Wall clock time and date at job start Tue Mar 31 2020 08:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46897 * 203.08636 * 3 2 1 5 5 C 1.37093 * 120.00266 * 263.77613 * 4 3 2 6 6 H 1.08009 * 120.00250 * 206.41610 * 5 4 3 7 7 C 1.38952 * 120.00132 * 26.41011 * 5 4 3 8 8 N 1.31412 * 119.99936 * 8.47621 * 7 5 4 9 9 Si 1.86803 * 120.00158 * 188.47230 * 7 5 4 10 10 H 1.48506 * 109.46791 * 90.00065 * 9 7 5 11 11 H 1.48497 * 109.47026 * 210.00146 * 9 7 5 12 12 H 1.48498 * 109.47023 * 330.00485 * 9 7 5 13 13 C 1.34780 * 120.00072 * 83.77661 * 4 3 2 14 14 O 1.21288 * 120.00454 * 185.76339 * 13 4 3 15 15 C 1.50699 * 119.99757 * 5.75712 * 13 4 3 16 16 H 1.08997 * 109.47380 * 36.59522 * 15 13 4 17 17 C 1.53001 * 109.47143 * 276.59932 * 15 13 4 18 18 C 1.53002 * 109.47097 * 175.54883 * 17 15 13 19 19 O 1.42903 * 109.47337 * 156.59897 * 15 13 4 20 20 C 1.35953 * 117.00079 * 213.59893 * 19 15 13 21 21 C 1.38660 * 120.06350 * 3.01850 * 20 19 15 22 22 C 1.38180 * 119.96758 * 179.71953 * 21 20 19 23 23 C 1.38265 * 120.09506 * 0.55615 * 22 21 20 24 24 C 1.38260 * 120.12394 * 359.72654 * 23 22 21 25 25 C 1.38323 * 120.03045 * 359.97438 * 24 23 22 26 26 F 1.35097 * 120.04581 * 180.02562 * 25 24 23 27 27 H 4.40640 * 5.51383 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.46918 * 83.08997 * 3 2 1 29 29 H 1.08994 * 109.47081 * 323.08711 * 3 2 1 30 30 H 0.96996 * 119.99923 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47530 * 295.54627 * 17 15 13 32 32 H 1.09003 * 109.47241 * 55.54713 * 17 15 13 33 33 H 1.08997 * 109.47640 * 59.99749 * 18 17 15 34 34 H 1.09000 * 109.47310 * 180.02562 * 18 17 15 35 35 H 1.09007 * 109.46917 * 299.99879 * 18 17 15 36 36 H 1.07995 * 120.01631 * 359.97438 * 21 20 19 37 37 H 1.07995 * 119.95307 * 180.27965 * 22 21 20 38 38 H 1.07999 * 119.93718 * 179.73546 * 23 22 21 39 39 H 1.07998 * 119.98168 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2715 0.5416 5 6 3.4831 2.2895 -0.3075 6 1 4.2096 3.0261 0.0026 7 6 2.9027 2.3737 -1.5672 8 7 1.9024 1.5825 -1.8839 9 14 3.5443 3.6115 -2.8104 10 1 4.6204 2.9867 -3.6210 11 1 2.4360 4.0368 -3.7026 12 1 4.0866 4.7950 -2.0959 13 6 3.2390 1.4398 1.8747 14 8 3.5421 2.5236 2.3271 15 6 2.9799 0.2814 2.8032 16 1 3.3534 -0.6373 2.3510 17 6 1.4756 0.1529 3.0508 18 6 1.2032 -1.0884 3.9029 19 8 3.6495 0.5075 4.0452 20 6 4.1319 -0.5854 4.6942 21 6 4.0197 -1.8415 4.1176 22 6 4.5158 -2.9502 4.7764 23 6 5.1138 -2.8106 6.0152 24 6 5.2225 -1.5608 6.5963 25 6 4.7332 -0.4466 5.9387 26 9 4.8397 0.7748 6.5061 27 1 -1.0502 -0.0004 0.0000 28 1 3.0094 -0.1228 -1.0202 29 1 3.0097 -0.8208 0.6172 30 1 1.4970 1.6415 -2.7632 31 1 1.1164 1.0389 3.5744 32 1 0.9569 0.0596 2.0966 33 1 1.7218 -0.9952 4.8570 34 1 0.1314 -1.1803 4.0789 35 1 1.5623 -1.9745 3.3792 36 1 3.5484 -1.9526 3.1523 37 1 4.4323 -3.9277 4.3250 38 1 5.4969 -3.6795 6.5297 39 1 5.6897 -1.4545 7.5642 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281488344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:01 Heat of formation + Delta-G solvation = -11.393293 kcal Electronic energy + Delta-G solvation = -25457.836654 eV Core-core repulsion = 21669.355625 eV Total energy + Delta-G solvation = -3788.481029 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.59466 -40.41670 -38.69247 -37.16097 -35.22311 -33.51469 -31.95279 -31.37357 -30.68406 -29.91653 -27.50258 -26.41653 -24.48032 -23.30883 -22.40872 -21.34277 -19.38982 -18.59311 -17.93685 -16.82407 -16.80061 -16.42386 -16.06297 -15.94695 -15.15517 -14.91835 -14.70135 -14.50521 -14.14336 -13.93736 -13.61884 -13.31462 -12.82797 -12.76338 -12.52688 -12.39920 -12.16667 -11.90823 -11.65926 -11.55943 -11.44578 -11.29270 -11.07384 -10.75318 -10.61673 -10.45320 -10.23853 -9.49995 -9.23110 -8.93353 -8.90687 -8.49501 -8.00992 -7.91218 -6.37022 -4.03608 1.10720 1.28025 3.03701 3.14286 3.22057 3.28293 3.52879 3.57196 3.83188 3.94737 4.12924 4.31055 4.66383 4.73495 4.83510 4.96113 4.97669 5.17767 5.19345 5.23928 5.33371 5.42551 5.50124 5.56287 5.74401 5.91700 5.96709 6.04844 6.14814 6.15261 6.19185 6.27079 6.35481 6.53839 6.65040 6.68411 6.94622 7.46202 7.46932 7.98563 8.33736 8.69976 9.02932 9.20868 9.75985 10.62064 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020395 B = 0.004412 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.550746 B = 6345.247002 C = 6935.939881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.106 4.106 3 C 0.230 3.770 4 N -0.436 5.436 5 C -0.309 4.309 6 H 0.101 0.899 7 C 0.034 3.966 8 N -0.869 5.869 9 Si 0.929 3.071 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.456 3.544 14 O -0.555 6.555 15 C 0.072 3.928 16 H 0.088 0.912 17 C -0.153 4.153 18 C -0.151 4.151 19 O -0.274 6.274 20 C 0.112 3.888 21 C -0.190 4.190 22 C -0.088 4.088 23 C -0.141 4.141 24 C -0.118 4.118 25 C 0.061 3.939 26 F -0.132 7.132 27 H 0.200 0.800 28 H 0.114 0.886 29 H 0.056 0.944 30 H 0.270 0.730 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.267 -12.918 9.002 15.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.107 4.107 3 C 0.107 3.893 4 N -0.157 5.157 5 C -0.437 4.437 6 H 0.119 0.881 7 C -0.170 4.170 8 N -0.507 5.507 9 Si 0.756 3.244 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.243 3.757 14 O -0.436 6.436 15 C 0.013 3.987 16 H 0.105 0.895 17 C -0.190 4.190 18 C -0.208 4.208 19 O -0.186 6.186 20 C 0.064 3.936 21 C -0.208 4.208 22 C -0.106 4.106 23 C -0.159 4.159 24 C -0.137 4.137 25 C 0.041 3.959 26 F -0.111 7.111 27 H 0.217 0.783 28 H 0.132 0.868 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.160 0.840 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.347 -12.102 9.114 15.210 hybrid contribution -0.209 0.644 -0.859 1.094 sum 1.138 -11.458 8.255 14.167 Atomic orbital electron populations 1.24255 0.95356 1.02983 1.05110 1.22952 0.94205 0.97687 0.95892 1.18301 0.84532 0.85335 1.01180 1.43555 1.56619 1.12527 1.02998 1.19658 1.22285 1.07306 0.94417 0.88133 1.25423 0.94764 0.97930 0.98931 1.69910 1.20973 1.38101 1.21756 0.85874 0.78200 0.80592 0.79778 1.20259 1.20889 1.19328 1.19712 0.84644 0.88623 0.82749 1.90576 1.51159 1.26578 1.75293 1.22582 0.93433 0.99519 0.83197 0.89495 1.22247 0.93743 0.99562 1.03487 1.21919 1.01750 0.97279 0.99874 1.86329 1.69197 1.28566 1.34515 1.19211 0.94909 0.87837 0.91606 1.21335 1.05764 0.91428 1.02285 1.20975 0.96643 0.98298 0.94711 1.20845 1.02197 0.96572 0.96280 1.20969 1.00770 0.91240 1.00671 1.17023 1.05836 0.81425 0.91586 1.91510 1.94428 1.41009 1.84117 0.78324 0.86810 0.92622 0.91938 0.90605 0.87768 0.92768 0.92272 0.92552 0.84042 0.85209 0.85184 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.96 18.18 29.55 0.54 -4.43 16 2 C -0.11 -2.20 8.84 -37.12 -0.33 -2.53 16 3 C 0.23 4.80 4.91 -6.83 -0.03 4.77 16 4 N -0.44 -10.78 2.59 -117.93 -0.31 -11.08 16 5 C -0.31 -8.33 9.18 -14.93 -0.14 -8.47 16 6 H 0.10 2.85 7.53 -52.48 -0.40 2.46 16 7 C 0.03 0.85 5.12 -17.47 -0.09 0.76 16 8 N -0.87 -21.93 9.12 55.50 0.51 -21.43 16 9 Si 0.93 20.23 29.56 -169.99 -5.03 15.20 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.46 11.31 6.79 -10.98 -0.07 11.23 16 14 O -0.56 -16.18 16.44 -13.17 -0.22 -16.39 16 15 C 0.07 1.40 1.86 -27.88 -0.05 1.35 16 16 H 0.09 1.46 3.58 -51.93 -0.19 1.27 16 17 C -0.15 -2.67 5.56 -26.73 -0.15 -2.82 16 18 C -0.15 -2.06 8.45 37.16 0.31 -1.75 16 19 O -0.27 -5.58 9.17 -38.32 -0.35 -5.93 16 20 C 0.11 1.85 5.28 -39.18 -0.21 1.64 16 21 C -0.19 -2.49 7.14 -39.45 -0.28 -2.77 16 22 C -0.09 -0.91 10.04 -39.59 -0.40 -1.31 16 23 C -0.14 -1.38 10.04 -39.56 -0.40 -1.78 16 24 C -0.12 -1.37 10.02 -39.54 -0.40 -1.76 16 25 C 0.06 0.95 7.31 -39.30 -0.29 0.66 16 26 F -0.13 -2.32 17.11 2.25 0.04 -2.28 16 27 H 0.20 3.12 7.80 -54.08 -0.42 2.70 16 28 H 0.11 2.50 6.68 -51.93 -0.35 2.15 16 29 H 0.06 0.95 6.09 -51.93 -0.32 0.63 16 30 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.10 1.88 3.80 -51.93 -0.20 1.69 16 33 H 0.05 0.76 6.25 -51.93 -0.32 0.44 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.67 6.78 -51.93 -0.35 0.32 16 36 H 0.14 1.73 4.58 -52.49 -0.24 1.49 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -31.99 325.87 -6.45 -38.45 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.03 Total: 5.75 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.98 Total: -7.19 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.20 Total: -32.51 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.57 Total: -22.32 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.99 -6.45 -38.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281488344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.052 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds