Wall clock time and date at job start Tue Mar 31 2020 08:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47228 * 358.24553 * 3 2 1 5 5 C 1.37098 * 119.99974 * 263.54685 * 4 3 2 6 6 H 1.08008 * 119.99508 * 207.07231 * 5 4 3 7 7 C 1.38947 * 120.00505 * 27.07608 * 5 4 3 8 8 N 1.31414 * 119.99474 * 8.28197 * 7 5 4 9 9 Si 1.86803 * 120.00300 * 188.28516 * 7 5 4 10 10 H 1.48496 * 109.47007 * 59.99625 * 9 7 5 11 11 H 1.48498 * 109.47077 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46819 * 299.99600 * 9 7 5 13 13 C 1.34779 * 119.99832 * 83.54352 * 4 3 2 14 14 O 1.21295 * 120.00053 * 185.57526 * 13 4 3 15 15 C 1.50694 * 120.00085 * 5.57687 * 13 4 3 16 16 H 1.08993 * 109.47266 * 314.50296 * 15 13 4 17 17 C 1.53004 * 109.46986 * 74.50290 * 15 13 4 18 18 C 1.53002 * 109.46914 * 180.95867 * 17 15 13 19 19 O 1.42896 * 109.47406 * 194.50109 * 15 13 4 20 20 C 1.35951 * 117.00104 * 139.63228 * 19 15 13 21 21 C 1.38656 * 120.06282 * 5.81780 * 20 19 15 22 22 C 1.38186 * 119.96574 * 179.72288 * 21 20 19 23 23 C 1.38253 * 120.09845 * 0.55103 * 22 21 20 24 24 C 1.38254 * 120.12549 * 359.72361 * 23 22 21 25 25 C 1.38333 * 120.03146 * 0.02562 * 24 23 22 26 26 F 1.35095 * 120.05000 * 180.02562 * 25 24 23 27 27 H 4.40638 * 5.51442 * 180.02562 * 4 1 2 28 28 H 1.09009 * 109.46905 * 238.24842 * 3 2 1 29 29 H 1.08997 * 109.47487 * 118.24726 * 3 2 1 30 30 H 0.96999 * 119.99647 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.47210 * 300.95388 * 17 15 13 32 32 H 1.08995 * 109.47207 * 60.95628 * 17 15 13 33 33 H 1.08999 * 109.47212 * 60.00348 * 18 17 15 34 34 H 1.09004 * 109.46890 * 179.97438 * 18 17 15 35 35 H 1.08996 * 109.47355 * 299.99991 * 18 17 15 36 36 H 1.07995 * 120.01751 * 359.97438 * 21 20 19 37 37 H 1.08009 * 119.95009 * 180.27720 * 22 21 20 38 38 H 1.08002 * 119.93938 * 179.74376 * 23 22 21 39 39 H 1.08008 * 119.98575 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3797 0.0423 5 6 3.4895 -1.9449 1.2399 6 1 4.2246 -2.7358 1.2672 7 6 2.9033 -1.5004 2.4187 8 7 1.8962 -0.6573 2.3743 9 14 3.5466 -2.1012 4.0663 10 1 4.9744 -1.7189 4.2093 11 1 2.7570 -1.4828 5.1613 12 1 3.4203 -3.5790 4.1379 13 6 3.2361 -2.0939 -1.0962 14 8 3.5437 -3.2663 -1.0513 15 6 2.9672 -1.4358 -2.4249 16 1 2.0582 -0.8384 -2.3572 17 6 4.1452 -0.5319 -2.7940 18 6 3.8616 0.1547 -4.1316 19 8 2.8040 -2.4392 -3.4291 20 6 1.8255 -2.2365 -4.3509 21 6 1.1200 -1.0429 -4.3640 22 6 0.1297 -0.8368 -5.3055 23 6 -0.1667 -1.8235 -6.2274 24 6 0.5303 -3.0174 -6.2143 25 6 1.5263 -3.2273 -5.2775 26 9 2.2080 -4.3936 -5.2647 27 1 -1.0498 -0.0004 -0.0002 28 1 3.0091 0.5417 0.8739 29 1 3.0091 0.4872 -0.9052 30 1 1.4871 -0.3468 3.1972 31 1 4.2804 0.2232 -2.0196 32 1 5.0512 -1.1319 -2.8785 33 1 2.9557 0.7549 -4.0471 34 1 4.7007 0.7991 -4.3944 35 1 3.7264 -0.6002 -4.9061 36 1 1.3472 -0.2731 -3.6414 37 1 -0.4166 0.0949 -5.3183 38 1 -0.9440 -1.6612 -6.9594 39 1 0.2966 -3.7868 -6.9353 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281488341.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:59 Heat of formation + Delta-G solvation = -14.257276 kcal Electronic energy + Delta-G solvation = -25489.599199 eV Core-core repulsion = 21700.993978 eV Total energy + Delta-G solvation = -3788.605221 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.56453 -40.37766 -38.66478 -37.14224 -35.17889 -33.54993 -32.03797 -31.25694 -30.65493 -29.86389 -27.50438 -26.41338 -24.46570 -23.31686 -22.38943 -21.39854 -19.37320 -18.54087 -17.93720 -16.85811 -16.76453 -16.42514 -16.06662 -15.82445 -15.13300 -14.86158 -14.79680 -14.49861 -14.11821 -14.02128 -13.59081 -13.30811 -12.86048 -12.76921 -12.53804 -12.35216 -12.10862 -11.88087 -11.63228 -11.57564 -11.47986 -11.24169 -11.06425 -10.74965 -10.62414 -10.43322 -10.34823 -9.47871 -9.29990 -8.92365 -8.89853 -8.51571 -7.98894 -7.88672 -6.34426 -4.01886 1.14558 1.30842 3.07104 3.14986 3.22018 3.28407 3.58968 3.61993 3.81812 3.97088 4.14224 4.33675 4.68574 4.76850 4.88015 4.96938 4.99223 5.14644 5.17883 5.21636 5.31821 5.39875 5.47436 5.56166 5.75487 5.83424 5.94667 6.00562 6.07344 6.16431 6.18622 6.21892 6.38051 6.41016 6.66072 6.70820 6.97173 7.47653 7.48505 8.00604 8.35566 8.75403 9.04674 9.23094 9.77846 10.64679 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.004526 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.205845 B = 6185.013603 C = 6517.305625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.114 4.114 3 C 0.226 3.774 4 N -0.436 5.436 5 C -0.311 4.311 6 H 0.100 0.900 7 C 0.034 3.966 8 N -0.870 5.870 9 Si 0.929 3.071 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.455 3.545 14 O -0.555 6.555 15 C 0.069 3.931 16 H 0.093 0.907 17 C -0.140 4.140 18 C -0.155 4.155 19 O -0.272 6.272 20 C 0.110 3.890 21 C -0.187 4.187 22 C -0.088 4.088 23 C -0.139 4.139 24 C -0.119 4.119 25 C 0.063 3.937 26 F -0.132 7.132 27 H 0.199 0.801 28 H 0.113 0.887 29 H 0.061 0.939 30 H 0.270 0.730 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.143 0.857 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.069 6.310 -13.566 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.116 4.116 3 C 0.103 3.897 4 N -0.156 5.156 5 C -0.438 4.438 6 H 0.118 0.882 7 C -0.171 4.171 8 N -0.508 5.508 9 Si 0.755 3.245 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.241 3.759 14 O -0.436 6.436 15 C 0.009 3.991 16 H 0.111 0.889 17 C -0.178 4.178 18 C -0.212 4.212 19 O -0.184 6.184 20 C 0.063 3.937 21 C -0.205 4.205 22 C -0.107 4.107 23 C -0.158 4.158 24 C -0.138 4.138 25 C 0.043 3.957 26 F -0.110 7.110 27 H 0.216 0.784 28 H 0.130 0.870 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.160 0.840 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.819 5.593 -13.338 14.735 hybrid contribution -0.182 -0.217 1.124 1.159 sum -3.000 5.376 -12.214 13.678 Atomic orbital electron populations 1.24264 0.95365 1.01708 1.06403 1.23104 0.94308 0.98696 0.95501 1.18404 0.84438 0.85445 1.01364 1.43502 1.56594 1.09962 1.05589 1.19580 1.21861 1.20729 0.81648 0.88245 1.25420 0.94781 0.96869 0.99982 1.69916 1.20600 1.31697 1.28545 0.85952 0.78656 0.79267 0.80582 1.19790 1.20931 1.19784 1.19781 0.84682 0.87031 0.84390 1.90580 1.51066 1.15560 1.86399 1.22563 1.00138 0.88975 0.87435 0.88918 1.22035 0.98489 0.98651 0.98625 1.21919 1.01723 1.00418 0.97118 1.86280 1.48514 1.46491 1.37067 1.19204 0.90438 0.93406 0.90681 1.21351 0.99493 0.97237 1.02465 1.20979 0.96264 0.99303 0.94105 1.20845 1.01098 0.93225 1.00592 1.20969 0.95341 0.99187 0.98271 1.17031 0.96924 0.82431 0.99270 1.91508 1.78437 1.45041 1.96048 0.78413 0.86956 0.92090 0.91932 0.89283 0.90156 0.92438 0.92094 0.92390 0.84003 0.85210 0.85168 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.20 19.25 29.55 0.57 -4.63 16 2 C -0.11 -2.47 10.49 -37.12 -0.39 -2.86 16 3 C 0.23 4.77 4.74 -6.83 -0.03 4.74 16 4 N -0.44 -10.79 2.59 -117.93 -0.31 -11.10 16 5 C -0.31 -8.41 9.17 -14.93 -0.14 -8.55 16 6 H 0.10 2.81 7.54 -52.48 -0.40 2.42 16 7 C 0.03 0.86 5.12 -17.47 -0.09 0.77 16 8 N -0.87 -22.31 9.15 55.50 0.51 -21.81 16 9 Si 0.93 20.37 29.56 -169.99 -5.03 15.34 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 C 0.45 11.27 6.84 -10.99 -0.08 11.20 16 14 O -0.56 -16.21 16.35 -13.93 -0.23 -16.43 16 15 C 0.07 1.33 1.72 -27.88 -0.05 1.28 16 16 H 0.09 1.67 4.00 -51.93 -0.21 1.46 16 17 C -0.14 -2.18 5.37 -26.73 -0.14 -2.32 16 18 C -0.15 -1.90 8.51 37.16 0.32 -1.59 16 19 O -0.27 -5.57 8.91 -39.06 -0.35 -5.92 16 20 C 0.11 1.88 5.58 -39.18 -0.22 1.67 16 21 C -0.19 -2.61 7.46 -39.45 -0.29 -2.90 16 22 C -0.09 -0.98 10.04 -39.59 -0.40 -1.38 16 23 C -0.14 -1.46 10.04 -39.57 -0.40 -1.85 16 24 C -0.12 -1.45 10.02 -39.54 -0.40 -1.85 16 25 C 0.06 1.02 7.31 -39.30 -0.29 0.74 16 26 F -0.13 -2.39 17.11 2.25 0.04 -2.35 16 27 H 0.20 3.26 7.80 -54.10 -0.42 2.84 16 28 H 0.11 2.48 6.71 -51.92 -0.35 2.13 16 29 H 0.06 1.04 4.77 -51.93 -0.25 0.79 16 30 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.09 1.27 6.04 -51.93 -0.31 0.96 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 0.63 6.62 -51.93 -0.34 0.28 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.77 6.68 -51.93 -0.35 0.42 16 36 H 0.14 1.89 4.45 -52.49 -0.23 1.65 16 37 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 330.06 15.07 4.97 4.97 Total: -1.00 -32.67 330.06 -6.52 -39.19 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.11 Total: 5.63 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.02 Total: -7.54 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.20 Total: -32.90 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.58 Total: -22.35 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.67 -6.52 -39.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281488341.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.929 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds