894 4.20570 4.23824 4.28631 4.33426 4.43275 4.48983 4.52869 4.64681 4.67621 4.71884 4.76321 4.84559 4.96972 5.02027 5.09629 5.20067 5.23022 5.29155 5.40594 5.45416 5.60633 5.65889 5.68951 6.11514 6.18782 6.26885 7.05876 7.08492 8.74023 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020284 B = 0.003676 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.040286 B = 7615.902195 C = 8560.558495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.034 4.034 3 C -0.134 4.134 4 C 0.118 3.882 5 N -0.607 5.607 6 C 0.539 3.461 7 O -0.559 6.559 8 C -0.125 4.125 9 S -0.147 6.147 10 C -0.548 4.548 11 H 0.082 0.918 12 C 0.015 3.985 13 N -0.911 5.911 14 Si 0.998 3.002 15 H -0.262 1.262 16 H -0.278 1.278 17 H -0.261 1.261 18 C 0.143 3.857 19 C -0.108 4.108 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.071 4.071 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.023 0.977 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.271 0.729 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.699 14.284 17.748 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.035 4.035 3 C -0.192 4.192 4 C -0.004 4.004 5 N -0.340 5.340 6 C 0.327 3.673 7 O -0.437 6.437 8 C -0.276 4.276 9 S 0.080 5.920 10 C -0.696 4.696 11 H 0.101 0.899 12 C -0.190 4.190 13 N -0.548 5.548 14 Si 0.819 3.181 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.185 1.185 18 C 0.021 3.979 19 C -0.109 4.109 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.072 4.072 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.710 15.121 16.294 25.606 hybrid contribution 0.191 -1.800 0.779 1.970 sum 12.901 13.322 17.073 25.207 Atomic orbital electron populations 1.21786 0.94202 1.00463 1.02165 1.19830 0.95380 0.96586 0.91733 1.21898 1.01730 0.92318 1.03242 1.21952 1.01689 0.78717 0.98087 1.47954 1.43599 1.10033 1.32384 1.20006 0.78070 0.88448 0.80785 1.90672 1.48941 1.69774 1.34356 1.23369 1.04615 0.95103 1.04506 1.85561 1.54888 1.08795 1.42752 1.23162 1.31683 0.93710 1.21005 0.89944 1.26120 0.93819 1.04844 0.94188 1.70176 1.26365 1.37810 1.20408 0.85015 0.78741 0.75784 0.78532 1.18686 1.20341 1.18521 1.20748 0.98120 0.95385 0.83638 1.19869 1.01425 0.94419 0.95186 1.21255 1.00052 1.00883 0.91727 1.21381 0.99656 0.94858 0.98396 1.21417 0.98550 0.95611 0.98576 1.21429 1.00099 1.00728 0.91765 1.19510 0.98988 0.93402 0.95267 0.91072 0.92608 0.95751 0.91357 0.91630 0.90501 0.88997 0.90262 0.87305 0.87988 0.91957 0.88439 0.88074 0.84386 0.83843 0.83851 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.26 71.98 0.59 -2.61 16 2 C -0.03 -0.72 0.68 -52.86 -0.04 -0.75 16 3 C -0.13 -1.97 7.89 71.98 0.57 -1.40 16 4 C 0.12 2.94 5.12 86.34 0.44 3.38 16 5 N -0.61 -17.71 2.64 -823.07 -2.17 -19.88 16 6 C 0.54 21.20 7.74 87.65 0.68 21.88 16 7 O -0.56 -26.72 15.35 -3.04 -0.05 -26.76 16 8 C -0.12 -5.18 4.57 71.23 0.33 -4.85 16 9 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 10 C -0.55 -31.58 9.50 67.95 0.65 -30.93 16 11 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 12 C 0.02 0.87 5.49 84.86 0.47 1.33 16 13 N -0.91 -56.36 13.22 21.65 0.29 -56.08 16 14 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 15 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 17 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 18 C 0.14 3.22 6.08 85.63 0.52 3.74 16 19 C -0.11 -2.27 5.82 -19.82 -0.12 -2.38 16 20 C -0.12 -2.11 9.62 22.35 0.22 -1.89 16 21 C -0.13 -1.87 10.05 22.21 0.22 -1.65 16 22 C -0.12 -1.81 10.04 22.20 0.22 -1.59 16 23 C -0.12 -2.04 8.97 22.37 0.20 -1.84 16 24 C -0.07 -1.46 4.74 -19.86 -0.09 -1.56 16 25 H 0.07 1.48 8.11 -2.39 -0.02 1.46 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.02 0.75 7.95 -2.38 -0.02 0.73 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 0.91 6.33 -2.39 -0.02 0.89 16 31 H 0.09 1.88 8.10 -2.38 -0.02 1.86 16 32 H 0.08 2.32 7.02 -2.39 -0.02 2.30 16 33 H 0.11 4.05 8.11 -2.40 -0.02 4.03 16 34 H 0.10 3.93 7.58 -2.39 -0.02 3.91 16 35 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.10 2.19 6.19 -2.39 -0.01 2.18 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.14 1.91 8.05 -2.91 -0.02 1.88 16 39 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 41 H 0.14 1.78 6.21 -2.91 -0.02 1.76 16 Total: -1.00 -75.83 345.70 4.81 -71.02 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 1.02 Total: 16.59 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 4.86 Total: -21.12 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.89 Total: -75.96 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.05 Total: -26.76 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -75.83 4.81 -71.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270636209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.223 kcal (2) G-P(sol) polarization free energy of solvation -75.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds