Wall clock time and date at job start Tue Mar 31 2020 08:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47377 * 313.77955 * 3 2 1 5 5 C 1.37098 * 120.00119 * 264.14105 * 4 3 2 6 6 H 1.07999 * 120.00337 * 197.43160 * 5 4 3 7 7 C 1.38952 * 119.99912 * 17.43561 * 5 4 3 8 8 N 1.31414 * 119.99959 * 21.51899 * 7 5 4 9 9 Si 1.86801 * 120.00266 * 201.52523 * 7 5 4 10 10 H 1.48498 * 109.46984 * 89.99564 * 9 7 5 11 11 H 1.48500 * 109.47385 * 210.00027 * 9 7 5 12 12 H 1.48499 * 109.46874 * 330.00127 * 9 7 5 13 13 C 1.34779 * 119.99918 * 84.14130 * 4 3 2 14 14 O 1.21291 * 119.99703 * 180.02562 * 13 4 3 15 15 C 1.50694 * 119.99944 * 359.97438 * 13 4 3 16 16 C 1.53009 * 109.47060 * 180.02562 * 15 13 4 17 17 C 1.52990 * 109.47128 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.47132 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47369 * 179.97438 * 18 17 16 20 20 C 1.50694 * 109.47215 * 179.97438 * 19 18 17 21 21 C 1.33390 * 125.20236 * 89.99790 * 20 19 18 22 22 C 1.38427 * 114.92221 * 179.97438 * 21 20 19 23 23 C 1.33392 * 114.92151 * 0.02562 * 22 21 20 24 24 S 1.75882 * 125.20577 * 269.69290 * 20 19 18 25 25 H 4.40641 * 5.51367 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47214 * 193.78194 * 3 2 1 27 27 H 1.08999 * 109.47331 * 73.78001 * 3 2 1 28 28 H 0.97002 * 120.00202 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47066 * 60.00722 * 15 13 4 30 30 H 1.08998 * 109.47344 * 300.00108 * 15 13 4 31 31 H 1.09001 * 109.46655 * 59.99830 * 16 15 13 32 32 H 1.09004 * 109.46873 * 300.00595 * 16 15 13 33 33 H 1.09004 * 109.47426 * 59.99766 * 17 16 15 34 34 H 1.09004 * 109.47562 * 299.99968 * 17 16 15 35 35 H 1.09000 * 109.47254 * 60.00103 * 18 17 16 36 36 H 1.08998 * 109.46966 * 299.99936 * 18 17 16 37 37 H 1.09000 * 109.46827 * 59.99868 * 19 18 17 38 38 H 1.08998 * 109.47046 * 299.99914 * 19 18 17 39 39 H 1.08007 * 122.54159 * 359.96341 * 21 20 19 40 40 H 1.08000 * 122.54220 * 180.02562 * 22 21 20 41 41 H 1.07998 * 125.20172 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9548 0.9972 5 6 3.4774 -0.5211 2.2519 6 1 4.0902 -1.1414 2.8891 7 6 3.0362 0.7167 2.7037 8 7 1.9846 1.2805 2.1530 9 14 3.9379 1.5794 4.0937 10 1 5.0057 2.4436 3.5298 11 1 2.9799 2.4139 4.8625 12 1 4.5450 0.5662 4.9938 13 6 3.2477 -2.2601 0.6813 14 8 3.6520 -3.0512 1.5071 15 6 2.8706 -2.7369 -0.6976 16 6 3.0903 -4.2482 -0.7925 17 6 2.7081 -4.7321 -2.1926 18 6 2.9272 -6.2434 -2.2873 19 6 2.5443 -6.7276 -3.6873 20 6 2.7607 -8.2159 -3.7808 21 6 1.8491 -9.1453 -3.4901 22 6 2.2761 -10.4521 -3.6518 23 6 3.5349 -10.5839 -4.0732 24 16 4.2516 -8.9934 -4.2970 25 1 -1.0498 -0.0001 0.0003 26 1 3.0089 0.9989 0.2448 27 1 3.0095 -0.2862 -0.9867 28 1 1.6768 2.1447 2.4681 29 1 3.4903 -2.2321 -1.4387 30 1 1.8213 -2.5102 -0.8862 31 1 2.4704 -4.7526 -0.0514 32 1 4.1396 -4.4753 -0.6038 33 1 3.3283 -4.2275 -2.9335 34 1 1.6589 -4.5050 -2.3818 35 1 2.3066 -6.7476 -1.5466 36 1 3.9762 -6.4709 -2.0981 37 1 3.1646 -6.2233 -4.4284 38 1 1.4952 -6.5000 -3.8762 39 1 0.8531 -8.8970 -3.1539 40 1 1.6386 -11.3006 -3.4519 41 1 4.0355 -11.5236 -4.2544 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281454852.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:57 Heat of formation + Delta-G solvation = 39.255942 kcal Electronic energy + Delta-G solvation = -21251.467685 eV Core-core repulsion = 18031.396147 eV Total energy + Delta-G solvation = -3220.071538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.70948 -38.22782 -35.96609 -35.05777 -32.79552 -31.99404 -31.17485 -29.41220 -26.84344 -26.23593 -24.69585 -23.50558 -21.91749 -20.84492 -19.43010 -18.75766 -17.83165 -17.23019 -16.57509 -16.02077 -15.78181 -15.52342 -14.59547 -14.49285 -14.18928 -13.77873 -13.59177 -13.34890 -12.89439 -12.74177 -12.63486 -12.46839 -12.20471 -12.09278 -11.64047 -11.57138 -11.42573 -11.04626 -10.99482 -10.79889 -10.68321 -10.68043 -10.46308 -10.28073 -10.20242 -9.34033 -9.24721 -8.87385 -8.80881 -8.67616 -8.34630 -7.83207 -6.30532 -3.82594 0.80489 1.43893 1.81037 2.55105 3.16799 3.26908 3.31712 3.71017 3.95879 4.07148 4.20562 4.50539 4.82853 4.85089 4.91208 5.06015 5.14477 5.16921 5.31926 5.40192 5.43562 5.49362 5.59471 5.67790 5.75717 5.86079 5.92429 5.98842 6.07060 6.11598 6.17185 6.22109 6.28468 6.33061 6.43574 6.64931 6.76729 6.79101 7.04449 7.59232 8.09672 8.46492 8.82082 9.17793 9.40336 9.96537 10.70578 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.029878 B = 0.002234 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.904561 B =12531.018598 C =13034.068081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.111 4.111 3 C 0.232 3.768 4 N -0.445 5.445 5 C -0.314 4.314 6 H 0.103 0.897 7 C 0.030 3.970 8 N -0.864 5.864 9 Si 0.920 3.080 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.451 3.549 14 O -0.585 6.585 15 C -0.132 4.132 16 C -0.098 4.098 17 C -0.119 4.119 18 C -0.113 4.113 19 C -0.052 4.052 20 C -0.162 4.162 21 C -0.148 4.148 22 C -0.131 4.131 23 C -0.222 4.222 24 S 0.091 5.909 25 H 0.199 0.801 26 H 0.109 0.891 27 H 0.062 0.938 28 H 0.267 0.733 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 -14.510 -15.379 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.113 4.113 3 C 0.109 3.891 4 N -0.163 5.163 5 C -0.442 4.442 6 H 0.121 0.879 7 C -0.174 4.174 8 N -0.502 5.502 9 Si 0.747 3.253 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.195 1.195 13 C 0.240 3.760 14 O -0.469 6.469 15 C -0.172 4.172 16 C -0.136 4.136 17 C -0.157 4.157 18 C -0.151 4.151 19 C -0.091 4.091 20 C -0.279 4.279 21 C -0.178 4.178 22 C -0.162 4.162 23 C -0.358 4.358 24 S 0.354 5.646 25 H 0.216 0.784 26 H 0.127 0.873 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.383 -14.215 -15.397 21.001 hybrid contribution -1.457 0.084 1.217 1.900 sum -0.073 -14.132 -14.180 20.019 Atomic orbital electron populations 1.24262 0.95370 1.03772 1.04831 1.23215 0.94385 0.97395 0.96287 1.18249 0.84226 0.96470 0.90193 1.43745 1.56204 1.04759 1.11621 1.19667 1.30079 1.02109 0.92299 0.87900 1.25280 0.95205 0.98078 0.98869 1.70093 1.19755 1.17491 1.42898 0.86017 0.79162 0.79315 0.80787 1.20379 1.21172 1.19453 1.20180 0.83909 0.82235 0.89707 1.90510 1.51067 1.53468 1.51900 1.21577 1.02294 0.96846 0.96514 1.21253 1.02419 0.94421 0.95507 1.21636 1.01554 0.94519 0.97956 1.21617 1.02102 0.96222 0.95197 1.20255 1.02773 0.87408 0.98659 1.24637 0.96577 1.00047 1.06647 1.20152 1.01089 0.91858 1.04691 1.20180 0.95773 0.97762 1.02468 1.25580 0.99222 1.00735 1.10240 1.84335 1.15840 0.98149 1.66244 0.78435 0.87347 0.91999 0.92223 0.90709 0.90341 0.91595 0.91608 0.92062 0.91978 0.91519 0.91711 0.90750 0.89891 0.84311 0.84470 0.82127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.45 19.25 29.55 0.57 -4.88 16 2 C -0.11 -2.48 10.87 -37.12 -0.40 -2.89 16 3 C 0.23 5.12 4.91 -6.83 -0.03 5.08 16 4 N -0.44 -11.28 2.60 -117.94 -0.31 -11.59 16 5 C -0.31 -8.71 9.33 -14.93 -0.14 -8.85 16 6 H 0.10 3.02 7.39 -52.49 -0.39 2.63 16 7 C 0.03 0.78 4.87 -17.47 -0.08 0.69 16 8 N -0.86 -22.83 9.48 55.50 0.53 -22.30 16 9 Si 0.92 20.63 29.60 -169.99 -5.03 15.59 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.45 10.95 7.56 -10.99 -0.08 10.86 16 14 O -0.59 -16.25 15.63 5.55 0.09 -16.16 16 15 C -0.13 -2.39 4.31 -27.88 -0.12 -2.51 16 16 C -0.10 -1.57 4.50 -26.73 -0.12 -1.69 16 17 C -0.12 -1.41 5.21 -26.74 -0.14 -1.55 16 18 C -0.11 -1.23 5.20 -26.73 -0.14 -1.36 16 19 C -0.05 -0.48 5.71 -27.88 -0.16 -0.64 16 20 C -0.16 -1.60 5.76 -36.01 -0.21 -1.81 16 21 C -0.15 -1.41 10.05 -41.21 -0.41 -1.82 16 22 C -0.13 -1.15 10.18 -41.21 -0.42 -1.56 16 23 C -0.22 -1.90 11.23 29.04 0.33 -1.58 16 24 S 0.09 0.86 23.33 -107.50 -2.51 -1.65 16 25 H 0.20 3.33 7.80 -54.10 -0.42 2.91 16 26 H 0.11 2.52 6.44 -51.93 -0.33 2.19 16 27 H 0.06 1.12 6.69 -51.93 -0.35 0.78 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.07 1.19 7.41 -51.93 -0.39 0.80 16 30 H 0.08 1.39 7.50 -51.93 -0.39 1.00 16 31 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -31.53 361.67 -9.40 -40.93 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.05 Total: 4.25 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.57 Total: -14.51 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.22 Total: -33.89 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.09 Total: -16.16 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.53 -9.40 -40.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281454852.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.183 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds