Wall clock time and date at job start Tue Mar 31 2020 08:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47228 * 358.24553 * 3 2 1 5 5 C 1.37098 * 119.99974 * 263.54685 * 4 3 2 6 6 H 1.08008 * 119.99508 * 207.07231 * 5 4 3 7 7 C 1.38947 * 120.00505 * 27.07608 * 5 4 3 8 8 N 1.31414 * 119.99474 * 8.28197 * 7 5 4 9 9 Si 1.86803 * 120.00300 * 188.28516 * 7 5 4 10 10 H 1.48496 * 109.47007 * 59.99625 * 9 7 5 11 11 H 1.48498 * 109.47077 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46819 * 299.99600 * 9 7 5 13 13 C 1.34779 * 119.99832 * 83.54352 * 4 3 2 14 14 O 1.21295 * 120.00053 * 185.57526 * 13 4 3 15 15 C 1.50694 * 120.00085 * 5.57687 * 13 4 3 16 16 H 1.08993 * 109.47266 * 314.50296 * 15 13 4 17 17 C 1.53004 * 109.46986 * 74.50290 * 15 13 4 18 18 C 1.53002 * 109.46914 * 180.95867 * 17 15 13 19 19 O 1.42896 * 109.47406 * 194.50109 * 15 13 4 20 20 C 1.35951 * 117.00104 * 139.63228 * 19 15 13 21 21 C 1.38656 * 120.06282 * 5.81780 * 20 19 15 22 22 C 1.38186 * 119.96574 * 179.72288 * 21 20 19 23 23 C 1.38253 * 120.09845 * 0.55103 * 22 21 20 24 24 C 1.38254 * 120.12549 * 359.72361 * 23 22 21 25 25 C 1.38333 * 120.03146 * 0.02562 * 24 23 22 26 26 F 1.35095 * 120.05000 * 180.02562 * 25 24 23 27 27 H 4.40638 * 5.51442 * 180.02562 * 4 1 2 28 28 H 1.09009 * 109.46905 * 238.24842 * 3 2 1 29 29 H 1.08997 * 109.47487 * 118.24726 * 3 2 1 30 30 H 0.96999 * 119.99647 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.47210 * 300.95388 * 17 15 13 32 32 H 1.08995 * 109.47207 * 60.95628 * 17 15 13 33 33 H 1.08999 * 109.47212 * 60.00348 * 18 17 15 34 34 H 1.09004 * 109.46890 * 179.97438 * 18 17 15 35 35 H 1.08996 * 109.47355 * 299.99991 * 18 17 15 36 36 H 1.07995 * 120.01751 * 359.97438 * 21 20 19 37 37 H 1.08009 * 119.95009 * 180.27720 * 22 21 20 38 38 H 1.08002 * 119.93938 * 179.74376 * 23 22 21 39 39 H 1.08008 * 119.98575 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3797 0.0423 5 6 3.4895 -1.9449 1.2399 6 1 4.2246 -2.7358 1.2672 7 6 2.9033 -1.5004 2.4187 8 7 1.8962 -0.6573 2.3743 9 14 3.5466 -2.1012 4.0663 10 1 4.9744 -1.7189 4.2093 11 1 2.7570 -1.4828 5.1613 12 1 3.4203 -3.5790 4.1379 13 6 3.2361 -2.0939 -1.0962 14 8 3.5437 -3.2663 -1.0513 15 6 2.9672 -1.4358 -2.4249 16 1 2.0582 -0.8384 -2.3572 17 6 4.1452 -0.5319 -2.7940 18 6 3.8616 0.1547 -4.1316 19 8 2.8040 -2.4392 -3.4291 20 6 1.8255 -2.2365 -4.3509 21 6 1.1200 -1.0429 -4.3640 22 6 0.1297 -0.8368 -5.3055 23 6 -0.1667 -1.8235 -6.2274 24 6 0.5303 -3.0174 -6.2143 25 6 1.5263 -3.2273 -5.2775 26 9 2.2080 -4.3936 -5.2647 27 1 -1.0498 -0.0004 -0.0002 28 1 3.0091 0.5417 0.8739 29 1 3.0091 0.4872 -0.9052 30 1 1.4871 -0.3468 3.1972 31 1 4.2804 0.2232 -2.0196 32 1 5.0512 -1.1319 -2.8785 33 1 2.9557 0.7549 -4.0471 34 1 4.7007 0.7991 -4.3944 35 1 3.7264 -0.6002 -4.9061 36 1 1.3472 -0.2731 -3.6414 37 1 -0.4166 0.0949 -5.3183 38 1 -0.9440 -1.6612 -6.9594 39 1 0.2966 -3.7868 -6.9353 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281488341.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:59 Heat of formation + Delta-G solvation = -32.947881 kcal Electronic energy + Delta-G solvation = -25490.409684 eV Core-core repulsion = 21700.993978 eV Total energy + Delta-G solvation = -3789.415707 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.82575 -41.76620 -40.23614 -38.41335 -37.11622 -34.92162 -33.78892 -33.05755 -31.65930 -30.94332 -29.00683 -28.09874 -26.26585 -24.39504 -23.45104 -22.76663 -20.98648 -19.85851 -19.66399 -18.57017 -17.99233 -17.92285 -17.49070 -17.15861 -16.65876 -16.35184 -16.13819 -15.84575 -15.64642 -15.47001 -14.95445 -14.78795 -14.26200 -14.12869 -14.05746 -13.71733 -13.42668 -13.28506 -13.07167 -12.84449 -12.82486 -12.62286 -12.61146 -12.32404 -12.17770 -11.96358 -11.58852 -11.28157 -11.05209 -10.63574 -10.37620 -9.89838 -9.84556 -9.18318 -8.31697 -6.07777 0.14729 0.27896 1.35190 1.39419 1.48072 1.67130 1.88371 2.17609 2.29717 2.37717 2.63262 3.01835 3.07248 3.27836 3.59117 3.70212 3.77372 3.81315 3.93605 3.99594 4.16617 4.32287 4.37480 4.40138 4.53391 4.58385 4.77109 4.93450 4.96072 5.01588 5.08877 5.12336 5.27719 5.31265 5.39447 5.41493 5.44160 5.71811 5.99904 6.25967 6.43592 7.06901 7.13428 7.28425 7.84751 8.64036 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.004526 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.205845 B = 6185.013603 C = 6517.305625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.155 4.155 3 C 0.228 3.772 4 N -0.441 5.441 5 C -0.350 4.350 6 H 0.070 0.930 7 C 0.006 3.994 8 N -0.873 5.873 9 Si 0.988 3.012 10 H -0.263 1.263 11 H -0.269 1.269 12 H -0.285 1.285 13 C 0.437 3.563 14 O -0.619 6.619 15 C 0.084 3.916 16 H 0.108 0.892 17 C -0.136 4.136 18 C -0.144 4.144 19 O -0.311 6.311 20 C 0.072 3.928 21 C -0.191 4.191 22 C -0.077 4.077 23 C -0.122 4.122 24 C -0.113 4.113 25 C 0.023 3.977 26 F -0.156 7.156 27 H 0.232 0.768 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.274 0.726 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.147 0.853 37 H 0.170 0.830 38 H 0.175 0.825 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.504 9.050 -14.967 18.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.157 4.157 3 C 0.106 3.894 4 N -0.160 5.160 5 C -0.478 4.478 6 H 0.088 0.912 7 C -0.197 4.197 8 N -0.510 5.510 9 Si 0.812 3.188 10 H -0.187 1.187 11 H -0.193 1.193 12 H -0.211 1.211 13 C 0.225 3.775 14 O -0.505 6.505 15 C 0.024 3.976 16 H 0.125 0.875 17 C -0.174 4.174 18 C -0.201 4.201 19 O -0.224 6.224 20 C 0.026 3.974 21 C -0.209 4.209 22 C -0.095 4.095 23 C -0.139 4.139 24 C -0.131 4.131 25 C 0.004 3.996 26 F -0.135 7.135 27 H 0.249 0.751 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.164 0.836 37 H 0.187 0.813 38 H 0.193 0.807 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.277 8.395 -14.753 17.775 hybrid contribution 0.425 -1.057 1.498 1.882 sum -4.852 7.337 -13.255 15.908 Atomic orbital electron populations 1.25111 0.96302 0.99841 1.04762 1.23355 0.94920 1.00353 0.97046 1.18518 0.84805 0.83385 1.02683 1.43710 1.55866 1.11350 1.05073 1.19524 1.22996 1.21611 0.83621 0.91175 1.26071 0.94723 0.96629 1.02305 1.70024 1.20341 1.31218 1.29403 0.85081 0.78866 0.77897 0.76979 1.18722 1.19335 1.21103 1.20841 0.83506 0.86626 0.86483 1.90515 1.53882 1.18379 1.87685 1.22387 1.02041 0.88523 0.84608 0.87456 1.22051 0.96175 0.98088 1.01076 1.21867 1.03716 1.00218 0.94341 1.86209 1.50448 1.47661 1.38081 1.19592 0.91313 0.95394 0.91061 1.21505 0.99942 0.96005 1.03449 1.21486 0.94715 1.00840 0.92453 1.21408 1.00567 0.91607 1.00368 1.21366 0.93722 1.00746 0.97273 1.17662 0.98762 0.81980 1.01223 1.91432 1.79323 1.46430 1.96363 0.75133 0.88322 0.88166 0.91579 0.88062 0.92033 0.90378 0.89662 0.93611 0.83578 0.81270 0.80739 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.18 19.25 74.32 1.43 -7.75 16 2 C -0.16 -6.55 10.49 31.13 0.33 -6.22 16 3 C 0.23 9.62 4.74 84.57 0.40 10.02 16 4 N -0.44 -22.71 2.59 -645.41 -1.67 -24.38 16 5 C -0.35 -19.86 9.17 84.04 0.77 -19.09 16 6 H 0.07 4.28 7.54 -2.91 -0.02 4.26 16 7 C 0.01 0.33 5.12 84.93 0.43 0.77 16 8 N -0.87 -44.63 9.15 21.66 0.20 -44.43 16 9 Si 0.99 42.25 29.56 68.60 2.03 44.28 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 12 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 13 C 0.44 22.91 6.84 87.65 0.60 23.51 16 14 O -0.62 -39.07 16.35 15.55 0.25 -38.82 16 15 C 0.08 3.33 1.72 29.85 0.05 3.39 16 16 H 0.11 3.84 4.00 -2.39 -0.01 3.83 16 17 C -0.14 -4.25 5.37 30.60 0.16 -4.09 16 18 C -0.14 -3.31 8.51 71.98 0.61 -2.69 16 19 O -0.31 -13.44 8.91 -74.37 -0.66 -14.10 16 20 C 0.07 2.51 5.58 22.53 0.13 2.63 16 21 C -0.19 -4.92 7.46 22.36 0.17 -4.76 16 22 C -0.08 -1.37 10.04 22.26 0.22 -1.15 16 23 C -0.12 -1.97 10.04 22.28 0.22 -1.75 16 24 C -0.11 -2.49 10.02 22.30 0.22 -2.27 16 25 C 0.02 0.77 7.31 22.45 0.16 0.93 16 26 F -0.16 -6.05 17.11 44.97 0.77 -5.28 16 27 H 0.23 6.78 7.80 -4.43 -0.03 6.75 16 28 H 0.10 4.40 6.71 -2.38 -0.02 4.38 16 29 H 0.10 3.32 4.77 -2.39 -0.01 3.31 16 30 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 31 H 0.10 2.83 6.04 -2.38 -0.01 2.81 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.08 1.46 6.62 -2.39 -0.02 1.44 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.04 1.18 6.68 -2.39 -0.02 1.16 16 36 H 0.15 3.53 4.45 -2.91 -0.01 3.52 16 37 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -77.99 330.06 7.92 -70.07 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 1.09 Total: 21.17 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 5.92 Total: -8.51 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -1.47 Total: -68.81 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -0.41 Total: -52.92 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.77 Total: -5.28 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -77.99 7.92 -70.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281488341.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.119 kcal (2) G-P(sol) polarization free energy of solvation -77.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds